Spo24101 (gene)

Overview
NameSpo24101
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionROTUNDIFOLIA like 19
Locationchr1 : 29603069 .. 29608102 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATCGCAAGAATGATGAAGGAATCTGAGAAAAGAATGTCAAGCAGGAAATTAGGAAGATTTTTAAGGGAACAAAGAGGAAGACTTTACATTATTAGAAGGTGTATTGTAATGCTCCTCTGTTCTCAAGATTGATTGATTAGTTAGTGCTCGTTTTTTTTCCTCTGTTATCTTAATCGATCTCTTCATTCTTTCTTTTTAGGGAATGGTTTTCCATGATAGAATTTCCAATTGCACATAGAAAAGAAGAGTGATTATTATGCTAGATTTTTAGATTAATTAGGTAGATTTTTAGCTCCTTAACTACTTCTTTTTCTTTGTACATGGTTAAATTTCTTAGTAACAATGGCTAATTTCTGATTTTGAACACTTGAGTTTTTCTTTAAGTTTGATTTCAAGTCACAACTCCGAGTATTGTGTTTCAACTTTCAAGGGGGTAACACCTAAGATATTGGATTCAATCTCGTTTTATACCATTTTCATTTGTGGCTCTCTCTGCTCTAAAAAAAACAACGGCAAGTATTATAATTTATATGAAACATAAAATTAGGTTCGTTTGGGTGTATGATGAAACCCTTTGAAACCTTTATGATGTGCAAATATGGTATTATACTATGATGCGAAGTTCATGATTCAAGTCACTGCAATTCCATAATTTCATGGGCAATCATGGCTAAAAAGATTATCATAATGTTTGAATGTTGTGGTCACTATTTGGTGATGGGTTTCATTACTTCATTATGTAACTTAAGTAATCCATGGTCGTGGCAAGGGTCTTGGGATTGGCAAGCAGACAACGAAAACGTATTTTATACGAAGTACTTGTTTAAATTTTTGGTGATGGCAAATGGGAAATAAATTGGCTATTATAATAAAAGTCCCATTTATTCGGAAATAGTATTCGCGTAAATGAGTCAATGATGTCATGGAGTGAAGGAGTAGTCATTTTATTGAACTACTCCTTATATCTCTTAATACTCGTACCGTTTTGATTTTTTGCATTATTCATATAATTTATTTTAATTCTATTTTATTTATTGTATATGAAAACAAATATTAGTATATACTAGATTGTTGGATTTATCTCAATATATATTTTCAAAATGTTAACATTTTATAAGTTTTTATAATATGTAGTTAAAGATATTGATGGTCAAAGTTGTGCATTGACAAACGTGTTCAGTCAAAACGGTGCAAATATTAATGGATGGATGAAGTATTAAACACAATAATATACCGAGTACTTTTATAAAATTTTAACATGTAAAAACTCGAGCTTTACTTCTCATATGGATTCGTTATAGCTTTCATGGACTTCATTCAATTATGTTGGAATGAAATTATAATCATAATTAAACTATTACTGGTGGTAATAGTCTAGTTTAGCTTAAGTGTCGTAATCACATCAATCATGCATATTATCTTAAACTAATTAATATGATTAATACCTTAAATTAAAGATAAGTTATATAAATTTAGGAAAGTATAGTGTATGTAGCCTATGATATGCTTGAATAAATGAAGATGATTTCGTAAAAGGTCGTCGTATACTTATGGGCGTGTTCGGCGGTAGCGTTTGAGGTAGTGGGTAGCGTTTTGATCTAGTCAAGACCCTACTTATAAAATTTGTAAGTGTTTGGTAAAGTAGCGATTTAGGTAGCGGTTAGCGGTTGGGTAGCTTTTGTCAAACGTTAAAATTAGTAGTGTTTAAGGTAGCGGGTAGCGTTTGACAAATTTATAATAAAGTTTTAAACAATATTCTTGCTTTTATTTTTATTTTATAGTATCAACCGCTACTTTTAACAAACACTCATATTAGTTGCCCGCTACTTTGACAGCTAACCGTTACCCGCTACTATTCACCGCTACTCGCTACTTTAACCGCTACCCGCTACTCAACCGCTAAACGCTACCCGCTACGGCTAATTTTGCCGAACAGGGCCATAATATATTTCACGAATTCACGGATCATATAATAAGAATGCCCTTTGGAGTTTCTGTGAAGCCATGCACTTACAACAAGCAATGAACAATCATCTACAACAAGGACTACAACTAAGTTAACGTCATAACTTGTAGGGGTTACCTGCCCTGCTATTTTTAATTCAATGTACTCCCTCAATTTATAAGATAACAATAATACGTTGATATCAAAACTTCTTCTGTACCGTTTTACTTCTTGGAATATTCATCATATATTCGTGAATTAAAATAGAGCAAGCGATTAATAACAAAATCTTGGTCATTTAGTTACAAATATAGATGCTTGTAATAGCCCATAACCTACTTAAGTAGTTAAGTGTTACTCTTGACTCTTGAGAGGATGACCTCTTAATGTGTTTTCTTCTTACCTACAGGAAAAAAAAGGAAAAAAAAAATGATACGCGATATTCCATACTCCGTACTACATTTGCATATTATGTACCAATGTAGACTAGTAGTAAAGACTGAGGATATGTTACGATAAGTATTCGGTTCGAATTCACCACCCCATTTATAATTTATATTATCCTTTATAGCTCATTCGCACCAAAGAAAAATACACATCTGCATTTTATGTAGTAATCAAACAATTTTTTAAAAAACTTTTTAAGGTAAGATAAAATGCCCCTCTTGATTTATCCTGACCTGAATTATCGGGCTATACATTATCAATGGCGAAGCTATGTGGGGACCTAGGTAGGCCATGGCCCCCCTAAGATTCTAGAAATATATACTAAAGGTTGTATTAATGAATAACTTTTTCTTCCTTAGCTGAGTTGGTATTTGAAGTTTGCTGCCAAAATGCTAGTTGCAAGTTCGAATCTAAATGCTAGCATTTCTTGTTTTTTTTTCTTGTTTTTTTTATTTATTATTTGTAATATTTGATAAATCTATCGTTCCTTTTTGCGAAATCCATNTTCTTGTTTTTTTTATTTATTATTTGTAATATTTGATAAATCTATCGTTCCTTTTTGCGAAATCCATTGAACTTATATTCGTTTCTCAATCTTCTTTTATTGTTTTCATTACATTTTTTAAGTGCTTTAGATTTTTTTATGAAGTATTATTCNATCTTCTTTTATTGTTTTCATTACATTTTTTAAGTGCTTTAGATTTTTTTATGAAGTATTATTCAATGGAAATAGATAATAAGTATGTTGCCCAACAAAATATATATACGTTTAATACTTAATATTGTTACTTAATTTTCGTTACCTAACTACTTTAAACATAACGGTACTTAGTCGGTGTTACTTAAAACTTCTTTGTTTATGGTGTCCAAGTATTTTAGGGTTCGTTTCTTCAAATATTAAAAAAAATTGGTCAATTTATATTTTACTATAATAAACAACAACAAAAACATAGTTGAATTGATTATTGAAATTGTAGTATTTTATTTTAGGGAATTAGACAAGTACTCCAATACAAAATTCCGGCCCCCCGTATACAAGAAATCTGGCTTCGCCCCTGTACATTATAGTCTGATAGTGAACACTCCGTACAACCGTATATTGTATATACCCATATGTGCATTCGGATTTTTATGCTATTCACAATCCTAACAAAATATTTTGGCTGAAATTTCAAAATAATTTTGACAGAAGAATTTGATGCGATCAGTGATGAACAGCAAAATATATCAAACAGTATTACAGATTTACAGTGTCGATCACAGAGCCTCACAGGAAAGACGGTGTAGCTCACATACTCTTATGGTGCCCTTAGTGGTGGACATATTCCTTTGCCAATTTTAGCTACACATCCACACCCATACAACTCAAAATAGCAAAATCTTTACTTGTCTTTTTGACAAAGAAAAATAGCAAAATCTTGAGGTTATAATTCTCTTTGTTTTGTACATATTGGTTTAAACTTTAAAATAGGCAAATTTGATCTAAAAAACACCAACTATGAGTCTATGACTTGGGTAGAACCAACAACACAATATTTGACTAATAGCGAAAACAACACTAAGTTTTGTAAAGAGTGCAATGTATGTCATAAATGGCACCGGCGGGCCTTATATTTTTTTTTGGAGACAAAGATCTATAATACTTTAATATGTTTTTAATATATATTTTTACTTGTTTTTTCCTCAACTCGTGTAACTTTACCTTAAATTTACCCCTTTTTTTGTTTCCTTAACTTGCCTACCTTCAAATAAAAAAGTACTAAATATCGATGATTATCTTTCTTCCTCAGAATCTACGGTTGGTGATATCATTTATGATATGTTTTGCACTTTGGAATCCAGGGTTGCCGAAATCATTTATGATATGCATTGCAGCCTTTGCAAAAGTTGGTGTTGTTCTGACCATTAGTCAAAAGTCTTGGTGTTGGCTATGTCCAAGCTATAGTTGGTAATGTTAAGGCCAATTTCGCCTTTAAAATAACCAATATATCAAACTTTATAGCGTTCATAATGAGCGAATTATTTTATACTTTGTATGTATGTTCTTGATTTCTTGGTAACGGGAACAGAGGGAAACTACAAATCTAAAGTATCTTACACAAGAACACCTGCAGATCGATCAATTATTGCTAAAATTCATCTAGATTGTTTGCTCAAATAATTAAAATGGTACTTCATTTTACAAACCTGATCAATTTTCTTAATTTGTACAACGTACATTTTCAATTTCCATAATTCTTTGTGGGACTTGAACCTTTATAGGCCTCTTTAAATTAGGGTAGGTGTCCCAAATTGATATGGGATCCAACCCACTCACACGTGCACATTGTTTTTGCAATTAAAAAAAAAACAGTAGTTTGACAATTGTAGGCAATCCCACTCTGCTTGCTTCCTGTTGGTTTTGGCCCCTCCAATGTCCAAAAACTTAAATGAGATGTGGAAAATATTTCCATTTTCACATGGTTTGATTTGGCTTCTTTTGTTTGTAATGGTCAATCTTTGAGTTATTATTTTGCAGGATTGAAAGATCAAATTTTCGTGTTTCCTGTTCTTTAATTTGTTTGGAGATGGTGCGTAAAGTAGTTGCAAATGTGTTTAGCTTTGTCTCTATAGTCTATTCCTTCCTTCATGTCTAG

mRNA sequence

ATGGGAATCGCAAGAATGATGAAGGAATCTGAGAAAAGAATGTCAAGCAGGAAATTAGGAAGATTTTTAAGGGAACAAAGAGGAAGACTTTACATTATTAGAAGGATTGAAAGATCAAATTTTCGTGTTTCCTGTTCTTTAATTTGTTTGGAGATGGTGCGTAAAGTAGTTGCAAATGTGTTTAGCTTTGTCTCTATAGTCTATTCCTTCCTTCATGTCTAG

Coding sequence (CDS)

ATGGGAATCGCAAGAATGATGAAGGAATCTGAGAAAAGAATGTCAAGCAGGAAATTAGGAAGATTTTTAAGGGAACAAAGAGGAAGACTTTACATTATTAGAAGGATTGAAAGATCAAATTTTCGTGTTTCCTGTTCTTTAATTTGTTTGGAGATGGTGCGTAAAGTAGTTGCAAATGTGTTTAGCTTTGTCTCTATAGTCTATTCCTTCCTTCATGTCTAG

Protein sequence

MGIARMMKESEKRMSSRKLGRFLREQRGRLYIIRRIERSNFRVSCSLICLEMVRKVVANVFSFVSIVYSFLHV
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo24101.1Spo24101.1mRNA


Homology
[Close]
BLAST of Spo24101.1 vs. NCBI nr
Match: gi|731315664|ref|XP_010692497.1| (PREDICTED: uncharacterized protein LOC104905605 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 58.9 bits (141), Expect = 4.200e-6
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 

		  

Query: 1  MGIARMMKESEKRMSSRKLGRFLREQRGRLYIIRR 36
          MG +RMMKESEKRMSSR+LGRFL EQRGRLYIIRR
Sbjct: 1  MGSSRMMKESEKRMSSRRLGRFLSEQRGRLYIIRR 35
[Close]
BLAST of Spo24101.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D2Q7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g026390 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.900e-6
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 

		  

Query: 1  MGIARMMKESEKRMSSRKLGRFLREQRGRLYIIRR 36
          MG +RMMKESEKRMSSR+LGRFL EQRGRLYIIRR
Sbjct: 1  MGSSRMMKESEKRMSSRRLGRFLSEQRGRLYIIRR 35
The following BLAST results are available for this feature:
BLAST of Spo24101.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|731315664|ref|XP_010692497.1|4.2e-688.5PREDICTED: uncharacterized pro... [more]
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BLAST of Spo24101.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0J8D2Q7_BETVU2.9e-688.5Uncharacterized protein OS=Bet... [more]
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BLAST of Spo24101.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo24101.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012552DVLPFAMPF08137DVLcoord: 24..35
score: 3.

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030244 cellulose biosynthetic process
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0006011 UDP-glucose metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009734 auxin-activated signaling pathway
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0016020 membrane
cellular_component GO:0005634 nucleus
molecular_function GO:0016760 cellulose synthase (UDP-forming) activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0046983 protein dimerization activity
RNA-Seq Expression