Spo24376 (gene) | SpinachBase

Overview


Name	Spo24376
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Remorin, putative
Location	chr2 : 51230037 .. 51231248 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGCATTGGCACATGTTGAGCAGGAGAAGAGGTTGTCTTTTATCAAGGCTTGGGAAGAAAGTGAAGAAACTAAAGCAGTCAACAAGTAAGTCGATCATTTTACTCATCACATTACATTACATGCCGAAGTCTGATATCAAATCCCATTTACATCATTTCTTTGTACCGTTTAATTTCTATAGACTAAAGACAAACAATACGTGAGGCACCCCCTAACATGCTACCACTAACTTTTAGATCAAACCCCGCCCTAGTTTGTTGATGAGAATTATCAAATCTCGTTTACAACATTCAATTCTTTTGATAATGACGCGTTCCTATGTCAAAATAATTAAATAAAATAAAAATAATGACGCGTTCATGATTTATGTGTTACATATCTCTTGCTTGGTATTTATCTAAAATGTGGCTTTGTTGAGTCTATAAATCTATAATGGGAATAATACTACAATCATTAACCAGTGTCCATTTCTAATTAAGTTTTAATTACACAAAACTATTGGATTCATCATTATAATAGTGGCTAAAGGAATTTCTTAAAACTAAATGGTGATGTTTGATTATTCGTTGGTACTGGACAGGGCTGAGAAGCTGATGTCTGCTCTGAACGCATGGGAGAACAGAAAGAAAGCATCCATAGACGCTAAACTCAAGTATATCGAGGTACCTTATTTCGCTAATCATGACTTTTATGTAATACATTTTATGTAATTGCAGCATTAGCCACATTCAATTCATAAGCTCAAGGAATATCAATTGATTGAAACATAGCGGAAACTTGCAATTAGATAGCTTGTGTTTAATGAGTTAGATTTTGAATGAGCAGGAAGAGCTGGAAAAGAAGAAGGCTGAATATGCAGAAAAGATGAAGAACATGGTAGCTCTAGTCCACAAGCAAACAGAAGAGAAGAGAGCAATAGTTCAAGCAAAAAAAGGAGAAGATATCCTCATCATCAAGGACAAGGCTGCTAAATACCGAGCCACTGGATATACCCCAAAGAAGATCCTTGGTTGCATCTCATTTTAGATCTTCCTCAGCCAGAAATATATAGTTACTTCAAGATAATGCAGTTTCAAAGGTGTAGCACTAAGCTAGATTGCACAACTTAAGTTTGTTTTTACGGCGTAAACAAGTTGTGTGAGAGATCAGTGTAATAGTACTGGTGATTGATTGTTAAAATTTTGGTTACAGTTGGGTTCTGAGACTTGGG

mRNA sequence

GTTGCATTGGCACATGTTGAGCAGGAGAAGAGGTTGTCTTTTATCAAGGCTTGGGAAGAAAGTGAAGAAACTAAAGCAGTCAACAAGGCTGAGAAGCTGATGTCTGCTCTGAACGCATGGGAGAACAGAAAGAAAGCATCCATAGACGCTAAACTCAAGTATATCGAGGAAGAGCTGGAAAAGAAGAAGGCTGAATATGCAGAAAAGATGAAGAACATGGTAGCTCTAGTCCACAAGCAAACAGAAGAGAAGAGAGCAATAGTTCAAGCAAAAAAAGGAGAAGATATCCTCATCATCAAGGACAAGGCTGCTAAATACCGAGCCACTGGATATACCCCAAAGAAGATCCTTGGTTGCATCTCATTTTAGATCTTCCTCAGCCAGAAATATATAGTTACTTCAAGATAATGCAGTTTCAAAGGTGTAGCACTAAGCTAGATTGCACAACTTAAGTTTGTTTTTACGGCGTAAACAAGTTGTGTGAGAGATCAGTGTAATAGTACTGGTGATTGATTGTTAAAATTTTGGTTACAGTTGGGTTCTGAGACTTGGG

Coding sequence (CDS)

GTTGCATTGGCACATGTTGAGCAGGAGAAGAGGTTGTCTTTTATCAAGGCTTGGGAAGAAAGTGAAGAAACTAAAGCAGTCAACAAGGCTGAGAAGCTGATGTCTGCTCTGAACGCATGGGAGAACAGAAAGAAAGCATCCATAGACGCTAAACTCAAGTATATCGAGGAAGAGCTGGAAAAGAAGAAGGCTGAATATGCAGAAAAGATGAAGAACATGGTAGCTCTAGTCCACAAGCAAACAGAAGAGAAGAGAGCAATAGTTCAAGCAAAAAAAGGAGAAGATATCCTCATCATCAAGGACAAGGCTGCTAAATACCGAGCCACTGGATATACCCCAAAGAAGATCCTTGGTTGCATCTCATTTTAG

Protein sequence

VALAHVEQEKRLSFIKAWEESEETKAVNKAEKLMSALNAWENRKKASIDAKLKYIEEELEKKKAEYAEKMKNMVALVHKQTEEKRAIVQAKKGEDILIIKDKAAKYRATGYTPKKILGCISF

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo24376.1	Spo24376.1	mRNA

Homology

[Close]

BLAST of Spo24376.1 vs. NCBI nr
Match: gi|902171055|gb|KNA07946.1| (hypothetical protein SOVF_167180 [Spinacia oleracea])

HSP 1 Score: 227.6 bits (579), Expect = 1.100e-56
Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 1


		  
Query: 1   VALAHVEQEKRLSFIKAWEESEETKAVNKAEKLMSALNAWENRKKASIDAKLKYIEEELE 60
           VALAHVEQEKRLSFIKAWEESEETKAVNKAEKLMSALNAWENRKKASIDAKLKYIEEELE
Sbjct: 68  VALAHVEQEKRLSFIKAWEESEETKAVNKAEKLMSALNAWENRKKASIDAKLKYIEEELE 127

Query: 61  KKKAEYAEKMKNMVALVHKQTEEKRAIVQAKKGEDILIIKDKAAKYRATGYTPKKILGCI 120
           KKKAEYAEKMKNMVALVHKQTEEKRAIVQAKKGEDIL+IKDKAAKYRATGYTPKKILGCI
Sbjct: 128 KKKAEYAEKMKNMVALVHKQTEEKRAIVQAKKGEDILMIKDKAAKYRATGYTPKKILGCI 187

Query: 121 SF 123
           SF
Sbjct: 188 SF 189

[Close]

BLAST of Spo24376.1 vs. NCBI nr
Match: gi|731311978|ref|XP_010672021.1| (PREDICTED: uncharacterized protein At3g61260-like isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 199.1 bits (505), Expect = 4.400e-48
Identity = 102/122 (83.61%), Postives = 116/122 (95.08%), Query Frame = 1


		  
Query: 1   VALAHVEQEKRLSFIKAWEESEETKAVNKAEKLMSALNAWENRKKASIDAKLKYIEEELE 60
           +ALAHVEQEKRLSFIKAWEESE+TKA+NKAEK  SAL+AWEN KKAS++AKLK IEEELE
Sbjct: 53  IALAHVEQEKRLSFIKAWEESEQTKAINKAEKKFSALDAWENSKKASLEAKLKEIEEELE 112

Query: 61  KKKAEYAEKMKNMVALVHKQTEEKRAIVQAKKGEDILIIKDKAAKYRATGYTPKKILGCI 120
           KKKAEYAEK+KNMVA +HKQTEEKRA+VQAKKGE++L+I++KAAKYRATGY PKKILGCI
Sbjct: 113 KKKAEYAEKIKNMVAQIHKQTEEKRAMVQAKKGEEVLMIQEKAAKYRATGYAPKKILGCI 172

Query: 121 SF 123
           SF
Sbjct: 173 SF 174

[Close]

BLAST of Spo24376.1 vs. NCBI nr
Match: gi|731311976|ref|XP_010672012.1| (PREDICTED: remorin-like isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 199.1 bits (505), Expect = 4.400e-48
Identity = 102/122 (83.61%), Postives = 116/122 (95.08%), Query Frame = 1


		  
Query: 1   VALAHVEQEKRLSFIKAWEESEETKAVNKAEKLMSALNAWENRKKASIDAKLKYIEEELE 60
           +ALAHVEQEKRLSFIKAWEESE+TKA+NKAEK  SAL+AWEN KKAS++AKLK IEEELE
Sbjct: 69  IALAHVEQEKRLSFIKAWEESEQTKAINKAEKKFSALDAWENSKKASLEAKLKEIEEELE 128

Query: 61  KKKAEYAEKMKNMVALVHKQTEEKRAIVQAKKGEDILIIKDKAAKYRATGYTPKKILGCI 120
           KKKAEYAEK+KNMVA +HKQTEEKRA+VQAKKGE++L+I++KAAKYRATGY PKKILGCI
Sbjct: 129 KKKAEYAEKIKNMVAQIHKQTEEKRAMVQAKKGEEVLMIQEKAAKYRATGYAPKKILGCI 188

Query: 121 SF 123
           SF
Sbjct: 189 SF 190

[Close]

BLAST of Spo24376.1 vs. NCBI nr
Match: gi|641867413|gb|KDO86097.1| (hypothetical protein CISIN_1g028704mg [Citrus sinensis])

HSP 1 Score: 167.2 bits (422), Expect = 1.800e-38
Identity = 88/119 (73.95%), Postives = 106/119 (89.08%), Query Frame = 1


		  
Query: 1   VALAHVEQEKRLSFIKAWEESEETKAVNKAEKLMSALNAWENRKKASIDAKLKYIEEELE 60
           VALA VE+EKR SFIKAWEESE+TKA NKA+K +SA+ AWEN KKAS++AKLK IEE+LE
Sbjct: 48  VALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLE 107

Query: 61  KKKAEYAEKMKNMVALVHKQTEEKRAIVQAKKGEDILIIKDKAAKYRATGYTPKKILGC 120
           +KKAEYAEKMKN VALVHK+ EEKRA+V+A++GED+L  ++ AAKYRATG TPKK+LGC
Sbjct: 108 RKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGC 166

[Close]

BLAST of Spo24376.1 vs. NCBI nr
Match: gi|567905198|ref|XP_006445087.1| (hypothetical protein CICLE_v10022286mg [Citrus clementina])

HSP 1 Score: 167.2 bits (422), Expect = 1.800e-38
Identity = 88/119 (73.95%), Postives = 106/119 (89.08%), Query Frame = 1


		  
Query: 1   VALAHVEQEKRLSFIKAWEESEETKAVNKAEKLMSALNAWENRKKASIDAKLKYIEEELE 60
           VALA VE+EKR SFIKAWEESE+TKA NKA+K +SA+ AWEN KKAS++AKLK IEE+LE
Sbjct: 86  VALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLE 145

Query: 61  KKKAEYAEKMKNMVALVHKQTEEKRAIVQAKKGEDILIIKDKAAKYRATGYTPKKILGC 120
           +KKAEYAEKMKN VALVHK+ EEKRA+V+A++GED+L  ++ AAKYRATG TPKK+LGC
Sbjct: 146 RKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGC 204

[Close]

BLAST of Spo24376.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QMX7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_167180 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 8.000e-57
Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 1


		  
Query: 1   VALAHVEQEKRLSFIKAWEESEETKAVNKAEKLMSALNAWENRKKASIDAKLKYIEEELE 60
           VALAHVEQEKRLSFIKAWEESEETKAVNKAEKLMSALNAWENRKKASIDAKLKYIEEELE
Sbjct: 68  VALAHVEQEKRLSFIKAWEESEETKAVNKAEKLMSALNAWENRKKASIDAKLKYIEEELE 127

Query: 61  KKKAEYAEKMKNMVALVHKQTEEKRAIVQAKKGEDILIIKDKAAKYRATGYTPKKILGCI 120
           KKKAEYAEKMKNMVALVHKQTEEKRAIVQAKKGEDIL+IKDKAAKYRATGYTPKKILGCI
Sbjct: 128 KKKAEYAEKMKNMVALVHKQTEEKRAIVQAKKGEDILMIKDKAAKYRATGYTPKKILGCI 187

Query: 121 SF 123
           SF
Sbjct: 188 SF 189

[Close]

BLAST of Spo24376.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D392_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g005980 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.000e-48
Identity = 102/122 (83.61%), Postives = 116/122 (95.08%), Query Frame = 1


		  
Query: 1   VALAHVEQEKRLSFIKAWEESEETKAVNKAEKLMSALNAWENRKKASIDAKLKYIEEELE 60
           +ALAHVEQEKRLSFIKAWEESE+TKA+NKAEK  SAL+AWEN KKAS++AKLK IEEELE
Sbjct: 69  IALAHVEQEKRLSFIKAWEESEQTKAINKAEKKFSALDAWENSKKASLEAKLKEIEEELE 128

Query: 61  KKKAEYAEKMKNMVALVHKQTEEKRAIVQAKKGEDILIIKDKAAKYRATGYTPKKILGCI 120
           KKKAEYAEK+KNMVA +HKQTEEKRA+VQAKKGE++L+I++KAAKYRATGY PKKILGCI
Sbjct: 129 KKKAEYAEKIKNMVAQIHKQTEEKRAMVQAKKGEEVLMIQEKAAKYRATGYAPKKILGCI 188

Query: 121 SF 123
           SF
Sbjct: 189 SF 190

[Close]

BLAST of Spo24376.1 vs. UniProtKB/TrEMBL
Match: A0A067HE31_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028704mg PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.300e-38
Identity = 88/119 (73.95%), Postives = 106/119 (89.08%), Query Frame = 1


		  
Query: 1   VALAHVEQEKRLSFIKAWEESEETKAVNKAEKLMSALNAWENRKKASIDAKLKYIEEELE 60
           VALA VE+EKR SFIKAWEESE+TKA NKA+K +SA+ AWEN KKAS++AKLK IEE+LE
Sbjct: 86  VALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLE 145

Query: 61  KKKAEYAEKMKNMVALVHKQTEEKRAIVQAKKGEDILIIKDKAAKYRATGYTPKKILGC 120
           +KKAEYAEKMKN VALVHK+ EEKRA+V+A++GED+L  ++ AAKYRATG TPKK+LGC
Sbjct: 146 RKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGC 204

[Close]

BLAST of Spo24376.1 vs. UniProtKB/TrEMBL
Match: V4U817_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022286mg PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.300e-38
Identity = 88/119 (73.95%), Postives = 106/119 (89.08%), Query Frame = 1


		  
Query: 1   VALAHVEQEKRLSFIKAWEESEETKAVNKAEKLMSALNAWENRKKASIDAKLKYIEEELE 60
           VALA VE+EKR SFIKAWEESE+TKA NKA+K +SA+ AWEN KKAS++AKLK IEE+LE
Sbjct: 64  VALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLE 123

Query: 61  KKKAEYAEKMKNMVALVHKQTEEKRAIVQAKKGEDILIIKDKAAKYRATGYTPKKILGC 120
           +KKAEYAEKMKN VALVHK+ EEKRA+V+A++GED+L  ++ AAKYRATG TPKK+LGC
Sbjct: 124 RKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGC 182

[Close]

BLAST of Spo24376.1 vs. UniProtKB/TrEMBL
Match: V4TXM1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022286mg PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.300e-38
Identity = 88/119 (73.95%), Postives = 106/119 (89.08%), Query Frame = 1


		  
Query: 1   VALAHVEQEKRLSFIKAWEESEETKAVNKAEKLMSALNAWENRKKASIDAKLKYIEEELE 60
           VALA VE+EKR SFIKAWEESE+TKA NKA+K +SA+ AWEN KKAS++AKLK IEE+LE
Sbjct: 86  VALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLE 145

Query: 61  KKKAEYAEKMKNMVALVHKQTEEKRAIVQAKKGEDILIIKDKAAKYRATGYTPKKILGC 120
           +KKAEYAEKMKN VALVHK+ EEKRA+V+A++GED+L  ++ AAKYRATG TPKK+LGC
Sbjct: 146 RKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGC 204

[Close]

BLAST of Spo24376.1 vs. ExPASy Swiss-Prot
Match: REMO_SOLTU (Remorin OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.900e-35
Identity = 77/116 (66.38%), Postives = 99/116 (85.34%), Query Frame = 1


		  
Query: 3   LAHVEQEKRLSFIKAWEESEETKAVNKAEKLMSALNAWENRKKASIDAKLKYIEEELEKK 62
           LA V  EKR+S IKAWEESE++KA NKA+K +SA+ AWEN KKA+++A+LK +EE+LEKK
Sbjct: 81  LARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKK 140

Query: 63  KAEYAEKMKNMVALVHKQTEEKRAIVQAKKGEDILIIKDKAAKYRATGYTPKKILG 119
           KAEY EKMKN +AL+HK+ EEKRA+++AK+GED+L  ++ AAKYRATG  PKKILG
Sbjct: 141 KAEYTEKMKNKIALLHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGTAPKKILG 196

[Close]

BLAST of Spo24376.1 vs. ExPASy Swiss-Prot
Match: Y3126_ARATH (Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.200e-35
Identity = 74/119 (62.18%), Postives = 100/119 (84.03%), Query Frame = 1


		  
Query: 1   VALAHVEQEKRLSFIKAWEESEETKAVNKAEKLMSALNAWENRKKASIDAKLKYIEEELE 60
           V LA + +EKRLSF++AWEESE++KA NKAEK ++ ++AWEN KKA+++A+LK IEE+LE
Sbjct: 93  VKLADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLE 152

Query: 61  KKKAEYAEKMKNMVALVHKQTEEKRAIVQAKKGEDILIIKDKAAKYRATGYTPKKILGC 120
           KKKAEYAE+MKN VA +HK+ EE+RA+++AK+GED+L  ++ AAKYRATG  PK   GC
Sbjct: 153 KKKAEYAERMKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGC 211

[Close]

BLAST of Spo24376.1 vs. ExPASy Swiss-Prot
Match: REMO_ARATH (Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.000e-33
Identity = 73/119 (61.34%), Postives = 97/119 (81.51%), Query Frame = 1


		  
Query: 1   VALAHVEQEKRLSFIKAWEESEETKAVNKAEKLMSALNAWENRKKASIDAKLKYIEEELE 60
           V LA +E+EK+ SFIKAWEESE++KA N+A+K +S ++AWEN KKA+++A+L+ IEE+LE
Sbjct: 71  VILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIEEKLE 130

Query: 61  KKKAEYAEKMKNMVALVHKQTEEKRAIVQAKKGEDILIIKDKAAKYRATGYTPKKILGC 120
           KKKA+Y EKMKN VA +HK  EEKRA+V+AKKGE++L  ++  AKYRATG  PK   GC
Sbjct: 131 KKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVVPKATCGC 189

[Close]

BLAST of Spo24376.1 vs. TAIR (Arabidopsis)
Match: AT3G61260.1 (Remorin family protein)

HSP 1 Score: 148.7 bits (374), Expect = 2.400e-36
Identity = 74/119 (62.18%), Postives = 100/119 (84.03%), Query Frame = 1


		  
Query: 1   VALAHVEQEKRLSFIKAWEESEETKAVNKAEKLMSALNAWENRKKASIDAKLKYIEEELE 60
           V LA + +EKRLSF++AWEESE++KA NKAEK ++ ++AWEN KKA+++A+LK IEE+LE
Sbjct: 93  VKLADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLE 152

Query: 61  KKKAEYAEKMKNMVALVHKQTEEKRAIVQAKKGEDILIIKDKAAKYRATGYTPKKILGC 120
           KKKAEYAE+MKN VA +HK+ EE+RA+++AK+GED+L  ++ AAKYRATG  PK   GC
Sbjct: 153 KKKAEYAERMKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGC 211

[Close]

BLAST of Spo24376.1 vs. TAIR (Arabidopsis)
Match: AT5G23750.1 (Remorin family protein)

HSP 1 Score: 147.1 bits (370), Expect = 6.900e-36
Identity = 72/118 (61.02%), Postives = 98/118 (83.05%), Query Frame = 1


		  
Query: 3   LAHVEQEKRLSFIKAWEESEETKAVNKAEKLMSALNAWENRKKASIDAKLKYIEEELEKK 62
           LA VE EKR+S IKAWEE+E+ K  NKAEK +S++ +WEN KKA+++A+LK +EE+LEKK
Sbjct: 85  LARVETEKRMSLIKAWEEAEKCKVENKAEKKLSSIGSWENNKKAAVEAELKKMEEQLEKK 144

Query: 63  KAEYAEKMKNMVALVHKQTEEKRAIVQAKKGEDILIIKDKAAKYRATGYTPKKILGCI 121
           KAEY E+MKN +A +HK+ EEKRA+++AK+GE+IL  ++ AAKYRATG  PKK+ GC+
Sbjct: 145 KAEYVEQMKNKIAQIHKEAEEKRAMIEAKRGEEILKAEELAAKYRATGTAPKKLFGCM 202

[Close]

BLAST of Spo24376.1 vs. TAIR (Arabidopsis)
Match: AT2G45820.1 (Remorin family protein)

HSP 1 Score: 142.5 bits (358), Expect = 1.700e-34
Identity = 73/119 (61.34%), Postives = 97/119 (81.51%), Query Frame = 1


		  
Query: 1   VALAHVEQEKRLSFIKAWEESEETKAVNKAEKLMSALNAWENRKKASIDAKLKYIEEELE 60
           V LA +E+EK+ SFIKAWEESE++KA N+A+K +S ++AWEN KKA+++A+L+ IEE+LE
Sbjct: 71  VILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIEEKLE 130

Query: 61  KKKAEYAEKMKNMVALVHKQTEEKRAIVQAKKGEDILIIKDKAAKYRATGYTPKKILGC 120
           KKKA+Y EKMKN VA +HK  EEKRA+V+AKKGE++L  ++  AKYRATG  PK   GC
Sbjct: 131 KKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVVPKATCGC 189

[Close]

BLAST of Spo24376.1 vs. TAIR (Arabidopsis)
Match: AT3G48940.1 (Remorin family protein)

HSP 1 Score: 137.5 bits (345), Expect = 5.500e-33
Identity = 68/116 (58.62%), Postives = 93/116 (80.17%), Query Frame = 1


		  
Query: 3   LAHVEQEKRLSFIKAWEESEETKAVNKAEKLMSALNAWENRKKASIDAKLKYIEEELEKK 62
           L  +EQ+KR+S IKAWEE+E++K  NKA+K +S++ AWEN KKAS++A+LK IEE+L KK
Sbjct: 58  LVRLEQDKRISLIKAWEEAEKSKVENKAQKKISSVGAWENSKKASVEAELKKIEEQLNKK 117

Query: 63  KAEYAEKMKNMVALVHKQTEEKRAIVQAKKGEDILIIKDKAAKYRATGYTPKKILG 119
           KA Y E+MKN +A +HK+ EEKRA+ +AK+GED+L  ++ AAKYRATG  P K+ G
Sbjct: 118 KAHYTEQMKNKIAQIHKEAEEKRAMTEAKRGEDVLKAEEMAAKYRATGTAPTKLFG 173

[Close]

BLAST of Spo24376.1 vs. TAIR (Arabidopsis)
Match: AT4G00670.1 (Remorin family protein)

HSP 1 Score: 75.1 bits (183), Expect = 3.300e-14
Identity = 38/107 (35.51%), Postives = 71/107 (66.36%), Query Frame = 1


		  
Query: 9   EKRLSFIKAWEESEETKAVNKAEKLMSALNAWENRKKASIDAKLKYIEEELEKKKAEYAE 68
           +++   IKAW+E + TK  NK +K +  ++ WE +K   I+++L  I+ +++ KK E +E
Sbjct: 11  DEQSKVIKAWKELKITKVNNKTQKKLLDISGWEKKKTTKIESELARIQRKMDSKKMEKSE 70

Query: 69  KMKNMVALVHKQTEEKRAIVQAKKGEDILIIKDKAAKYRATGYTPKK 116
           K++N  A VH + ++K+A VQ ++ ++IL  ++ AA+++A G  PKK
Sbjct: 71  KLRNEKAAVHAKAQKKKADVQTRRAQEILDAEEAAARFQAAGKIPKK 117

The following BLAST results are available for this feature:

BLAST of Spo24376.1 vs. NCBI nr
BLAST of Spo24376.1 vs. UniProtKB/TrEMBL
BLAST of Spo24376.1 vs. ExPASy Swiss-Prot
BLAST of Spo24376.1 vs. TAIR (Arabidopsis)

BLAST of Spo24376.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902171055\|gb\|KNA07946.1\|	1.1e-56	99.1	hypothetical protein SOVF_1671...	[more]
gi\|731311978\|ref\|XP_010672021.1\|	4.4e-48	83.6	PREDICTED: uncharacterized pro...	[more]
gi\|731311976\|ref\|XP_010672012.1\|	4.4e-48	83.6	PREDICTED: remorin-like isofor...	[more]
gi\|641867413\|gb\|KDO86097.1\|	1.8e-38	73.9	hypothetical protein CISIN_1g0...	[more]
gi\|567905198\|ref\|XP_006445087.1\|	1.8e-38	73.9	hypothetical protein CICLE_v10...	[more]

BLAST of Spo24376.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QMX7_SPIOL	8.0e-57	99.1	Uncharacterized protein OS=Spi...	[more]
A0A0J8D392_BETVU	3.0e-48	83.6	Uncharacterized protein OS=Bet...	[more]
A0A067HE31_CITSI	1.3e-38	73.9	Uncharacterized protein OS=Cit...	[more]
V4U817_9ROSI	1.3e-38	73.9	Uncharacterized protein OS=Cit...	[more]
V4TXM1_9ROSI	1.3e-38	73.9	Uncharacterized protein OS=Cit...	[more]

BLAST of Spo24376.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 3


Match Name	E-value	Identity	Description
REMO_SOLTU	1.9e-35	66.3	Remorin OS=Solanum tuberosum P...	[more]
Y3126_ARATH	4.2e-35	62.1	Uncharacterized protein At3g61...	[more]
REMO_ARATH	3.0e-33	61.3	Remorin OS=Arabidopsis thalian...	[more]

BLAST of Spo24376.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT3G61260.1	2.4e-36	62.1	Remorin family protein	[more]
AT5G23750.1	6.9e-36	61.0	Remorin family protein	[more]
AT2G45820.1	1.7e-34	61.3	Remorin family protein	[more]
AT3G48940.1	5.5e-33	58.6	Remorin family protein	[more]
AT4G00670.1	3.3e-14	35.5	Remorin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005516	Remorin, C-terminal	PFAM	PF03763	Remorin_C	coord: 11..115 score: 5.8
None	No IPR available	unknown	Coil	Coil	coord: 45..76 scor
None	No IPR available	PANTHER	PTHR31775	FAMILY NOT NAMED	coord: 1..122 score: 1.0

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo01645	0.67	Barchart \| Table