Spo24359 (gene) | SpinachBase

Overview


Name	Spo24359
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Biogenesis of lysosome-related organelles complex 1 subunit 2 (BLOC-1 subunit 2)
Location	SpoScf_00739 : 115636 .. 121559 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACGTGGACGGGTGAACCTAGTTGCAGTCTTGCATGTGCATAGCAGTATAACCCTTGAAAATGGACATGAAAACGACCGGTCCACTCAAATTGACAGCACTAAACCCACATTGTCAATGGGCCAAAACCCAAATTACTTTTTTTAATTCTTTTTATTAAAAACTAAAAAATCTTAACAGTTTTGCCAAAACTCCATCTACCCCCTTCTCAGTTCTCAATTTCTCCCTCGTCATCAAATCATTGTCTTCATCTTTCAAATTCATCCCTCTGATTTCAGTTTGTGCAATTTCAATCACAGAGCCTCAAAATTGTAAAAATGGCGGAAAATGAGGTAGGTAAGGAACAACAAGATCAACCTGACGAACTTGCAGATGCTCTTGATGATCTCTTTAATGGCGTTTCCACCATGATCAAGTCCGAGCTTCAGGTTCATTTCCTCCTCTTTTTCTATCTCATCGACGTCTTTTAGCATTTAGCATTAAAACAGCAATAGTAATTTATAGACCAGTAGTTAGATTACTAAAATCTCTGTTGATCAATTATTGTTTTGTTTTGTTAATCTAGGGTTTATCAAAATCTCCAAGATTTATCTGACTATGTTAAGAAATCAAGTTAATTGTTCTGATTGTTTCACCTTATTCGATTTTCTATGATTATTGATTGTGTAGAATTGGTTGAAGCGACGAACGGTATTGTACAATTTGTACCAAAAGAGGTTCTTGGCCTGAAGCTTTTTCCCACTCCTTTGAGGTTTAACCTTGATTTTGAATGGAGTTTCCCCCTTGGCATACCTAGGTGACAAGATTCTTGTACCCTCTCTACGTGGGATCATTTTTCCAAAGATAATTTTCCATTACCCAATATTCCTCATACTAGTAGCGTACAACAATTTCCTGGGTGTCTTTGGGTCTAATTGCATCATCAGATAATCGAATCTTGAGATTCCACTCAATATGTGGAAGTGTGATGATGAAAGTCTAGTTTGTTAAGAATAACTGTGCATTGGAGTTCAAGAGCATTAAAGTTTCAGTTTCTGAACTATGTATATCAACTACTCCTTACTTGTTATTTATGCAGCTATAACTTTTCTTTTGGAGTTGTTATTTATGCATCTATAACTTTTCGTTTGAGTTGGGGGTGTAATTTGGCTTTGCTAGATCTGAATGGGAGTAGTATCTCAACAGAATGGAAAATGGCAAAATGCCTGTTGATTTGGAAGTATAGTTGTGCGGTTGTAGTATTACCCTTGTTAGATTGGAAGTTTTGGTTGTAGTATTACCCTTGTTAGATTGGAAGTTTAGGAGGAGTGAAATTTAAAACTTGTGCGTAAGGTTACTACAATTGGGCAATCTAGAGATGGAAGATTATTTGGATGGATTTACTATGTGTATTGTCATATTTAGTTTTGTGACTTCTTGTGATAAGATACAATATTTTGAACAATTGTACCTGTCTTCTTTTGTGGAGTTGAGATAGAGGTGGTGGTGTAAATGTACTGTTTGGGTTTTATATTACTCCCTCCGTTCCCTATTTAGAAAAAAGTGAAATATCATGGGAAATAGAGTATATTGGTAATTGGTTTGCATGGAAAGTGGAATATAGTACATGGGAAAGGAGACTATAATATATAGGAGTTGTATTATATAGTATAGGAGAAAGTGGAGAATTTAATGGCCAAAAATAGAAACAGAACTATAATTTTAGGACGTCCAATTAGGAAAACAGGACTATAATTGTGAGACGTAGGCAGTAGAACTTAGAAAGAAGTATATAATATGCGACATATGTGCGGTTCAAATATTTTTCTGTATGTATAATAGTGATGAACCTCACTATTCAGATTTCTTTTTGCATTGTCACAGGGAACAAACAACATTCTTGAACTTTTGGAGAAGATGAATCTTAAAGTTGCCGAAGAGTATAACAGTTATGGCGACGTTGCTTCTGGACTGAGGGTGTTCGTGGAGCAGTTAAAGCACAAGAGTGGTAGCTTTGAAGGGTACATTCAACAAATTGATGCAATAGATCAACAAGTAACAGAATTTGAAGCAGTAATTTCAATGCTTGATAAATACGTTTCTATGTTGGAAAAGAAAGTGCAATCTGCATATCAGGTTCCACCATTGTAGTTTTATCGACATCTTGTCTTCATTGATGTGTTTTAGAAAGTTTTGCCAAAAAAATATTATTTTGGTATCAATTTCATATTATAATTATAATTGTTTTGTGTGGGAGGCTGGTTTTGCATTTGACTCGTTTTTGTCGTTGGGAACTCTTATGCAATTCAGTGTGATGGAACGATTAACCATGCAAAATGTAGAGTGGATAATAATGTACCTTTTCATTGTCTCTCTGACTTTCTCACTAACAAGGTCTTGTTCATATTCTGCTTCCTTCTCTTTGCTTTTTTGGATAAGTCACTGATTTCATCATTCGGTGTTACTCTCGCTTTTCTCTTTTTCGATTTGTGTTGCAATTACAGTAACTTGAAACTAAGACTTCGCAAGTGGAGCAACTCCCCTGGTTGTCGACTTCGACGTCTAAGACTTCGCAAGCTTTAAATCCCCGACAACTCGACAAGGTGTGTCTTGTGTTAATTTGTTGTTAATATTCGGTTAATTTCAACTATATACTATTAATTGGTTGTTAGTTTTGCGATTAATTTCAACTATGTGCTCTTAATTTTGTATTTTATCTGTTAATTAATATTTTAATTTTACTATTGTATGTGTTATGTTTGCAACTTCTGCCTGTTGGGTTTGTGAAATGATTAGTGATGCTATGCGATTTGTTTGAATTATTCCTATCAAAAAAGGAACGTCTTTTAATATCTAAGCTCATATTCATGTTGACGCTTGATACAAGTTCAGATTTACTTGCGATAAGCGGCTTTTCTCCCTCCTCCAGCTTGCAACTAGCACTTTTTTGACCTCACTATCAATTCAACCTTTTTTCTGGGATACTGTTTTCTCTAATTTTTTCGAAGTAGGGAATTTTCTCCCTTTTAATTGTTGCACTAGGGCTGATTTTAATTGAATTGGCAAATTCATTTGGTGTTTTTGCTGTACTCCGTATGAATTTGTTAGGATCATATATATTGGTTTGAGTAGATTTCAAATAAAAGATCCAGGAAAGAAATCTGAGTAGTGTTGCCTATTTTAACTGCATTGTTGGGGGTAAAAAGTTGGCAAGAAAAGTTAATTCAATGTTGTAATTTGACATGCATTTTCCTTTCTTTGTTTAGTGCTCTTCCAAATCCATTGTTCGGCTGTCGTCCTCAACTAATGTCATTGAGCAGTAAGCTATTTATATTATACCTTTTCATGTCAACCAAAACTACTCTTGTTTTTATTCTTCTGTCTCGGCTTCTTAGACGCACAATATGTTGTTCTACTACGCTCGGTTTCATTTGATGTCACTTAAAATGCTATTTATCTTTGTAATTGTATGCCATAGTGAAATTCAGAAACATAGGCCACCTAGATACTTATTGTTAGCTTATTATGTTTACTAAGGAAGTAGGTCATCAATATTTTGAACTCATGGTTTACTATTAGAATTAGTCTATGGTCTATGAGTTCACTATCAATTTTGAGTTGATTTCTTGTGAAGGGTTGCGATTAAACATGTTTTGGTTAGTATTATGCTAGGGGAGTTGTGAAGTTGGGTTCAAACATGTATGTTGATTGATTGTGTTGTGGTTTTGTACTCTATTGATTAGAATTAGTCTGTGGGTTTATGTTCTGTTAATGATTGGTTGACCTTGTCTCAAGGGCCTGCTGTAGTTTAATGTGGATCTACACTATTTAGTATTTGAATGGTTTGATATGACTTTGAAATGAGGTTGAGTAGGGGTTTGTTAAATAATGGTTTTGAATGTTGGACCGTGTTTAATTTAACCAAGAATCTTTCACATGTGTTTTCCATTTAGGCAAGGATACAATGAACTTTTCTTCTGCTTGAGTGTTACAGGAGATTATTCCAGAAACACTGAAATAGAGTTGTTCTTAGTTTCAGAAATATATAACAAAGTAATAGTCTAATAGAGCTATAAAGTAACTTTTTTTTTTCTCTTGGAAAGTCGGGAGTAATAAAGTACTTTATAGTTTTGGAAATAGAAATTTCTACAACATAATTTTGTTTTGTTTTTCTATCTGATTCATCTCTACTCTATGGATCTACTGACAGTGCTCATGATAATACTGAGAAGAGCAACAAAGATCACGCACAAGGCATTGATAATCACTGTTCTATATGTGAAGTGGCATGTTTGTGCAATGATCGACTCTTTTGGATGTGAGGAAGACGATGTCGACAACACCAAGTTTCTCCCAGCTTACACCTACAGTACAATCTCCTTCCAGAAGCGACATGCTCTCAGTAAACTTATAAATGTTTCATTTACAGTAGATCTTTTTTCCAGTAGCTCCCTCTTTTTCCTCCAAATCTTTTCATAGAAAACAAAAGGCTATGTCATCTTAATATTACAACCACTATGATGAATTTATTTGTTGTCTGTACCCTTGGGTGAAGTGTCATTACTTTGCATCACCTCCTATAATTACATAGGTTTTGTTTTGTTTGGTAAAAGAATCCAACGTATGCTACATTTGCTATAACCATTTGATAACTTGCTTTTGAGTTTTGTCACTATGTATATTACAAAATTTTATGGCAACCCTCTCCATAGGTGTATGGTGTTTATTAGTTTAATTTGCATGAACTTGGAAGCTTGTTATTTATGTGTTTCATAGTCTACCTATCTGTTATGCTACCCTAATGACCTTAATATGCTACCAGTTTTTCAAAAAATGCGTCTGTTGCTATGATACCTCCTACTACCTCTTGCTCCTTTGCTAACTGGTTTAAGAAAAACAATACACCCAATCTTCAAATTTATGTGCTCAGTTTCCTATGTTTCAGTTGCTTGATTCCTTCAAATTTAGTGTGCTTATCGACTTAGATTTCTGATTTTCTCGTATCTTTTGCATTTTATGTCTGTTGGTTGTTCAGTTTGTTAATGGTTTGTACGTCTGTAGATGTACGATAGCCCAAATTATGTTCTCATTTTAATCTGATTTAGTTTAATTTCATCCTAATTGTAGATGGTCGTTCAATTTATTTTCTCATATCTTTTGATATTAGATTATCATAATGTATTGTTACTACAAGTTCTTGTTCTTTGGTCTTTTATATGTACATTTATAGTGGGGACACAATGTTTTGTATGTAAGATGGGTTTGGCAATCCGAGGCAATCATGAAAACTGAAAAATATCGAAGTAGGGGGATGAGAACTAGAAAGATTTAGATTTGCCAAAAAGGACACTTTATAACCAAAATTTTGTGAGAAATGACTTTTTATATATTTTTTTGAAGGCACGCCTTAATATACTCCGTAATTTTTTATTGCGAAAGACAAACAAATGGTAGTTTCCGGCATTGACTTAGTGTTTTTGACATTGACTTTTACATGATGTGCACGTGTGCCTTAAGGTTGCTAACCTCAACCCACTTCACTCCAAAATGCAGGTATATATAAGCCTATTGAAATCCTTAAAAAAATAACTTTCTCTGCAAAACTAATGAGGTTCTCCTGCCAGCGCCATCAGTGAAGCGTCATTACCAAGGAGGAATTGAACACCCAATCAACACAGTAAGTCATCAATGCTTCAAGTACATAAATTCATGATTTTTTTTCGTTTTTGGCCAAATTTTCTGACTTTTTTTTTTCATTTTACTTCTCTGCTCTTCTCTGTTGTACATCCATAGCTACTAATAAAGGAAAGAGAAGGACATCAACATCAAGGAAAAGGAAGAGGAAGGCGACACGGATAAACATTTACTTACGTTACAGAGTAGTACACAGACCAAGGTAAATTTGCCATTTTAAACCATGATTTGCGATTTTAATTAAAAAATTAG

mRNA sequence

CACGTGGACGGGTGAACCTAGTTGCAGTCTTGCATGTGCATAGCAGTATAACCCTTGAAAATGGACATGAAAACGACCGGTCCACTCAAATTGACAGCACTAAACCCACATTGTCAATGGGCCAAAACCCAAATTACTTTTTTTAATTCTTTTTATTAAAAACTAAAAAATCTTAACAGTTTTGCCAAAACTCCATCTACCCCCTTCTCAGTTCTCAATTTCTCCCTCGTCATCAAATCATTGTCTTCATCTTTCAAATTCATCCCTCTGATTTCAGTTTGTGCAATTTCAATCACAGAGCCTCAAAATTGTAAAAATGGCGGAAAATGAGGTAGGTAAGGAACAACAAGATCAACCTGACGAACTTGCAGATGCTCTTGATGATCTCTTTAATGGCGTTTCCACCATGATCAAGTCCGAGCTTCAGGGAACAAACAACATTCTTGAACTTTTGGAGAAGATGAATCTTAAAGTTGCCGAAGAGTATAACAGTTATGGCGACGTTGCTTCTGGACTGAGGGTGTTCGTGGAGCAGTTAAAGCACAAGAGTGGTAGCTTTGAAGGTAACTTGAAACTAAGACTTCGCAAGTGGAGCAACTCCCCTGGTTGTCGACTTCGACGTCTAAGACTTCGCAAGCTTTAAATCCCCGACAACTCGACAAGTGCTCTTCCAAATCCATTGTTCGGCTGTCGTCCTCAACTAATGTCATTGAGCATGCTCATGATAATACTGAGAAGAGCAACAAAGATCACGCACAAGGCATTGATAATCACTGTTCTATATGTGAAGTGGCATGTTTGTGCAATGATCGACTCTTTTGGATGTGAGGAAGACGATGTCGACAACACCAAGTTTCTCCCAGCTTACACCTACAGTACAATCTCCTTCCAGAAGCGACATGCTCTCAGTATATATAAGCCTATTGAAATCCTTAAAAAAATAACTTTCTCTGCAAAACTAATGAGGTTCTCCTGCCAGCGCCATCAGTGAAGCGTCATTACCAAGGAGGAATTGAACACCCAATCAACACACTACTAATAAAGGAAAGAGAAGGACATCAACATCAAGGAAAAGGAAGAGGAAGGCGACACGGATAAACATTTACTTACGTTACAGAGTAGTACACAGACCAAGGTAAATTTGCCATTTTAAACCATGATTTGCGATTTTAATTAAAAAATTAG

Coding sequence (CDS)

ATGGCGGAAAATGAGGTAGGTAAGGAACAACAAGATCAACCTGACGAACTTGCAGATGCTCTTGATGATCTCTTTAATGGCGTTTCCACCATGATCAAGTCCGAGCTTCAGGGAACAAACAACATTCTTGAACTTTTGGAGAAGATGAATCTTAAAGTTGCCGAAGAGTATAACAGTTATGGCGACGTTGCTTCTGGACTGAGGGTGTTCGTGGAGCAGTTAAAGCACAAGAGTGGTAGCTTTGAAGGTAACTTGAAACTAAGACTTCGCAAGTGGAGCAACTCCCCTGGTTGTCGACTTCGACGTCTAAGACTTCGCAAGCTTTAA

Protein sequence

MAENEVGKEQQDQPDELADALDDLFNGVSTMIKSELQGTNNILELLEKMNLKVAEEYNSYGDVASGLRVFVEQLKHKSGSFEGNLKLRLRKWSNSPGCRLRRLRLRKL

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo24359.1	Spo24359.1	mRNA

Homology

[Close]

BLAST of Spo24359.1 vs. NCBI nr
Match: gi|902226771|gb|KNA20472.1| (hypothetical protein SOVF_051830 [Spinacia oleracea])

HSP 1 Score: 162.9 bits (411), Expect = 3.100e-37
Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 1


		  
Query: 1  MAENEVGKEQQDQPDELADALDDLFNGVSTMIKSELQGTNNILELLEKMNLKVAEEYNSY 60
          MAENEVGKEQQDQPDELADALDDLFNGVSTMIKSELQGTNNILELLEKMNLKVAEEYNSY
Sbjct: 1  MAENEVGKEQQDQPDELADALDDLFNGVSTMIKSELQGTNNILELLEKMNLKVAEEYNSY 60

Query: 61 GDVASGLRVFVEQLKHKSGSFEGNLK 87
          GDVASGLRVFVEQLKHKSGSFEG ++
Sbjct: 61 GDVASGLRVFVEQLKHKSGSFEGYIQ 86

[Close]

BLAST of Spo24359.1 vs. NCBI nr
Match: gi|731316162|ref|XP_010694489.1| (PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 152.5 bits (384), Expect = 4.100e-34
Identity = 78/83 (93.98%), Postives = 80/83 (96.39%), Query Frame = 1


		  
Query: 1  MAENEVGKEQQDQPDELADALDDLFNGVSTMIKSELQGTNNILELLEKMNLKVAEEYNSY 60
          MAENEV KEQ DQPDELADALDDLFNGVSTMIKSELQG+NN+LELLEKMNLKVAEEY SY
Sbjct: 1  MAENEVIKEQNDQPDELADALDDLFNGVSTMIKSELQGSNNLLELLEKMNLKVAEEYTSY 60

Query: 61 GDVASGLRVFVEQLKHKSGSFEG 84
          GDVASGLRVFVEQLKHKSGSFEG
Sbjct: 61 GDVASGLRVFVEQLKHKSGSFEG 83

[Close]

BLAST of Spo24359.1 vs. NCBI nr
Match: gi|1012336020|gb|KYP47332.1| (hypothetical protein KK1_031015 [Cajanus cajan])

HSP 1 Score: 112.8 bits (281), Expect = 3.600e-22
Identity = 59/80 (73.75%), Postives = 70/80 (87.50%), Query Frame = 1


		  
Query: 3  ENEVGKEQQD-QPDELADALDDLFNGVSTMIKSELQGTNNILELLEKMNLKVAEEYNSYG 62
          +N+   E QD +PDELA++LDDLF+ +STMIKSELQGTNN LELLEKMN++VAEEY  +G
Sbjct: 2  DNKKKDEPQDRKPDELAESLDDLFSSISTMIKSELQGTNNHLELLEKMNVRVAEEYKGFG 61

Query: 63 DVASGLRVFVEQLKHKSGSF 82
          D+ASGLRVFVEQLK KSGSF
Sbjct: 62 DLASGLRVFVEQLKCKSGSF 81

[Close]

BLAST of Spo24359.1 vs. NCBI nr
Match: gi|965616277|dbj|BAU01427.1| (hypothetical protein VIGAN_11065800 [Vigna angularis var. angularis])

HSP 1 Score: 112.5 bits (280), Expect = 4.700e-22
Identity = 56/72 (77.78%), Postives = 65/72 (90.28%), Query Frame = 1


		  
Query: 10 QQDQPDELADALDDLFNGVSTMIKSELQGTNNILELLEKMNLKVAEEYNSYGDVASGLRV 69
          Q ++PDELA++LDDLF  +STMIKSELQGTNN LELLEKMN++VAEEY  +GD+ASGLRV
Sbjct: 10 QDEKPDELAESLDDLFCSISTMIKSELQGTNNHLELLEKMNVRVAEEYKGFGDLASGLRV 69

Query: 70 FVEQLKHKSGSF 82
          FVEQLK KSGSF
Sbjct: 70 FVEQLKCKSGSF 81

[Close]

BLAST of Spo24359.1 vs. NCBI nr
Match: gi|920716341|gb|KOM56429.1| (hypothetical protein LR48_Vigan10g232100 [Vigna angularis])

HSP 1 Score: 112.5 bits (280), Expect = 4.700e-22
Identity = 56/72 (77.78%), Postives = 65/72 (90.28%), Query Frame = 1


		  
Query: 10 QQDQPDELADALDDLFNGVSTMIKSELQGTNNILELLEKMNLKVAEEYNSYGDVASGLRV 69
          Q ++PDELA++LDDLF  +STMIKSELQGTNN LELLEKMN++VAEEY  +GD+ASGLRV
Sbjct: 7  QDEKPDELAESLDDLFCSISTMIKSELQGTNNHLELLEKMNVRVAEEYKGFGDLASGLRV 66

Query: 70 FVEQLKHKSGSF 82
          FVEQLK KSGSF
Sbjct: 67 FVEQLKCKSGSF 78

[Close]

BLAST of Spo24359.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RNN3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_051830 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.100e-37
Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 1


		  
Query: 1  MAENEVGKEQQDQPDELADALDDLFNGVSTMIKSELQGTNNILELLEKMNLKVAEEYNSY 60
          MAENEVGKEQQDQPDELADALDDLFNGVSTMIKSELQGTNNILELLEKMNLKVAEEYNSY
Sbjct: 1  MAENEVGKEQQDQPDELADALDDLFNGVSTMIKSELQGTNNILELLEKMNLKVAEEYNSY 60

Query: 61 GDVASGLRVFVEQLKHKSGSFEGNLK 87
          GDVASGLRVFVEQLKHKSGSFEG ++
Sbjct: 61 GDVASGLRVFVEQLKHKSGSFEGYIQ 86

[Close]

BLAST of Spo24359.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CYN4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g028500 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.900e-34
Identity = 78/83 (93.98%), Postives = 80/83 (96.39%), Query Frame = 1


		  
Query: 1  MAENEVGKEQQDQPDELADALDDLFNGVSTMIKSELQGTNNILELLEKMNLKVAEEYNSY 60
          MAENEV KEQ DQPDELADALDDLFNGVSTMIKSELQG+NN+LELLEKMNLKVAEEY SY
Sbjct: 1  MAENEVIKEQNDQPDELADALDDLFNGVSTMIKSELQGSNNLLELLEKMNLKVAEEYTSY 60

Query: 61 GDVASGLRVFVEQLKHKSGSFEG 84
          GDVASGLRVFVEQLKHKSGSFEG
Sbjct: 61 GDVASGLRVFVEQLKHKSGSFEG 83

[Close]

BLAST of Spo24359.1 vs. UniProtKB/TrEMBL
Match: A0A151RXP9_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_031015 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.500e-22
Identity = 59/80 (73.75%), Postives = 70/80 (87.50%), Query Frame = 1


		  
Query: 3  ENEVGKEQQD-QPDELADALDDLFNGVSTMIKSELQGTNNILELLEKMNLKVAEEYNSYG 62
          +N+   E QD +PDELA++LDDLF+ +STMIKSELQGTNN LELLEKMN++VAEEY  +G
Sbjct: 2  DNKKKDEPQDRKPDELAESLDDLFSSISTMIKSELQGTNNHLELLEKMNVRVAEEYKGFG 61

Query: 63 DVASGLRVFVEQLKHKSGSF 82
          D+ASGLRVFVEQLK KSGSF
Sbjct: 62 DLASGLRVFVEQLKCKSGSF 81

[Close]

BLAST of Spo24359.1 vs. UniProtKB/TrEMBL
Match: A0A0S3T8Z4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G065800 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.300e-22
Identity = 56/72 (77.78%), Postives = 65/72 (90.28%), Query Frame = 1


		  
Query: 10 QQDQPDELADALDDLFNGVSTMIKSELQGTNNILELLEKMNLKVAEEYNSYGDVASGLRV 69
          Q ++PDELA++LDDLF  +STMIKSELQGTNN LELLEKMN++VAEEY  +GD+ASGLRV
Sbjct: 10 QDEKPDELAESLDDLFCSISTMIKSELQGTNNHLELLEKMNVRVAEEYKGFGDLASGLRV 69

Query: 70 FVEQLKHKSGSF 82
          FVEQLK KSGSF
Sbjct: 70 FVEQLKCKSGSF 81

[Close]

BLAST of Spo24359.1 vs. UniProtKB/TrEMBL
Match: A0A0L9VNW0_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g232100 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.300e-22
Identity = 56/72 (77.78%), Postives = 65/72 (90.28%), Query Frame = 1


		  
Query: 10 QQDQPDELADALDDLFNGVSTMIKSELQGTNNILELLEKMNLKVAEEYNSYGDVASGLRV 69
          Q ++PDELA++LDDLF  +STMIKSELQGTNN LELLEKMN++VAEEY  +GD+ASGLRV
Sbjct: 7  QDEKPDELAESLDDLFCSISTMIKSELQGTNNHLELLEKMNVRVAEEYKGFGDLASGLRV 66

Query: 70 FVEQLKHKSGSF 82
          FVEQLK KSGSF
Sbjct: 67 FVEQLKCKSGSF 78

[Close]

BLAST of Spo24359.1 vs. ExPASy Swiss-Prot
Match: BL1S2_ARATH (Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Arabidopsis thaliana GN=BLOS2 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.900e-19
Identity = 46/71 (64.79%), Postives = 58/71 (81.69%), Query Frame = 1


		  
Query: 12 DQPDELADALDDLFNGVSTMIKSELQGTNNILELLEKMNLKVAEEYNSYGDVASGLRVFV 71
          D  D+LA++L +LF  VS+M+KSELQGTNN L+LLEKMNL+VA EY+  GDVA+GLRVF 
Sbjct: 3  DSRDDLAESLQNLFTSVSSMVKSELQGTNNHLDLLEKMNLRVASEYDDMGDVAAGLRVFA 62

Query: 72 EQLKHKSGSFE 83
          EQ+K KSG  +
Sbjct: 63 EQMKSKSGGLD 73

[Close]

BLAST of Spo24359.1 vs. TAIR (Arabidopsis)
Match: AT5G49550.1 (Putative homolog of mammalian BLOC-1 Subunit 2. Protein - protein interaction with BLOS1.)

HSP 1 Score: 95.1 bits (235), Expect = 2.800e-20
Identity = 46/71 (64.79%), Postives = 58/71 (81.69%), Query Frame = 1


		  
Query: 12 DQPDELADALDDLFNGVSTMIKSELQGTNNILELLEKMNLKVAEEYNSYGDVASGLRVFV 71
          D  D+LA++L +LF  VS+M+KSELQGTNN L+LLEKMNL+VA EY+  GDVA+GLRVF 
Sbjct: 3  DSRDDLAESLQNLFTSVSSMVKSELQGTNNHLDLLEKMNLRVASEYDDMGDVAAGLRVFA 62

Query: 72 EQLKHKSGSFE 83
          EQ+K KSG  +
Sbjct: 63 EQMKSKSGGLD 73

The following BLAST results are available for this feature:

BLAST of Spo24359.1 vs. NCBI nr
BLAST of Spo24359.1 vs. UniProtKB/TrEMBL
BLAST of Spo24359.1 vs. ExPASy Swiss-Prot
BLAST of Spo24359.1 vs. TAIR (Arabidopsis)

BLAST of Spo24359.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902226771\|gb\|KNA20472.1\|	3.1e-37	96.5	hypothetical protein SOVF_0518...	[more]
gi\|731316162\|ref\|XP_010694489.1\|	4.1e-34	93.9	PREDICTED: biogenesis of lysos...	[more]
gi\|1012336020\|gb\|KYP47332.1\|	3.6e-22	73.7	hypothetical protein KK1_03101...	[more]
gi\|965616277\|dbj\|BAU01427.1\|	4.7e-22	77.7	hypothetical protein VIGAN_110...	[more]
gi\|920716341\|gb\|KOM56429.1\|	4.7e-22	77.7	hypothetical protein LR48_Viga...	[more]

BLAST of Spo24359.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RNN3_SPIOL	2.1e-37	96.5	Uncharacterized protein OS=Spi...	[more]
A0A0J8CYN4_BETVU	2.9e-34	93.9	Uncharacterized protein OS=Bet...	[more]
A0A151RXP9_CAJCA	2.5e-22	73.7	Uncharacterized protein OS=Caj...	[more]
A0A0S3T8Z4_PHAAN	3.3e-22	77.7	Uncharacterized protein OS=Vig...	[more]
A0A0L9VNW0_PHAAN	3.3e-22	77.7	Uncharacterized protein OS=Pha...	[more]

BLAST of Spo24359.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
BL1S2_ARATH	4.9e-19	64.7	Biogenesis of lysosome-related...	[more]

BLAST of Spo24359.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT5G49550.1	2.8e-20	64.7	Putative homolog of mammalian ...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019269	Biogenesis of lysosome-related organelles complex-1, subunit 2	PFAM	PF10046	BLOC1_2	coord: 23..85 score: 1.2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010048	vernalization response
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0034645	cellular macromolecule biosynthetic process
biological_process	GO:0009987	cellular process
cellular_component	GO:0031083	BLOC-1 complex
cellular_component	GO:0005768	endosome
cellular_component	GO:0005794	Golgi apparatus

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo23614	0.68	Barchart \| Table
Spo03163	0.65	Barchart \| Table