Spo24539 (gene)

Overview
NameSpo24539
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr3 : 112644448 .. 112646720 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGACTTAGAAGTATGTCGATTAATGACTACTCCATCTTCTTGAACTACATCCGAGTCTTTACTAAATTGAACAAAAACAGAAATATAAATCGAAATTCTGGCAAATAAAAAAAAATCAAGATGTGAGTGCAATTATTAAGGTTTTTTTGGACGAATCATTCTAGAAATTAATTCTTACAGGTTTTTCTTGCTTTTAACCTTTATAAACTTTTAGAAAAGAATGTCTTACAGAAAAGACCGCCTTGTTGCGTCCAAGCTGTTATGCAGTACATAACGTCAGCATTTTAAAAATAAACGTGCTTCACATTTTTCATTTCTTCTTATTTTCAAAACCCTCATTTTTTCTCTCTCCTCAGAAACTTCCCTTCTCTCTCCTCTCTGCTCCAGCGGCGATGACGAAGAAGACGCCGGAGAAGACAACGGTGGTACTTCCTTGCCACCGTGGCCATCAACTACTCGCCCGACTCTCCTCCTTCCGTAGATCGAAGAGATGATGTCCATAGGTGAGAGTTTAGGTTGAGTTTGCTCGAATTTGATATGCTTCTCTCCCTTCTTTCTCTTAATTCACGGTAGTTGAATGATTCGTCATCTATTCACAGCAGTTGCGTCAGTATTCATCGCATAGATGACGAATCATTCAATTTCAAGGTTCCTTTTCGACTTTTTCCAGAAGTTTTAGAGAATGTTGCTGATTTTAAATTACTTTGAATTTTTCTTGTGAATACGTTGATTTTCTGCTGTTTTATGATGTATTTTACTTTGAATTAAAGGATAAGAAAGACGGAGATCTAAGTTTCAGCTTCGATCAAGTGCTATGAGGATTCTGCTCAAGCTAGTGTCTACGAAGTTTCTTTGCCGGTTGTTCAAGGTAAACATTAATCTTGTGAATTTTAAGTATGAATGAAGTTTAGGTTTAATTGATGGATGATTAAGAAGGAGAATTTCTTCCTAGGACAAGAACTTGTATATAATTGACAATCGGAAACAGAAAATGAACAACCAATTTCCGATTTAGGAGAAGGATAGTGTTGACTTGTGTAATGTGGTCATAAAAATGATGTTGAAATGTAAATTTACAGAGTCACAGAAATTTTGGTTATATTTTAGTTATGAAATGAAATTGGTCTTTCAGGTTGCTGGTGGTTGCGTCTTTCAGGTTGCTGGTGGCTCAATGCCTGGGCTGGTGCAATTGGTACAAGGTACAACCTGCCTGTGTTTTTGTTGTTGTTCGCGGAGGAGCAACGGTGCGGTAATCCCTGTTCATACCAAAACTTGCGGAATATATTTAATTTGTTTTACACTTTTAGTTACAATTAATATTGCTTTAGTTAATAATTATTTTGTTTTAGTTAAGAATAATTAACTTTTAGTGAAGAAATTTTCGACGATTCCACCCCCTAACTCTTCTTTAGCCCCGCTGGCGCAGCAGCTAAAGCAGGTTAGTGAAGACTAAACTTGTTTTAGCTAGTACTAATACTAAGAGACCTGAAGTCCGAACTAGGCTTTGTAGTCTTGTAGAGGTTCTTGCTTGCTTAAGGATGTGTTGCTACATTAATTTTCTGCAACTTTTGATGGAGACCTGGCTATTGATCTTGATGTGTTGGTTTGTGTTGACTATGTCGAGTGCTTTGTTGATGTTATAATTTGTGTTTTATTTTGGTTTGTGCTTTATAAATCAGTAAATATAGATGCATAACTTTATATTTATGTGCAACAGGATGTTTCTGGGAAATGGTAGAGTATTGAACAAAATTGACCTCCCAAGCAGAGGAGTCGAGGCACAGGCACAGGCACAGGGCCACATGGCAATTAGTGAAACTCCAACGTTTATCCCCGTTCCTCTACTCTGCTCTCGTCGTTGCTGCGTGTGGAGGGTTGGGGAATGCAGGTGGCGGAGCAGCAGAGGAGACGGTTGTGGAGTGGGATAGGGCGCTTGCTGTTGCTGGTTGGAGCATGCTGGCAAGGAAGATGGAGGATTGAGGTGGTACCTCTTGGTGTGGTGAAGGATAGGCTGGAAATGGGGTGTAGTTTAAGTCTCAAATGCTTGATGCGTGTTGTTTTGTGATGTACCGTTGTTGTAGACTTGTAGTTGTTCGTTTAATTAGTTTTAATTCAGAATAATTTTGTTTTAGTTGTTATTTATTTCGTTTTAGTTAATAATAATGTTTTTTTAGTTATGATTTATTTTGTTTAAGTTATAGTTAAGAATTTTTTTTTTAAGTTACACTTTTGTTATATTTAGTTATGAAATATAATGATTTAGTTAGAGCTG

mRNA sequence

CTGACTTAGAAGTATGTCGATTAATGACTACTCCATCTTCTTGAACTACATCCGAGTCTTTACTAAATTGAACAAAAACAGAAATATAAATCGAAATTCTGGCAAATAAAAAAAAATCAAGATGTGAGTGCAATTATTAAGGTTTTTTTGGACGAATCATTCTAGAAATTAATTCTTACAGAAACTTCCCTTCTCTCTCCTCTCTGCTCCAGCGGCGATGACGAAGAAGACGCCGGAGAAGACAACGGTGGTACTTCCTTGCCACCGTGGCCATCAACTACTCGCCCGACTCTCCTCCTTCCGTAGATCGAAGAGATGATGTCCATAGGATAAGAAAGACGGAGATCTAAGTTTCAGCTTCGATCAAGTGCTATGAGGATTCTGCTCAAGCTAGTGTCTACGAAGTTTCTTTGCCGGTTGTTCAAGGTTGCTGGTGGCTCAATGCCTGGGCTGGTGCAATTGGTACAAGGTACAACCTGCCTGTGTTTTTGTTGTTGTTCGCGGAGGAGCAACGGTGCGGTAATCCCTGTTCATACCAAAACTTGCGGAATATATTTAATTTGTTTTACACTTTTAGTTACAATTAATATTGCTTTAGTTAATAATTATTTTGTTTTAGTTAAGAATAATTAACTTTTAGTGAAGAAATTTTCGACGATTCCACCCCCTAACTCTTCTTTAGCCCCGCTGGCGCAGCAGCTAAAGCAGGTTAGTGAAGACTAAACTTGTTTTAGCTAGTACTAATACTAAGAGACCTGAAGTCCGAACTAGGCTTTGTAGTCTTGTAGAGGTTCTTGCTTGCTTAAGGATGTGTTGCTACATTAATTTTCTGCAACTTTTGATGGAGACCTGGCTATTGATCTTGATGTGTTGGTTTGTGTTGACTATGTCGAGTGCTTTGTTGATGTTATAATTTGTGTTTTATTTTGGTTTGTGCTTTATAAATCAGTAAATATAGATGCATAACTTTATATTTATGTGCAACAGGATGTTTCTGGGAAATGGTAGAGTATTGAACAAAATTGACCTCCCAAGCAGAGGAGTCGAGGCACAGGCACAGGCACAGGGCCACATGGCAATTAGTGAAACTCCAACGTTTATCCCCGTTCCTCTACTCTGCTCTCGTCGTTGCTGCGTGTGGAGGGTTGGGGAATGCAGGTGGCGGAGCAGCAGAGGAGACGGTTGTGGAGTGGGATAGGGCGCTTGCTGTTGCTGGTTGGAGCATGCTGGCAAGGAAGATGGAGGATTGAGGTGGTACCTCTTGGTGTGGTGAAGGATAGGCTGGAAATGGGGTGTAGTTTAAGTCTCAAATGCTTGATGCGTGTTGTTTTGTGATGTACCGTTGTTGTAGACTTGTAGTTGTTCGTTTAATTAGTTTTAATTCAGAATAATTTTGTTTTAGTTGTTATTTATTTCGTTTTAGTTAATAATAATGTTTTTTTAGTTATGATTTATTTTGTTTAAGTTATAGTTAAGAATTTTTTTTTTAAGTTACACTTTTGTTATATTTAGTTATGAAATATAATGATTTAGTTAGAGCTG

Coding sequence (CDS)

ATGAGGATTCTGCTCAAGCTAGTGTCTACGAAGTTTCTTTGCCGGTTGTTCAAGGTTGCTGGTGGCTCAATGCCTGGGCTGGTGCAATTGGTACAAGGTACAACCTGCCTGTGTTTTTGTTGTTGTTCGCGGAGGAGCAACGGTGCGGTAATCCCTGTTCATACCAAAACTTGCGGAATATATTTAATTTGTTTTACACTTTTAGTTACAATTAATATTGCTTTAGTTAATAATTATTTTGTTTTAGTTAAGAATAATTAA

Protein sequence

MRILLKLVSTKFLCRLFKVAGGSMPGLVQLVQGTTCLCFCCCSRRSNGAVIPVHTKTCGIYLICFTLLVTINIALVNNYFVLVKNN
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo24539.1Spo24539.1mRNA


Homology
BLAST of Spo24539.1 vs. NCBI nr
Match: gi|902238049|gb|KNA25021.1| (hypothetical protein SOVF_010190 isoform A [Spinacia oleracea])

HSP 1 Score: 64.3 bits (155), Expect = 1.200e-7
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 1

		  

Query: 1  MRILLKLVSTKFLCRLFKVAGGSMPGLVQLVQ 33
          MRILLKLVSTKFLCRLFKVAGGSMPGLVQLVQ
Sbjct: 1  MRILLKLVSTKFLCRLFKVAGGSMPGLVQLVQ 32

BLAST of Spo24539.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RZU7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_010190 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.200e-8
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 1

		  

Query: 1  MRILLKLVSTKFLCRLFKVAGGSMPGLVQLVQ 33
          MRILLKLVSTKFLCRLFKVAGGSMPGLVQLVQ
Sbjct: 1  MRILLKLVSTKFLCRLFKVAGGSMPGLVQLVQ 32

The following BLAST results are available for this feature:
BLAST of Spo24539.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902238049|gb|KNA25021.1|1.2e-7100.hypothetical protein SOVF_0101... [more]
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BLAST of Spo24539.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RZU7_SPIOL8.2e-8100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo24539.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo24539.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043547 positive regulation of GTPase activity
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009698 phenylpropanoid metabolic process
biological_process GO:0009737 response to abscisic acid
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0009395 phospholipid catabolic process
cellular_component GO:0005829 cytosol
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004620 phospholipase activity
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0020037 heme binding
molecular_function GO:0003958 NADPH-hemoprotein reductase activity
molecular_function GO:0008374 O-acyltransferase activity
molecular_function GO:0005096 GTPase activator activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0010181 FMN binding
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
RNA-Seq Expression
   



Co-expression