Spo24237 (gene) | SpinachBase

Overview


Name	Spo24237
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Vesicle-associated protein 1-4 (Plant VAP homolog 14) (AtPVA14) (VAMP-associated protein 1-4)
Location	chr2 : 47421991 .. 47424790 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAGTAATTTTGTACAGGAGTAATGTTTATGATTGGTTTTGCAAACTACTCTAAATAATTATTTCTCAAATATTGACTTAAGTTTTGTTGGGTTGGGGAATTAATTGTAGTGACAATGCAAGCACAAAAAGAAGCACCTGCTGACATGCAATGCAGAGACAAATTTCTTCTTCAGAGTGTGATTGCCAGCCCTGAAACTACCATTAAGGATATCACTTCTGATATGGTAATCCCTTTAACTATTGCCTTATCTCACTTTTTATAGCACATTTTATTTTAGTATCAAAAGAACATACCTTTTCTTTTTTTTACTATTAAATTTAATAAGTGCTCCGTATTTAATTAATTCTTTGTTTTTCTCCTTTCGAAGCACTAATCGAGCATATTGCTCATCGATTCAGCATGCCATACTGTTAGGAATAGTACGAGATAACAATCTAGACAAAACACACACAATATAAATAACGTGGTATACCCACGTCCCAACTTGTATTAGTAATCATCAAAACCGTTATTAACAATACAATCAATCAACCTCACAAGTATGTCTCTCAAAATATGGTCAAGCTCAGGATCTCAAGCATATCAATCATAATGGTATATAAATCTCTATTTATATACCCCAACTTCCTAACCTAGTGCCTCTAGAATTAGGAAACACAACATTAACAAAGATAACAATAATATAATTTCCTAATTAATATCTAAGTAAACTGGGAATTATCTTCTTAGAATCCTTGCTTGCCCACTAATTTTGATATTGGGAGACCTCCTTGCTGCCCAAGTAAATTGTTGCCTAATTACATTACTTTTCCTTGTAGTCATACGTAGTATATTAGGCAACAACAAAACTCACTGGCAATCTTTATCTCACGGCCCACTGCATTGATCCACTTTGACCCATTCGGGTCCGTGCGTACCATATTGGGTTTAAACATAACACATACTTTGCTTTAGACTAGCCTGAGCGATAATGCTTAATCAGTCAAATCTTGATTCATCAAACACCCAACGTGGTGGACGGAAATTCAATTTTAGGATTCATGTAGTGTAATGTGCTGTTGATGAAATGTGAAAATTTCACTTTTTATCATGTTTCCTTTGATAGTTTAACAAGGAATCTGGGAATCTTGTTGATGAGTGGAAATTGAAAGTCTCTTACGTTTCACCACCACAACCACCATCAGCTGTACACGAAGGATCAGATGAAGGTTCTGTGTCAGACAATGGGCACATGGATACTTTTTCAGCTGTGAGTACATCCATAGCTATTTCTTTATGCTTTCTTAAGCAGTTTCTCCAAAACTTTTCAAGTTATAAACGAGTTATGACTTTATTTGCAGGCTGCAAGAACCCATGTTGAGCCGGAAGATGATTCACGTCAGGTGATTTTTTTACCCTTCAAAGTTTTAACATTGAGTCAGATAGTAGATGCTTACAAATTACGAGTGTCTGATCATCAATGTTATCAATGTTGTACAGAGTATATGGTTTTAAGCTTTTGGTTTGAATACAATCAACCTTTGTTAGAAGTAATCATTTGATGGATGATTTCCTTGTAAATTTTTGAATTTCGGACTCAAGTTAGCAGAAGCGAATATCATGTGATAGAATACGTGATTTCTTTGACTGTGGTAGCTGGTAGGTATCTATATTCACACAACAAAATCATGAAGTATATGATGTGGGTCACCAACCAAACTCACCACTGAATTTGTTTATTGTTTTGAACGAACCAGGAATGTCTCTGATTCCTATAATCGGCTACTTATTTTGATAATTTTCATATTTTCAGGTGAACGCTACTATTTCTAGGCTGTTGGAAGAGAAAAACTCTGCCATTCAACAAAATAATAAGCTGCATCAAGAAATGGTACAGTTCTGGTTCTTGCTATTTTCCTTATTGCTTCTCATCCGTCCCTTAATACTCGCCCCGTTTTCCTTATAAAGCCGTCCCTTAACACTCGTCTCGGTTATATAAATGACATACTTTTACTAATATTATATCACTTCTCTCACTTACCATGGACCCACATGTATTCCCCTTTCCTTAAAAAAAACATGGATGTTCACTAGATTAGCAAAAAGAACATAGCTATTCTGCATTTACCTTGAAAACCTTGTTTCAAAAATAAACATTAGATTCTAACTGTGAAGCGTGCTTGTTTATGAGACTCATGACAAGTAAAAATCCCAGAGCTTGGGAAGATTATTTTGACATATTGCACATTTGCTATTCATTTTATGCATCAACTTGATACTGAAAACTTAATGAATGCAGGATCATATGAGGCGCGAAATAAGTAAAAAGCGTGCTACTATCCCATTCATGTATGTCATCATTGTTGGGGTTATTGGCATAATGCTGGGATATCTTGTCAAGAGAATATAAAGTTAAAGCTATGTGGAGGCTTCAAGTTAAAGCTGCTTATTCAGTTATCATTATCACTTTAAGAAGAAGCTGACCAGGAATTTTGGTTTGATTTGTCTGATATGAGCAACTGGTCGGTGTTAGTTCACGTTCTTTAGATTTTGCATTTCAATCATATTATCATACACATCAAGTTGTACAATTAGATAAAATAGTTAAACGATGATTAACTTTGTCATTAAGCTGTGCATTTCTTTGCTATTACTACATTGTTTGCTACAAAAGCACCAAAACATGTACACTATCTTCTCTCTTTCATGTTACAACATTGTTTGCTACAAAAGCATTAAAACATGTATGATGTATCTGCTCTGAAGGAGTATCATCTCTGCATTCAATAAATACTTCTCATTGTTGTCCAGAGACTGA

mRNA sequence

TAAGTAATTTTGTACAGGAGTAATGTTTATGATTGGTTTTGCAAACTACTCTAAATAATTATTTCTCAAATATTGACTTAAGTTTTGTTGGGTTGGGGAATTAATTGTAGTGACAATGCAAGCACAAAAAGAAGCACCTGCTGACATGCAATGCAGAGACAAATTTCTTCTTCAGAGTGTGATTGCCAGCCCTGAAACTACCATTAAGGATATCACTTCTGATATGTTTAACAAGGAATCTGGGAATCTTGTTGATGAGTGGAAATTGAAAGTCTCTTACGTTTCACCACCACAACCACCATCAGCTGTACACGAAGGATCAGATGAAGGTTCTGTGTCAGACAATGGGCACATGGATACTTTTTCAGCTGCTGCAAGAACCCATGTTGAGCCGGAAGATGATTCACGTCAGGTGAACGCTACTATTTCTAGGCTGTTGGAAGAGAAAAACTCTGCCATTCAACAAAATAATAAGCTGCATCAAGAAATGGATCATATGAGGCGCGAAATAAGTAAAAAGCGTGCTACTATCCCATTCATGTATGTCATCATTGTTGGGGTTATTGGCATAATGCTGGGATATCTTGTCAAGAGAATATAAAGTTAAAGCTATGTGGAGGCTTCAAGTTAAAGCTGCTTATTCAGTTATCATTATCACTTTAAGAAGAAGCTGACCAGGAATTTTGGTTTGATTTGTCTGATATGAGCAACTGGTCGGTGTTAGTTCACGTTCTTTAGATTTTGCATTTCAATCATATTATCATACACATCAAGTTGTACAATTAGATAAAATAGTTAAACGATGATTAACTTTGTCATTAAGCTGTGCATTTCTTTGCTATTACTACATTGTTTGCTACAAAAGCACCAAAACATGTACACTATCTTCTCTCTTTCATGTTACAACATTGTTTGCTACAAAAGCATTAAAACATGTATGATGTATCTGCTCTGAAGGAGTATCATCTCTGCATTCAATAAATACTTCTCATTGTTGTCCAGAGACTGA

Coding sequence (CDS)

ATGCAAGCACAAAAAGAAGCACCTGCTGACATGCAATGCAGAGACAAATTTCTTCTTCAGAGTGTGATTGCCAGCCCTGAAACTACCATTAAGGATATCACTTCTGATATGTTTAACAAGGAATCTGGGAATCTTGTTGATGAGTGGAAATTGAAAGTCTCTTACGTTTCACCACCACAACCACCATCAGCTGTACACGAAGGATCAGATGAAGGTTCTGTGTCAGACAATGGGCACATGGATACTTTTTCAGCTGCTGCAAGAACCCATGTTGAGCCGGAAGATGATTCACGTCAGGTGAACGCTACTATTTCTAGGCTGTTGGAAGAGAAAAACTCTGCCATTCAACAAAATAATAAGCTGCATCAAGAAATGGATCATATGAGGCGCGAAATAAGTAAAAAGCGTGCTACTATCCCATTCATGTATGTCATCATTGTTGGGGTTATTGGCATAATGCTGGGATATCTTGTCAAGAGAATATAA

Protein sequence

MQAQKEAPADMQCRDKFLLQSVIASPETTIKDITSDMFNKESGNLVDEWKLKVSYVSPPQPPSAVHEGSDEGSVSDNGHMDTFSAAARTHVEPEDDSRQVNATISRLLEEKNSAIQQNNKLHQEMDHMRREISKKRATIPFMYVIIVGVIGIMLGYLVKRI

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo24237.1	Spo24237.1	mRNA

Homology

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BLAST of Spo24237.1 vs. NCBI nr
Match: gi|902230066|gb|KNA21696.1| (hypothetical protein SOVF_040250 [Spinacia oleracea])

HSP 1 Score: 308.1 bits (788), Expect = 8.800e-81
Identity = 160/161 (99.38%), Postives = 160/161 (99.38%), Query Frame = 1

		  
Query: 1   MQAQKEAPADMQCRDKFLLQSVIASPETTIKDITSDMFNKESGNLVDEWKLKVSYVSPPQ 60
           MQAQKEAPADMQCRDKFLLQSVIASPETTIKDITSDMFNKESGNLVDEWKLKVSYVSPPQ
Sbjct: 71  MQAQKEAPADMQCRDKFLLQSVIASPETTIKDITSDMFNKESGNLVDEWKLKVSYVSPPQ 130

Query: 61  PPSAVHEGSDEGSVSDNGHMDTFSAAARTHVEPEDDSRQVNATISRLLEEKNSAIQQNNK 120
           PPSAVHEGSDEGSVSDNGHMDTFSAAA THVEPEDDSRQVNATISRLLEEKNSAIQQNNK
Sbjct: 131 PPSAVHEGSDEGSVSDNGHMDTFSAAAITHVEPEDDSRQVNATISRLLEEKNSAIQQNNK 190

Query: 121 LHQEMDHMRREISKKRATIPFMYVIIVGVIGIMLGYLVKRI 162
           LHQEMDHMRREISKKRATIPFMYVIIVGVIGIMLGYLVKRI
Sbjct: 191 LHQEMDHMRREISKKRATIPFMYVIIVGVIGIMLGYLVKRI 231

[Close]

BLAST of Spo24237.1 vs. NCBI nr
Match: gi|731361098|ref|XP_010692173.1| (PREDICTED: vesicle-associated protein 1-2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 261.2 bits (666), Expect = 1.200e-66
Identity = 128/161 (79.50%), Postives = 149/161 (92.55%), Query Frame = 1

		  
Query: 1   MQAQKEAPADMQCRDKFLLQSVIASPETTIKDITSDMFNKESGNLVDEWKLKVSYVSPPQ 60
           MQAQKE+PADMQC+DKFLLQSVI +PE T+KDITSDMFNK+SGNL+DEWKLKVSY+SPPQ
Sbjct: 71  MQAQKESPADMQCKDKFLLQSVITTPEITVKDITSDMFNKDSGNLIDEWKLKVSYISPPQ 130

Query: 61  PPSAVHEGSDEGSVSDNGHMDTFSAAARTHVEPEDDSRQVNATISRLLEEKNSAIQQNNK 120
           PPSAV EGSDEGSVSDNG  D ++AA RT VEPEDDS QVNA ISRL+EEKNSAIQQNNK
Sbjct: 131 PPSAVQEGSDEGSVSDNGIFDAYAAAPRTQVEPEDDSSQVNAMISRLMEEKNSAIQQNNK 190

Query: 121 LHQEMDHMRREISKKRATIPFMYVIIVGVIGIMLGYLVKRI 162
           LHQEM+H+RR+IS+KRA IPF+YV +VG+IG+++GYLVK+I
Sbjct: 191 LHQEMEHLRRKISQKRAAIPFIYVFLVGLIGVLVGYLVKKI 231

[Close]

BLAST of Spo24237.1 vs. NCBI nr
Match: gi|747091190|ref|XP_011093316.1| (PREDICTED: vesicle-associated protein 1-1 [Sesamum indicum])

HSP 1 Score: 192.6 bits (488), Expect = 5.400e-46
Identity = 105/169 (62.13%), Postives = 131/169 (77.51%), Query Frame = 1

		  
Query: 1   MQAQKEAPADMQCRDKFLLQSVIASPETTIKDITSDMFNKESGNLVDEWKLKVSYVSPPQ 60
           MQAQKEAP DMQCRDKFLLQSV+ +P TT KDIT DMFNK+SGN VDE KL+V+YV PPQ
Sbjct: 71  MQAQKEAPPDMQCRDKFLLQSVVVNPGTTAKDITPDMFNKDSGNQVDECKLRVAYVPPPQ 130

Query: 61  PPSAVHEGSDEG-----SVSDNGHMD---TFSAAARTHVEPEDDSRQVNATISRLLEEKN 120
           PPS V EGS+EG     SVSDNG ++    F+  +++  EP++ + +V A IS+L EEK 
Sbjct: 131 PPSPVREGSEEGSSPRASVSDNGTLNQASDFNMTSKSIFEPQESTPEVKALISKLTEEKR 190

Query: 121 SAIQQNNKLHQEMDHMRREISKKRATIPFMYVIIVGVIGIMLGYLVKRI 162
            AIQQNNKL QE++ +RR+ +K +  IP MYVIIVG+IGI+LGYL+KRI
Sbjct: 191 FAIQQNNKLQQELELLRRQGNKSQGGIPLMYVIIVGLIGILLGYLLKRI 239

[Close]

BLAST of Spo24237.1 vs. NCBI nr
Match: gi|697182556|ref|XP_009600288.1| (PREDICTED: vesicle-associated protein 1-2 [Nicotiana tomentosiformis])

HSP 1 Score: 192.6 bits (488), Expect = 5.400e-46
Identity = 104/165 (63.03%), Postives = 130/165 (78.79%), Query Frame = 1

		  
Query: 1   MQAQKEAPADMQCRDKFLLQSVIASPETTIKDITSDMFNKESGNLVDEWKLKVSYVSPPQ 60
           MQAQKEAP DMQC+DKFLLQSV+A P TT KDIT +MFNKESGN VDE KL+V+YV PPQ
Sbjct: 71  MQAQKEAPPDMQCKDKFLLQSVVAGPGTTPKDITPEMFNKESGNHVDECKLRVAYV-PPQ 130

Query: 61  PPSAVHEGSDEGS-----VSDNGHMDTFSAAARTHVEPEDDSRQVNATISRLLEEKNSAI 120
           PPS V EGS+EGS     +S+NG    F  A+RT+ EP+D+S +  A I +L EEKNSA+
Sbjct: 131 PPSPVQEGSEEGSSPRASISENGA--EFHNASRTYAEPQDNSSEAKALILKLTEEKNSAM 190

Query: 121 QQNNKLHQEMDHMRREISKKRATIPFMYVIIVGVIGIMLGYLVKR 161
           QQ+NKL QE++ ++RE S+ R  IPFMYV+IVG++GI LGYL+K+
Sbjct: 191 QQSNKLQQELEFLKRESSRSRGGIPFMYVVIVGLLGIFLGYLLKK 232

[Close]

BLAST of Spo24237.1 vs. NCBI nr
Match: gi|460367860|ref|XP_004229788.1| (PREDICTED: vesicle-associated protein 1-1 [Solanum lycopersicum])

HSP 1 Score: 191.0 bits (484), Expect = 1.600e-45
Identity = 105/165 (63.64%), Postives = 130/165 (78.79%), Query Frame = 1

		  
Query: 1   MQAQKEAPADMQCRDKFLLQSVIASPETTIKDITSDMFNKESGNLVDEWKLKVSYVSPPQ 60
           MQAQKEAP DMQC+DKFLLQSVI SP TT KDIT +MFNKESGN V+E KL+V+YV P +
Sbjct: 71  MQAQKEAPPDMQCKDKFLLQSVIVSPRTTAKDITPEMFNKESGNHVEEVKLRVAYVLP-K 130

Query: 61  PPSAVHEGSDEGS-----VSDNGHMDTFSAAARTHVEPEDDSRQVNATISRLLEEKNSAI 120
           PPS V EGS+EGS     +S+NG    F  A+RT+ EP+D+S +  A I +L EEK SAI
Sbjct: 131 PPSPVREGSEEGSSPRASISENGA--EFHNASRTYAEPQDNSSETKALILKLSEEKKSAI 190

Query: 121 QQNNKLHQEMDHMRREISKKRATIPFMYVIIVGVIGIMLGYLVKR 161
           QQNNKL QE++ +RRE SK+R  IPFMYVIIVG++G++LGYL+K+
Sbjct: 191 QQNNKLQQELELLRRESSKRRGGIPFMYVIIVGLVGLLLGYLLKK 232

[Close]

BLAST of Spo24237.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQ92_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_040250 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 6.100e-81
Identity = 160/161 (99.38%), Postives = 160/161 (99.38%), Query Frame = 1

		  
Query: 1   MQAQKEAPADMQCRDKFLLQSVIASPETTIKDITSDMFNKESGNLVDEWKLKVSYVSPPQ 60
           MQAQKEAPADMQCRDKFLLQSVIASPETTIKDITSDMFNKESGNLVDEWKLKVSYVSPPQ
Sbjct: 71  MQAQKEAPADMQCRDKFLLQSVIASPETTIKDITSDMFNKESGNLVDEWKLKVSYVSPPQ 130

Query: 61  PPSAVHEGSDEGSVSDNGHMDTFSAAARTHVEPEDDSRQVNATISRLLEEKNSAIQQNNK 120
           PPSAVHEGSDEGSVSDNGHMDTFSAAA THVEPEDDSRQVNATISRLLEEKNSAIQQNNK
Sbjct: 131 PPSAVHEGSDEGSVSDNGHMDTFSAAAITHVEPEDDSRQVNATISRLLEEKNSAIQQNNK 190

Query: 121 LHQEMDHMRREISKKRATIPFMYVIIVGVIGIMLGYLVKRI 162
           LHQEMDHMRREISKKRATIPFMYVIIVGVIGIMLGYLVKRI
Sbjct: 191 LHQEMDHMRREISKKRATIPFMYVIIVGVIGIMLGYLVKRI 231

[Close]

BLAST of Spo24237.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BGD9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g018610 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 8.600e-67
Identity = 128/161 (79.50%), Postives = 149/161 (92.55%), Query Frame = 1

		  
Query: 1   MQAQKEAPADMQCRDKFLLQSVIASPETTIKDITSDMFNKESGNLVDEWKLKVSYVSPPQ 60
           MQAQKE+PADMQC+DKFLLQSVI +PE T+KDITSDMFNK+SGNL+DEWKLKVSY+SPPQ
Sbjct: 71  MQAQKESPADMQCKDKFLLQSVITTPEITVKDITSDMFNKDSGNLIDEWKLKVSYISPPQ 130

Query: 61  PPSAVHEGSDEGSVSDNGHMDTFSAAARTHVEPEDDSRQVNATISRLLEEKNSAIQQNNK 120
           PPSAV EGSDEGSVSDNG  D ++AA RT VEPEDDS QVNA ISRL+EEKNSAIQQNNK
Sbjct: 131 PPSAVQEGSDEGSVSDNGIFDAYAAAPRTQVEPEDDSSQVNAMISRLMEEKNSAIQQNNK 190

Query: 121 LHQEMDHMRREISKKRATIPFMYVIIVGVIGIMLGYLVKRI 162
           LHQEM+H+RR+IS+KRA IPF+YV +VG+IG+++GYLVK+I
Sbjct: 191 LHQEMEHLRRKISQKRAAIPFIYVFLVGLIGVLVGYLVKKI 231

[Close]

BLAST of Spo24237.1 vs. UniProtKB/TrEMBL
Match: A0A0V0HWS6_SOLCH (Putative vesicle-associated protein 1-1-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 6.400e-46
Identity = 104/165 (63.03%), Postives = 128/165 (77.58%), Query Frame = 1

		  
Query: 1   MQAQKEAPADMQCRDKFLLQSVIASPETTIKDITSDMFNKESGNLVDEWKLKVSYVSPPQ 60
           MQAQKEAP DMQC+DKFLLQSVI SP TT KDIT +MFNKESGN V+E KL+V+YV P  
Sbjct: 71  MQAQKEAPPDMQCKDKFLLQSVIVSPGTTAKDITPEMFNKESGNHVEEVKLRVAYVPPQP 130

Query: 61  PPSAVHEGSDEG-----SVSDNGHMDTFSAAARTHVEPEDDSRQVNATISRLLEEKNSAI 120
           PPS V EGS+EG     S+S+NG    F  A+RT+ EP+D+S +  A I +L EEK SAI
Sbjct: 131 PPSPVREGSEEGSSPRASISENG--AEFHNASRTYAEPQDNSSETKALILKLSEEKKSAI 190

Query: 121 QQNNKLHQEMDHMRREISKKRATIPFMYVIIVGVIGIMLGYLVKR 161
           QQNNKL QE++ +RRE S++R  IPFMYVIIVG++G+ LGYL+K+
Sbjct: 191 QQNNKLQQELELLRRESSRRRGGIPFMYVIIVGLVGLFLGYLLKK 233

[Close]

BLAST of Spo24237.1 vs. UniProtKB/TrEMBL
Match: K4AZ32_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.100e-45
Identity = 105/165 (63.64%), Postives = 130/165 (78.79%), Query Frame = 1

		  
Query: 1   MQAQKEAPADMQCRDKFLLQSVIASPETTIKDITSDMFNKESGNLVDEWKLKVSYVSPPQ 60
           MQAQKEAP DMQC+DKFLLQSVI SP TT KDIT +MFNKESGN V+E KL+V+YV P +
Sbjct: 71  MQAQKEAPPDMQCKDKFLLQSVIVSPRTTAKDITPEMFNKESGNHVEEVKLRVAYVLP-K 130

Query: 61  PPSAVHEGSDEGS-----VSDNGHMDTFSAAARTHVEPEDDSRQVNATISRLLEEKNSAI 120
           PPS V EGS+EGS     +S+NG    F  A+RT+ EP+D+S +  A I +L EEK SAI
Sbjct: 131 PPSPVREGSEEGSSPRASISENGA--EFHNASRTYAEPQDNSSETKALILKLSEEKKSAI 190

Query: 121 QQNNKLHQEMDHMRREISKKRATIPFMYVIIVGVIGIMLGYLVKR 161
           QQNNKL QE++ +RRE SK+R  IPFMYVIIVG++G++LGYL+K+
Sbjct: 191 QQNNKLQQELELLRRESSKRRGGIPFMYVIIVGLVGLLLGYLLKK 232

[Close]

BLAST of Spo24237.1 vs. UniProtKB/TrEMBL
Match: A0A068UM09_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028888001 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.400e-45
Identity = 106/185 (57.30%), Postives = 132/185 (71.35%), Query Frame = 1

		  
Query: 1   MQAQKEAPADMQCRDKFLLQSVIASPETTIKDITSDMFNKESGNLVDEWKLKVSYVSPPQ 60
           MQAQKEAP DMQC+DKFL+QSV+ASP  T KDITSD+FNKE G+ V+E KL+V+YV+PPQ
Sbjct: 71  MQAQKEAPVDMQCKDKFLVQSVLASPGATAKDITSDLFNKEEGHNVEEIKLRVAYVAPPQ 130

Query: 61  PPSAVHEGSDEG-----SVSDNGHMDT--FSAAARTHVEPE------------------D 120
           PPS V EGS+EG     SVSDNG +    FSA  RTH EP+                  D
Sbjct: 131 PPSPVREGSEEGSSPRASVSDNGTISASEFSAGTRTHAEPQVLRSHAEAQGLKSNVESVD 190

Query: 121 DSRQVNATISRLLEEKNSAIQQNNKLHQEMDHMRREISKKRATIPFMYVIIVGVIGIMLG 161
           +S +V A IS+L EEKN A+QQ NKL QE+D +RRE ++ R  IP MYVIIVG++G++LG
Sbjct: 191 NSSEVKALISKLTEEKNYAVQQRNKLQQELDLLRRESNRSRGGIPLMYVIIVGLLGLLLG 250

[Close]

BLAST of Spo24237.1 vs. ExPASy Swiss-Prot
Match: VAP12_ARATH (Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.000e-44
Identity = 96/169 (56.80%), Postives = 130/169 (76.92%), Query Frame = 1

		  
Query: 1   MQAQKEAPADMQCRDKFLLQSVIASPETTIKDITSDMFNKESGNLVDEWKLKVSYVSPPQ 60
           MQAQKEAPAD+QC+DKFLLQ V+ASP  T KD+T +MF+KE+G+ V+E KL+V YV+PP+
Sbjct: 70  MQAQKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEETKLRVVYVAPPR 129

Query: 61  PPSAVHEGSDEG-----SVSDNGHMDTFSAAAR---THVEPEDDSRQVNATISRLLEEKN 120
           PPS V EGS+EG     SVSDNG+   F+AA R     V+ +D+S +  A +++L EEKN
Sbjct: 130 PPSPVREGSEEGSSPRASVSDNGNASDFTAAPRFSADRVDAQDNSSEARALVTKLTEEKN 189

Query: 121 SAIQQNNKLHQEMDHMRREISK-KRATIPFMYVIIVGVIGIMLGYLVKR 161
           SA+Q NN+L QE+D +RRE  + K   IPFMYV++VG+IG++LGY++KR
Sbjct: 190 SAVQLNNRLQQELDQLRRESKRSKSGGIPFMYVLLVGLIGLILGYIMKR 238

[Close]

BLAST of Spo24237.1 vs. ExPASy Swiss-Prot
Match: VAP11_ARATH (Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.800e-42
Identity = 93/169 (55.03%), Postives = 127/169 (75.15%), Query Frame = 1

		  
Query: 1   MQAQKEAPADMQCRDKFLLQSVIASPETTIKDITSDMFNKESGNLVDEWKLKVSYVSPPQ 60
           MQAQKEAP+DMQC+DKFLLQ VIASP  T K++T +MF+KE+G+ V+E KL+V+YV+PP+
Sbjct: 87  MQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKLRVTYVAPPR 146

Query: 61  PPSAVHEGSDEG-----SVSDNGHMDTFS---AAARTHVEPEDDSRQVNATISRLLEEKN 120
           PPS VHEGS+EG     SVSDNGH   FS            ++++ +  A I++L EEK 
Sbjct: 147 PPSPVHEGSEEGSSPRASVSDNGHGSEFSFERFIVDNKAGHQENTSEARALITKLTEEKQ 206

Query: 121 SAIQQNNKLHQEMDHMRREISKKRA-TIPFMYVIIVGVIGIMLGYLVKR 161
           SAIQ NN+L +E+D +RRE  K ++  IPFMYV++VG+IG++LGY++KR
Sbjct: 207 SAIQLNNRLQRELDQLRRESKKSQSGGIPFMYVLLVGLIGLILGYIMKR 255

[Close]

BLAST of Spo24237.1 vs. ExPASy Swiss-Prot
Match: VAP13_ARATH (Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.100e-29
Identity = 75/169 (44.38%), Postives = 116/169 (68.64%), Query Frame = 1

		  
Query: 1   MQAQKEAPADMQCRDKFLLQSVIASPETTIKDITSDMFNKESGNLVDEWKLKVSYVSPPQ 60
           MQAQKEAP DMQC+DKFL+Q+V+ S  TT K++ ++MFNKE+G +++++KL+V Y+ P  
Sbjct: 72  MQAQKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDFKLRVVYI-PAN 131

Query: 61  PPSAVHEGSDEG-----SVSD--NGHMDTFSAAARTHVEPEDDSRQVNATISRLLEEKNS 120
           PPS V EGS+EG     S++D  +     F   +RT  E  + S +  + IS+L EEK S
Sbjct: 132 PPSPVPEGSEEGNSPMASLNDIASQSASLFDDVSRTFEETSEKSSEAWSMISKLTEEKTS 191

Query: 121 AIQQNNKLHQEMDHMRREISKKRA-TIPFMYVIIVGVIGIMLGYLVKRI 162
           A QQ+ KL  E++ +R+E SKK++     + +++VG++G ++GYL+ RI
Sbjct: 192 ATQQSQKLRLELEMLRKETSKKQSGGHSLLLMLLVGLLGCVIGYLLNRI 239

[Close]

BLAST of Spo24237.1 vs. ExPASy Swiss-Prot
Match: VAP14_ARATH (Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.400e-22
Identity = 53/84 (63.10%), Postives = 65/84 (77.38%), Query Frame = 1

		  
Query: 1   MQAQKEAPADMQCRDKFLLQSVIASPETTIKDITSDMFNKESGNLVDEWKLKVSYVSPPQ 60
           MQA KEAPADMQCRDK L Q  +  PETT KD+TS+MF+KE+G+  +E +LKV YV+PPQ
Sbjct: 241 MQALKEAPADMQCRDKLLFQCKVVEPETTAKDVTSEMFSKEAGHPAEETRLKVMYVTPPQ 300

Query: 61  PPSAVHEGSDEG-----SVSDNGH 80
           PPS V EG++EG     SVSDNG+
Sbjct: 301 PPSPVQEGTEEGSSPRASVSDNGN 324

[Close]

BLAST of Spo24237.1 vs. ExPASy Swiss-Prot
Match: VAP21_ARATH (Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 7.300e-19
Identity = 55/161 (34.16%), Postives = 93/161 (57.76%), Query Frame = 1

		  
Query: 1   MQAQKEAPADMQCRDKFLLQSVIASPETTIKDITSDMFNKESGNLVDEWKLKVSYVSPPQ 60
           +QAQ+E P DMQC+DKFLLQS I  P T + ++  D F K+SG  + E KLKVSY++P  
Sbjct: 74  LQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVSYITP-- 133

Query: 61  PPSAVHEGSDEGSVSDNGHMDTFSAAARTHVEPEDDSRQVNATISRLLEEKNSAIQQNNK 120
             S     S+ G+ + +G                  S +  +TI RL EE+++A++Q  +
Sbjct: 134 --STTQRSSESGATNGDGQ-----------------SSETISTIQRLKEERDAAVKQTQQ 193

Query: 121 LHQEMDHMRREISKKRA--TIPFMYVIIVGVIGIMLGYLVK 160
           L  E++ +RR  +++ +   +      +VG+IG+++G+++K
Sbjct: 194 LQHELETVRRRRNQRNSGNGLSLKLAAMVGLIGLIIGFILK 213

[Close]

BLAST of Spo24237.1 vs. TAIR (Arabidopsis)
Match: AT2G45140.1 (plant VAP homolog 12)

HSP 1 Score: 181.0 bits (458), Expect = 5.700e-46
Identity = 96/169 (56.80%), Postives = 130/169 (76.92%), Query Frame = 1

		  
Query: 1   MQAQKEAPADMQCRDKFLLQSVIASPETTIKDITSDMFNKESGNLVDEWKLKVSYVSPPQ 60
           MQAQKEAPAD+QC+DKFLLQ V+ASP  T KD+T +MF+KE+G+ V+E KL+V YV+PP+
Sbjct: 70  MQAQKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEETKLRVVYVAPPR 129

Query: 61  PPSAVHEGSDEG-----SVSDNGHMDTFSAAAR---THVEPEDDSRQVNATISRLLEEKN 120
           PPS V EGS+EG     SVSDNG+   F+AA R     V+ +D+S +  A +++L EEKN
Sbjct: 130 PPSPVREGSEEGSSPRASVSDNGNASDFTAAPRFSADRVDAQDNSSEARALVTKLTEEKN 189

Query: 121 SAIQQNNKLHQEMDHMRREISK-KRATIPFMYVIIVGVIGIMLGYLVKR 161
           SA+Q NN+L QE+D +RRE  + K   IPFMYV++VG+IG++LGY++KR
Sbjct: 190 SAVQLNNRLQQELDQLRRESKRSKSGGIPFMYVLLVGLIGLILGYIMKR 238

[Close]

BLAST of Spo24237.1 vs. TAIR (Arabidopsis)
Match: AT3G60600.1 (vesicle associated protein)

HSP 1 Score: 172.9 bits (437), Expect = 1.600e-43
Identity = 93/169 (55.03%), Postives = 127/169 (75.15%), Query Frame = 1

		  
Query: 1   MQAQKEAPADMQCRDKFLLQSVIASPETTIKDITSDMFNKESGNLVDEWKLKVSYVSPPQ 60
           MQAQKEAP+DMQC+DKFLLQ VIASP  T K++T +MF+KE+G+ V+E KL+V+YV+PP+
Sbjct: 87  MQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKLRVTYVAPPR 146

Query: 61  PPSAVHEGSDEG-----SVSDNGHMDTFS---AAARTHVEPEDDSRQVNATISRLLEEKN 120
           PPS VHEGS+EG     SVSDNGH   FS            ++++ +  A I++L EEK 
Sbjct: 147 PPSPVHEGSEEGSSPRASVSDNGHGSEFSFERFIVDNKAGHQENTSEARALITKLTEEKQ 206

Query: 121 SAIQQNNKLHQEMDHMRREISKKRA-TIPFMYVIIVGVIGIMLGYLVKR 161
           SAIQ NN+L +E+D +RRE  K ++  IPFMYV++VG+IG++LGY++KR
Sbjct: 207 SAIQLNNRLQRELDQLRRESKKSQSGGIPFMYVLLVGLIGLILGYIMKR 255

[Close]

BLAST of Spo24237.1 vs. TAIR (Arabidopsis)
Match: AT4G00170.1 (Plant VAMP (vesicle-associated membrane protein) family protein)

HSP 1 Score: 130.2 bits (326), Expect = 1.200e-30
Identity = 75/169 (44.38%), Postives = 116/169 (68.64%), Query Frame = 1

		  
Query: 1   MQAQKEAPADMQCRDKFLLQSVIASPETTIKDITSDMFNKESGNLVDEWKLKVSYVSPPQ 60
           MQAQKEAP DMQC+DKFL+Q+V+ S  TT K++ ++MFNKE+G +++++KL+V Y+ P  
Sbjct: 72  MQAQKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDFKLRVVYI-PAN 131

Query: 61  PPSAVHEGSDEG-----SVSD--NGHMDTFSAAARTHVEPEDDSRQVNATISRLLEEKNS 120
           PPS V EGS+EG     S++D  +     F   +RT  E  + S +  + IS+L EEK S
Sbjct: 132 PPSPVPEGSEEGNSPMASLNDIASQSASLFDDVSRTFEETSEKSSEAWSMISKLTEEKTS 191

Query: 121 AIQQNNKLHQEMDHMRREISKKRA-TIPFMYVIIVGVIGIMLGYLVKRI 162
           A QQ+ KL  E++ +R+E SKK++     + +++VG++G ++GYL+ RI
Sbjct: 192 ATQQSQKLRLELEMLRKETSKKQSGGHSLLLMLLVGLLGCVIGYLLNRI 239

[Close]

BLAST of Spo24237.1 vs. TAIR (Arabidopsis)
Match: AT1G51270.3 (structural molecules;transmembrane receptors;structural molecules)

HSP 1 Score: 106.7 bits (265), Expect = 1.400e-23
Identity = 53/84 (63.10%), Postives = 65/84 (77.38%), Query Frame = 1

		  
Query: 1   MQAQKEAPADMQCRDKFLLQSVIASPETTIKDITSDMFNKESGNLVDEWKLKVSYVSPPQ 60
           MQA KEAPADMQCRDK L Q  +  PETT KD+TS+MF+KE+G+  +E +LKV YV+PPQ
Sbjct: 241 MQALKEAPADMQCRDKLLFQCKVVEPETTAKDVTSEMFSKEAGHPAEETRLKVMYVTPPQ 300

Query: 61  PPSAVHEGSDEG-----SVSDNGH 80
           PPS V EG++EG     SVSDNG+
Sbjct: 301 PPSPVQEGTEEGSSPRASVSDNGN 324

[Close]

BLAST of Spo24237.1 vs. TAIR (Arabidopsis)
Match: AT5G47180.1 (Plant VAMP (vesicle-associated membrane protein) family protein)

HSP 1 Score: 95.1 bits (235), Expect = 4.100e-20
Identity = 55/161 (34.16%), Postives = 93/161 (57.76%), Query Frame = 1

		  
Query: 1   MQAQKEAPADMQCRDKFLLQSVIASPETTIKDITSDMFNKESGNLVDEWKLKVSYVSPPQ 60
           +QAQ+E P DMQC+DKFLLQS I  P T + ++  D F K+SG  + E KLKVSY++P  
Sbjct: 74  LQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVSYITP-- 133

Query: 61  PPSAVHEGSDEGSVSDNGHMDTFSAAARTHVEPEDDSRQVNATISRLLEEKNSAIQQNNK 120
             S     S+ G+ + +G                  S +  +TI RL EE+++A++Q  +
Sbjct: 134 --STTQRSSESGATNGDGQ-----------------SSETISTIQRLKEERDAAVKQTQQ 193

Query: 121 LHQEMDHMRREISKKRA--TIPFMYVIIVGVIGIMLGYLVK 160
           L  E++ +RR  +++ +   +      +VG+IG+++G+++K
Sbjct: 194 LQHELETVRRRRNQRNSGNGLSLKLAAMVGLIGLIIGFILK 213

The following BLAST results are available for this feature:

BLAST of Spo24237.1 vs. NCBI nr
BLAST of Spo24237.1 vs. UniProtKB/TrEMBL
BLAST of Spo24237.1 vs. ExPASy Swiss-Prot
BLAST of Spo24237.1 vs. TAIR (Arabidopsis)

BLAST of Spo24237.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902230066\|gb\|KNA21696.1\|	8.8e-81	99.3	hypothetical protein SOVF_0402...	[more]
gi\|731361098\|ref\|XP_010692173.1\|	1.2e-66	79.5	PREDICTED: vesicle-associated ...	[more]
gi\|747091190\|ref\|XP_011093316.1\|	5.4e-46	62.1	PREDICTED: vesicle-associated ...	[more]
gi\|697182556\|ref\|XP_009600288.1\|	5.4e-46	63.0	PREDICTED: vesicle-associated ...	[more]
gi\|460367860\|ref\|XP_004229788.1\|	1.6e-45	63.6	PREDICTED: vesicle-associated ...	[more]

BLAST of Spo24237.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9RQ92_SPIOL	6.1e-81	99.3	Uncharacterized protein OS=Spi...	[more]
A0A0J8BGD9_BETVU	8.6e-67	79.5	Uncharacterized protein OS=Bet...	[more]
A0A0V0HWS6_SOLCH	6.4e-46	63.0	Putative vesicle-associated pr...	[more]
K4AZ32_SOLLC	1.1e-45	63.6	Uncharacterized protein OS=Sol...	[more]
A0A068UM09_COFCA	1.4e-45	57.3	Uncharacterized protein OS=Cof...	[more]

BLAST of Spo24237.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
VAP12_ARATH	1.0e-44	56.8	Vesicle-associated protein 1-2...	[more]
VAP11_ARATH	2.8e-42	55.0	Vesicle-associated protein 1-1...	[more]
VAP13_ARATH	2.1e-29	44.3	Vesicle-associated protein 1-3...	[more]
VAP14_ARATH	2.4e-22	63.1	Vesicle-associated protein 1-4...	[more]
VAP21_ARATH	7.3e-19	34.1	Vesicle-associated protein 2-1...	[more]

BLAST of Spo24237.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
AT2G45140.1	5.7e-46	56.8	plant VAP homolog 12	[more]
AT3G60600.1	1.6e-43	55.0	vesicle associated protein	[more]
AT4G00170.1	1.2e-30	44.3	Plant VAMP (vesicle-associated...	[more]
AT1G51270.3	1.4e-23	63.1	structural molecules;transmemb...	[more]
AT5G47180.1	4.1e-20	34.1	Plant VAMP (vesicle-associated...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000535	Major sperm protein (MSP) domain	PROFILE	PS50202	MSP	coord: 1..56 score: 8
IPR008962	PapD-like	GENE3D	2.60.40.360		coord: 1..56 score: 3.
IPR008962	PapD-like	unknown	SSF49354	PapD-like	coord: 1..71 score: 7.59
IPR016763	Vesicle-associated membrane-protein-associated protein	PANTHER	PTHR10809	VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN	coord: 1..160 score: 4.2
None	No IPR available	unknown	Coil	Coil	coord: 104..138 scor
None	No IPR available	PANTHER	PTHR10809:SF50	VESICLE-ASSOCIATED PROTEIN 1-1-RELATED	coord: 1..160 score: 4.2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019748	secondary metabolic process
biological_process	GO:0006733	oxidoreduction coenzyme metabolic process
biological_process	GO:0008152	metabolic process
biological_process	GO:0006119	oxidative phosphorylation
biological_process	GO:0042967	obsolete acyl-carrier-protein biosynthetic process
biological_process	GO:0006766	vitamin metabolic process
biological_process	GO:0006636	unsaturated fatty acid biosynthetic process
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0016310	phosphorylation
biological_process	GO:0009117	nucleotide metabolic process
biological_process	GO:0009106	lipoate metabolic process
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0009695	jasmonic acid biosynthetic process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0006546	glycine catabolic process
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0009108	coenzyme biosynthetic process
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0042545	cell wall modification
biological_process	GO:0030154	cell differentiation
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0009536	plastid
cellular_component	GO:0000275	mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0008253	5'-nucleotidase activity
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0046961	proton-transporting ATPase activity, rotational mechanism
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism
molecular_function	GO:0008080	N-acetyltransferase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo11116	0.69	Barchart \| Table
Spo00616	0.67	Barchart \| Table
Spo05078	0.67	Barchart \| Table
Spo00921	0.66	Barchart \| Table
Spo09753	0.66	Barchart \| Table
Spo00600	0.65	Barchart \| Table