Spo24547 (gene) | SpinachBase

Overview


Name	Spo24547
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr3 : 112685340 .. 112686689 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTCACATTTGGATTGTCTGAATAAAGAAGAAAGATGGATGTCCAAATGTAAGGCTATTAGTCGTAGTAGATTGCCTGAGCTACCAAATGAAATTTGGATTGAGATTATGTTGAAACTGCCCATTAAGCCTCTTCATATATGCAAATGTGTATCCAAGACATGGCACTATCATGTCTTGCACATTTCCGAGACCCAGAAGGGATTAGAGCTTCCAACTTGTGTCATTTTATTCGAAATTATGCGTCTTGATGTAAAACGAGAGTTCGATTTGTGTTATTTATCCCTTGGTGACTACAAGATTACAAAATGGTCAATGGATGATCAAACCGAAAACGCTACCCTAGAGATGACTGACCATCAAAATACCCATGAAGATTATCATGATGGTAATGTAAGTGGATTGTTGCTGGGAAACTTAACCATAAAATTTGGCGGCTGGATCTCAAATGCCAAAAAGTACGAGTTATGGAACATGCACCGTGGCTTGATGCTTAGCGTCCTCGATACTCATACTTATCTTGTATACAACCCTGCCACCAATGAGGTTTTTGTCCTACCTAAGTCTCCTTCTCAACTTTCCAGAATTCGACCCACTGAGCTAGCAGCCATCGTTAATTTTTCAGATTGTCTTTTCTCTACTGAATGTAATTTCAGGGTCATTAGTTTTTCCAAGGACACAAGAACAGAGAAAAGCATGGTATTGGTTGAGATTTATTCTTGTAACAAGAACGAATGGTTTGTGTCAGAGTTCCCCCTTGAAAAGGCAGTCTATTTAGAAAAATGGAATGTGTCTGGTGCTGTGTTTCTGGATAGCACCTTATTTTTCATGACGAACAAGAGACATGTTGTGGCAGTTCAATTCCATACAAGGGACCAAGTAAGCCTTTACTCTATGCGCCTGCCTTCTTGTATTGCAAAGGGCTTTATTGAATCACAGTTGCATGTCTCTCAAGGATGTCTTTATCTTGCCTACCATAAGTTTCTCAACCTATGGATTTGGAAACACAATGGAAGATCAACAGATTCTGATGCTTGGATCCCGCAGTTTATATTCAAGAAATCGGGTACTTGTTTATGCCAACCAGTTGTTGAGAAAAATTTTCGTCAAGTTGTGAGAGAACAAACTTCTCCAAGGATCATAATCATCCATCCTGAGGCACCGATTGTTTTCATTAACGTGCATTCATCCATCCTGAGGCACCGATTGTTTTCATTAACGTGCATTCATCCATCTATGCATTCCATCTTTTTAATGGTACTGTTGAGAAGATTGCTGAGATTTCTAAGGAAGAACTTCCTTCGTTTGGTACTGCCTGCATATATTCTCCATGCGTTGCCTCATTGA

mRNA sequence

ATGTTTTCACATTTGGATTGTCTGAATAAAGAAGAAAGATGGATGTCCAAATGTAAGGCTATTAGTCGTAGTAGATTGCCTGAGCTACCAAATGAAATTTGGATTGAGATTATGTTGAAACTGCCCATTAAGCCTCTTCATATATGCAAATGTGTATCCAAGACATGGCACTATCATGTCTTGCACATTTCCGAGACCCAGAAGGGATTAGAGCTTCCAACTTGTGTCATTTTATTCGAAATTATGCGTCTTGATGTAAAACGAGAGTTCGATTTGTGTTATTTATCCCTTGGTGACTACAAGATTACAAAATGGTCAATGGATGATCAAACCGAAAACGCTACCCTAGAGATGACTGACCATCAAAATACCCATGAAGATTATCATGATGGTAATGTAAGTGGATTGTTGCTGGGAAACTTAACCATAAAATTTGGCGGCTGGATCTCAAATGCCAAAAAGTACGAGTTATGGAACATGCACCGTGGCTTGATGCTTAGCGTCCTCGATACTCATACTTATCTTGTATACAACCCTGCCACCAATGAGGTTTTTGTCCTACCTAAGTCTCCTTCTCAACTTTCCAGAATTCGACCCACTGAGCTAGCAGCCATCGTTAATTTTTCAGATTGTCTTTTCTCTACTGAATGTAATTTCAGGGTCATTAGTTTTTCCAAGGACACAAGAACAGAGAAAAGCATGGTATTGGTTGAGATTTATTCTTGTAACAAGAACGAATGGTTTGTGTCAGAGTTCCCCCTTGAAAAGGCAGTCTATTTAGAAAAATGGAATGTGTCTGGTGCTGTGTTTCTGGATAGCACCTTATTTTTCATGACGAACAAGAGACATGTTGTGGCAGTTCAATTCCATACAAGGGACCAAGTAAGCCTTTACTCTATGCGCCTGCCTTCTTGTATTGCAAAGGGCTTTATTGAATCACAGTTGCATGTCTCTCAAGGATGTCTTTATCTTGCCTACCATAAGTTTCTCAACCTATGGATTTGGAAACACAATGGAAGATCAACAGATTCTGATGCTTGGATCCCGCAGTTTATATTCAAGAAATCGGGTACTTGTTTATGCCAACCAGTTGTTGAGAAAAATTTTCGTCAAGTTGTGAGAGAACAAACTTCTCCAAGGATCATAATCATCCATCCTGAGGCACCGATTGTTTTCATTAACGTGCATTCATCCATCCTGAGGCACCGATTGTTTTCATTAACGTGCATTCATCCATCTATGCATTCCATCTTTTTAATGGTACTGTTGAGAAGATTGCTGAGATTTCTAAGGAAGAACTTCCTTCGTTTGGTACTGCCTGCATATATTCTCCATGCGTTGCCTCATTGA

Coding sequence (CDS)

ATGTTTTCACATTTGGATTGTCTGAATAAAGAAGAAAGATGGATGTCCAAATGTAAGGCTATTAGTCGTAGTAGATTGCCTGAGCTACCAAATGAAATTTGGATTGAGATTATGTTGAAACTGCCCATTAAGCCTCTTCATATATGCAAATGTGTATCCAAGACATGGCACTATCATGTCTTGCACATTTCCGAGACCCAGAAGGGATTAGAGCTTCCAACTTGTGTCATTTTATTCGAAATTATGCGTCTTGATGTAAAACGAGAGTTCGATTTGTGTTATTTATCCCTTGGTGACTACAAGATTACAAAATGGTCAATGGATGATCAAACCGAAAACGCTACCCTAGAGATGACTGACCATCAAAATACCCATGAAGATTATCATGATGGTAATGTAAGTGGATTGTTGCTGGGAAACTTAACCATAAAATTTGGCGGCTGGATCTCAAATGCCAAAAAGTACGAGTTATGGAACATGCACCGTGGCTTGATGCTTAGCGTCCTCGATACTCATACTTATCTTGTATACAACCCTGCCACCAATGAGGTTTTTGTCCTACCTAAGTCTCCTTCTCAACTTTCCAGAATTCGACCCACTGAGCTAGCAGCCATCGTTAATTTTTCAGATTGTCTTTTCTCTACTGAATGTAATTTCAGGGTCATTAGTTTTTCCAAGGACACAAGAACAGAGAAAAGCATGGTATTGGTTGAGATTTATTCTTGTAACAAGAACGAATGGTTTGTGTCAGAGTTCCCCCTTGAAAAGGCAGTCTATTTAGAAAAATGGAATGTGTCTGGTGCTGTGTTTCTGGATAGCACCTTATTTTTCATGACGAACAAGAGACATGTTGTGGCAGTTCAATTCCATACAAGGGACCAAGTAAGCCTTTACTCTATGCGCCTGCCTTCTTGTATTGCAAAGGGCTTTATTGAATCACAGTTGCATGTCTCTCAAGGATGTCTTTATCTTGCCTACCATAAGTTTCTCAACCTATGGATTTGGAAACACAATGGAAGATCAACAGATTCTGATGCTTGGATCCCGCAGTTTATATTCAAGAAATCGGGTACTTGTTTATGCCAACCAGTTGTTGAGAAAAATTTTCGTCAAGTTGTGAGAGAACAAACTTCTCCAAGGATCATAATCATCCATCCTGAGGCACCGATTGTTTTCATTAACGTGCATTCATCCATCCTGAGGCACCGATTGTTTTCATTAACGTGCATTCATCCATCTATGCATTCCATCTTTTTAATGGTACTGTTGAGAAGATTGCTGAGATTTCTAAGGAAGAACTTCCTTCGTTTGGTACTGCCTGCATATATTCTCCATGCGTTGCCTCATTGA

Protein sequence

MFSHLDCLNKEERWMSKCKAISRSRLPELPNEIWIEIMLKLPIKPLHICKCVSKTWHYHVLHISETQKGLELPTCVILFEIMRLDVKREFDLCYLSLGDYKITKWSMDDQTENATLEMTDHQNTHEDYHDGNVSGLLLGNLTIKFGGWISNAKKYELWNMHRGLMLSVLDTHTYLVYNPATNEVFVLPKSPSQLSRIRPTELAAIVNFSDCLFSTECNFRVISFSKDTRTEKSMVLVEIYSCNKNEWFVSEFPLEKAVYLEKWNVSGAVFLDSTLFFMTNKRHVVAVQFHTRDQVSLYSMRLPSCIAKGFIESQLHVSQGCLYLAYHKFLNLWIWKHNGRSTDSDAWIPQFIFKKSGTCLCQPVVEKNFRQVVREQTSPRIIIIHPEAPIVFINVHSSILRHRLFSLTCIHPSMHSIFLMVLLRRLLRFLRKNFLRLVLPAYILHALPH

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo24547.1	Spo24547.1	mRNA

Homology

[Close]

BLAST of Spo24547.1 vs. NCBI nr
Match: gi|731378282|ref|XP_010668124.1| (PREDICTED: uncharacterized protein LOC104885112 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 686.4 bits (1770), Expect = 3.300e-194
Identity = 331/414 (79.95%), Postives = 363/414 (87.68%), Query Frame = 1


		  
Query: 5   LDCLNKEERWMSKCKAISRSRLPELPNEIWIEIMLKLPIKPLHICKCVSKTWHYHVLHIS 64
           +DCLNK+ERWMSKCKAISRS+LPELP+EIWI+IMLKLPIKPLHICKCVSKTWH HVLHI 
Sbjct: 1   MDCLNKQERWMSKCKAISRSKLPELPDEIWIQIMLKLPIKPLHICKCVSKTWHSHVLHIF 60

Query: 65  ETQKGLELPTCVILFEIMRL----------DVKREFDLCYLSLGDYKITKWSMDDQTENA 124
           +TQKGLELP C ILF IMR+          DVK+EF+L YLSLGDYKITKWS DDQT +A
Sbjct: 61  DTQKGLELPPCGILFHIMRVPGGFGYDNENDVKQEFELGYLSLGDYKITKWSKDDQTGSA 120

Query: 125 TLEMTDHQNTHEDYHDGNVSGLLLGNLTIKFGGWISNAKKYELWNMHRGLMLSVLDTHTY 184
           TLEMTDHQNTH DYH+GN SGLLLGNLTIKFGGWISNAKKY LWNMHRGLMLS++D+HTY
Sbjct: 121 TLEMTDHQNTHGDYHNGNTSGLLLGNLTIKFGGWISNAKKYRLWNMHRGLMLSIVDSHTY 180

Query: 185 LVYNPATNEVFVLPKSPSQLSRIRPTELAAIVNFSDCLFSTECNFRVISFSKDTRTEKSM 244
            VYNPATNEVFVLPKSPSQLSR +PTELA I+NFSDCLFSTECNF VISFSKDTRT KSM
Sbjct: 181 HVYNPATNEVFVLPKSPSQLSRYQPTELATIINFSDCLFSTECNFSVISFSKDTRTVKSM 240

Query: 245 VLVEIYSCNKNEWFVSEFPLEKAVYLEKWNVSGAVFLDSTLFFMTNKRHVVAVQFHTRDQ 304
           VLVEIYS NK++W  SEFPLEK VYLE+WNVSGAVFLDSTL+FMTNKRHVVAVQFH+RD+
Sbjct: 241 VLVEIYSSNKHQWSASEFPLEKEVYLERWNVSGAVFLDSTLYFMTNKRHVVAVQFHSRDE 300

Query: 305 VSLYSMRLPSCIAKGFIESQLHVSQGCLYLAYHKFLNLWIWKHNGRSTDSDAWIPQFIFK 364
           VSLYS+RLPSCI +GF+ESQL VSQGCLYL+  KF NLWIWKH+GRSTDSD WIPQ IFK
Sbjct: 301 VSLYSIRLPSCIKRGFVESQLDVSQGCLYLSNRKFPNLWIWKHDGRSTDSDPWIPQLIFK 360

Query: 365 KSGTCLCQPVVEKNFRQVVREQTSPRIIIIHPEAPIVFINVHSSILRHRLFSLT 409
           KSGT +CQP+VEK FRQV RE  SP IIIIHPE P+VFI+V SSI    L + T
Sbjct: 361 KSGTSVCQPLVEKFFRQVAREHISPYIIIIHPEEPVVFIDVESSIFAFHLVNGT 414

[Close]

BLAST of Spo24547.1 vs. NCBI nr
Match: gi|902213118|gb|KNA17183.1| (hypothetical protein SOVF_082410 [Spinacia oleracea])

HSP 1 Score: 643.3 bits (1658), Expect = 3.200e-181
Identity = 312/351 (88.89%), Postives = 330/351 (94.02%), Query Frame = 1


		  
Query: 63  ISETQKGLELPTCVILFEIMRLD-----VKREFDLCYLSLGDYKITKWSMDDQTENATLE 122
           ++  +KGLELPTC ILFEI+ LD     VK E+DLCYLSLGDYKITKWS+DDQTENATLE
Sbjct: 11  LAHFRKGLELPTCGILFEIVHLDHNANDVKGEYDLCYLSLGDYKITKWSIDDQTENATLE 70

Query: 123 MTDHQNTHEDYHDGNVSGLLLGNLTIKFGGWISNAKKYELWNMHRGLMLSVLDTHTYLVY 182
           MTDHQNTHEDYHDGNVSGLLLGNLTIKFGGWISNAKKY++WNMHRGLMLS+LD+HTY VY
Sbjct: 71  MTDHQNTHEDYHDGNVSGLLLGNLTIKFGGWISNAKKYKIWNMHRGLMLSILDSHTYHVY 130

Query: 183 NPATNEVFVLPKSPSQLSRIRPTELAAIVNFSDCLFSTECNFRVISFSKDTRTEKSMVLV 242
           NPATNEVFVLPKSPSQLSRIRPTELAAIVNFSDCLFSTECNFRVISFSKDTRTEKSMVLV
Sbjct: 131 NPATNEVFVLPKSPSQLSRIRPTELAAIVNFSDCLFSTECNFRVISFSKDTRTEKSMVLV 190

Query: 243 EIYSCNKNEWFVSEFPLEKAVYLEKWNVSGAVFLDSTLFFMTNKRHVVAVQFHTRDQVSL 302
           EIYSCNK+EWFVSEFPLEKAVYLEKWNVSGAVFLD+TLFFMTNKRHVVAVQFHTRD+VSL
Sbjct: 191 EIYSCNKHEWFVSEFPLEKAVYLEKWNVSGAVFLDNTLFFMTNKRHVVAVQFHTRDEVSL 250

Query: 303 YSMRLPSCIAKGFIESQLHVSQGCLYLAYHKFLNLWIWKHNGRSTDSDAWIPQFIFKKSG 362
           YSMRLPSCIAKGF+ES+L+VSQGCLYL Y K  NLWIWKHNGRSTDSDAWIPQFIFKKSG
Sbjct: 251 YSMRLPSCIAKGFLESKLYVSQGCLYLTYRKSRNLWIWKHNGRSTDSDAWIPQFIFKKSG 310

Query: 363 TCLCQPVVEKNFRQVVREQTSPRIIIIHPEAPIVFINVHSSILRHRLFSLT 409
           TCLCQPVVEK FRQVVRE+TSPRIIIIHPEAPIVFINVHSSI    LF+ T
Sbjct: 311 TCLCQPVVEKFFRQVVREETSPRIIIIHPEAPIVFINVHSSIYAFHLFNGT 361

[Close]

BLAST of Spo24547.1 vs. NCBI nr
Match: gi|870749829|gb|KMS64601.1| (hypothetical protein BVRB_018610, partial [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 311.2 bits (796), Expect = 2.900e-81
Identity = 147/180 (81.67%), Postives = 159/180 (88.33%), Query Frame = 1


		  
Query: 5   LDCLNKEERWMSKCKAISRSRLPELPNEIWIEIMLKLPIKPLHICKCVSKTWHYHVLHIS 64
           +DCLNK+ERWMSKCKAISRS+LPELP+EIWI+IMLKLPIK LHICKCVSKTWH HVLHI 
Sbjct: 1   MDCLNKQERWMSKCKAISRSKLPELPDEIWIQIMLKLPIKSLHICKCVSKTWHSHVLHIF 60

Query: 65  ETQKGLELPTCVILFEIMRL----------DVKREFDLCYLSLGDYKITKWSMDDQTENA 124
           +TQKGLELP C ILFEI+R           DVKREFDL YLSLGDYKITKWS DDQTE+A
Sbjct: 61  DTQKGLELPPCGILFEILRTPGDFGYDNENDVKREFDLGYLSLGDYKITKWSNDDQTESA 120

Query: 125 TLEMTDHQNTHEDYHDGNVSGLLLGNLTIKFGGWISNAKKYELWNMHRGLMLSVLDTHTY 175
           TLEMTDHQNTH DYH+GN SGLLLGNLTIKFGGWISNAKKY LWNMHRGLMLS++D+HTY
Sbjct: 121 TLEMTDHQNTHGDYHNGNASGLLLGNLTIKFGGWISNAKKYRLWNMHRGLMLSIVDSHTY 180

[Close]

BLAST of Spo24547.1 vs. NCBI nr
Match: gi|731381720|ref|XP_010669057.1| (PREDICTED: uncharacterized protein LOC104886294 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 280.0 bits (715), Expect = 7.100e-72
Identity = 138/190 (72.63%), Postives = 155/190 (81.58%), Query Frame = 1


		  
Query: 234 MVLVEIYSCNKNEWFVSEFPLEKAVYLEKWNVSGAVFLDSTLFFMTNKRHVVAVQFHTRD 293
           MVLVEIYS NK++W  SEFPLEK VYLE+WNVSGAVFLDSTL+FMTNKRHVVAVQFH+RD
Sbjct: 1   MVLVEIYSSNKHQWSASEFPLEKEVYLERWNVSGAVFLDSTLYFMTNKRHVVAVQFHSRD 60

Query: 294 QVSLYSMRLPSCIAKGFIESQLHVSQGCLYLAYHKFLNLWIWKHNGRSTDSDAWIPQFIF 353
           +VSLYS+RLPSCI +GF+ESQL VSQGCLYL+  KF NLWIWKH+GRSTDSD WIPQ IF
Sbjct: 61  EVSLYSIRLPSCIKRGFVESQLDVSQGCLYLSNRKFPNLWIWKHDGRSTDSDPWIPQLIF 120

Query: 354 KKSGTCLCQPVVEKNFRQVVREQTSPRIIIIHPEAPIVFINVHSSILRHRLFSLT---CI 413
           KKSGT +CQP+VEK FRQV RE  SP IIII PE P+VFI+V SSI    LF+ T     
Sbjct: 121 KKSGTSVCQPLVEKFFRQVAREHISPYIIIIRPEEPVVFIDVESSIFAFHLFNGTVEKIA 180

Query: 414 HPSMHSIFLM 421
            PS   I L+
Sbjct: 181 EPSKEDILLV 190

[Close]

BLAST of Spo24547.1 vs. NCBI nr
Match: gi|870750896|gb|KMS64657.1| (hypothetical protein BVRB_018030, partial [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 249.2 bits (635), Expect = 1.400e-62
Identity = 120/148 (81.08%), Postives = 128/148 (86.49%), Query Frame = 1


		  
Query: 1   MFSHLDCLNKEERWMSKCKAISRSRLPELPNEIWIEIMLKLPIKPLHICKCVSKTWHYHV 60
           MFSH+DCLNK+ERWMSKCKAISRS+LPELP+EIWI+IMLKLPIK LHICKCVSKTWH HV
Sbjct: 1   MFSHMDCLNKQERWMSKCKAISRSKLPELPDEIWIQIMLKLPIKSLHICKCVSKTWHSHV 60

Query: 61  LHISETQKGLELPTCVILFEIMRL----------DVKREFDLCYLSLGDYKITKWSMDDQ 120
           LHI +TQKGLELP C ILFEIMR           DVKREFDL YLSLGDYKITKWS DDQ
Sbjct: 61  LHIFDTQKGLELPPCGILFEIMRTPGDFGYDNENDVKREFDLGYLSLGDYKITKWSKDDQ 120

Query: 121 TENATLEMTDHQNTHEDYHDGNVSGLLL 139
           TE+ATLEMTDHQNTH DYH+GN SGLLL
Sbjct: 121 TESATLEMTDHQNTHGDYHNGNASGLLL 148

[Close]

BLAST of Spo24547.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B1I7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_014410 PE=4 SV=1)

HSP 1 Score: 686.4 bits (1770), Expect = 2.300e-194
Identity = 331/414 (79.95%), Postives = 363/414 (87.68%), Query Frame = 1


		  
Query: 5   LDCLNKEERWMSKCKAISRSRLPELPNEIWIEIMLKLPIKPLHICKCVSKTWHYHVLHIS 64
           +DCLNK+ERWMSKCKAISRS+LPELP+EIWI+IMLKLPIKPLHICKCVSKTWH HVLHI 
Sbjct: 1   MDCLNKQERWMSKCKAISRSKLPELPDEIWIQIMLKLPIKPLHICKCVSKTWHSHVLHIF 60

Query: 65  ETQKGLELPTCVILFEIMRL----------DVKREFDLCYLSLGDYKITKWSMDDQTENA 124
           +TQKGLELP C ILF IMR+          DVK+EF+L YLSLGDYKITKWS DDQT +A
Sbjct: 61  DTQKGLELPPCGILFHIMRVPGGFGYDNENDVKQEFELGYLSLGDYKITKWSKDDQTGSA 120

Query: 125 TLEMTDHQNTHEDYHDGNVSGLLLGNLTIKFGGWISNAKKYELWNMHRGLMLSVLDTHTY 184
           TLEMTDHQNTH DYH+GN SGLLLGNLTIKFGGWISNAKKY LWNMHRGLMLS++D+HTY
Sbjct: 121 TLEMTDHQNTHGDYHNGNTSGLLLGNLTIKFGGWISNAKKYRLWNMHRGLMLSIVDSHTY 180

Query: 185 LVYNPATNEVFVLPKSPSQLSRIRPTELAAIVNFSDCLFSTECNFRVISFSKDTRTEKSM 244
            VYNPATNEVFVLPKSPSQLSR +PTELA I+NFSDCLFSTECNF VISFSKDTRT KSM
Sbjct: 181 HVYNPATNEVFVLPKSPSQLSRYQPTELATIINFSDCLFSTECNFSVISFSKDTRTVKSM 240

Query: 245 VLVEIYSCNKNEWFVSEFPLEKAVYLEKWNVSGAVFLDSTLFFMTNKRHVVAVQFHTRDQ 304
           VLVEIYS NK++W  SEFPLEK VYLE+WNVSGAVFLDSTL+FMTNKRHVVAVQFH+RD+
Sbjct: 241 VLVEIYSSNKHQWSASEFPLEKEVYLERWNVSGAVFLDSTLYFMTNKRHVVAVQFHSRDE 300

Query: 305 VSLYSMRLPSCIAKGFIESQLHVSQGCLYLAYHKFLNLWIWKHNGRSTDSDAWIPQFIFK 364
           VSLYS+RLPSCI +GF+ESQL VSQGCLYL+  KF NLWIWKH+GRSTDSD WIPQ IFK
Sbjct: 301 VSLYSIRLPSCIKRGFVESQLDVSQGCLYLSNRKFPNLWIWKHDGRSTDSDPWIPQLIFK 360

Query: 365 KSGTCLCQPVVEKNFRQVVREQTSPRIIIIHPEAPIVFINVHSSILRHRLFSLT 409
           KSGT +CQP+VEK FRQV RE  SP IIIIHPE P+VFI+V SSI    L + T
Sbjct: 361 KSGTSVCQPLVEKFFRQVAREHISPYIIIIHPEEPVVFIDVESSIFAFHLVNGT 414

[Close]

BLAST of Spo24547.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RCH1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_082410 PE=4 SV=1)

HSP 1 Score: 643.3 bits (1658), Expect = 2.200e-181
Identity = 312/351 (88.89%), Postives = 330/351 (94.02%), Query Frame = 1


		  
Query: 63  ISETQKGLELPTCVILFEIMRLD-----VKREFDLCYLSLGDYKITKWSMDDQTENATLE 122
           ++  +KGLELPTC ILFEI+ LD     VK E+DLCYLSLGDYKITKWS+DDQTENATLE
Sbjct: 11  LAHFRKGLELPTCGILFEIVHLDHNANDVKGEYDLCYLSLGDYKITKWSIDDQTENATLE 70

Query: 123 MTDHQNTHEDYHDGNVSGLLLGNLTIKFGGWISNAKKYELWNMHRGLMLSVLDTHTYLVY 182
           MTDHQNTHEDYHDGNVSGLLLGNLTIKFGGWISNAKKY++WNMHRGLMLS+LD+HTY VY
Sbjct: 71  MTDHQNTHEDYHDGNVSGLLLGNLTIKFGGWISNAKKYKIWNMHRGLMLSILDSHTYHVY 130

Query: 183 NPATNEVFVLPKSPSQLSRIRPTELAAIVNFSDCLFSTECNFRVISFSKDTRTEKSMVLV 242
           NPATNEVFVLPKSPSQLSRIRPTELAAIVNFSDCLFSTECNFRVISFSKDTRTEKSMVLV
Sbjct: 131 NPATNEVFVLPKSPSQLSRIRPTELAAIVNFSDCLFSTECNFRVISFSKDTRTEKSMVLV 190

Query: 243 EIYSCNKNEWFVSEFPLEKAVYLEKWNVSGAVFLDSTLFFMTNKRHVVAVQFHTRDQVSL 302
           EIYSCNK+EWFVSEFPLEKAVYLEKWNVSGAVFLD+TLFFMTNKRHVVAVQFHTRD+VSL
Sbjct: 191 EIYSCNKHEWFVSEFPLEKAVYLEKWNVSGAVFLDNTLFFMTNKRHVVAVQFHTRDEVSL 250

Query: 303 YSMRLPSCIAKGFIESQLHVSQGCLYLAYHKFLNLWIWKHNGRSTDSDAWIPQFIFKKSG 362
           YSMRLPSCIAKGF+ES+L+VSQGCLYL Y K  NLWIWKHNGRSTDSDAWIPQFIFKKSG
Sbjct: 251 YSMRLPSCIAKGFLESKLYVSQGCLYLTYRKSRNLWIWKHNGRSTDSDAWIPQFIFKKSG 310

Query: 363 TCLCQPVVEKNFRQVVREQTSPRIIIIHPEAPIVFINVHSSILRHRLFSLT 409
           TCLCQPVVEK FRQVVRE+TSPRIIIIHPEAPIVFINVHSSI    LF+ T
Sbjct: 311 TCLCQPVVEKFFRQVVREETSPRIIIIHPEAPIVFINVHSSIYAFHLFNGT 361

[Close]

BLAST of Spo24547.1 vs. UniProtKB/TrEMBL
Match: A0A0J7YLY1_BETVU (Uncharacterized protein (Fragment) OS=Beta vulgaris subsp. vulgaris GN=BVRB_018610 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.000e-81
Identity = 147/180 (81.67%), Postives = 159/180 (88.33%), Query Frame = 1


		  
Query: 5   LDCLNKEERWMSKCKAISRSRLPELPNEIWIEIMLKLPIKPLHICKCVSKTWHYHVLHIS 64
           +DCLNK+ERWMSKCKAISRS+LPELP+EIWI+IMLKLPIK LHICKCVSKTWH HVLHI 
Sbjct: 1   MDCLNKQERWMSKCKAISRSKLPELPDEIWIQIMLKLPIKSLHICKCVSKTWHSHVLHIF 60

Query: 65  ETQKGLELPTCVILFEIMRL----------DVKREFDLCYLSLGDYKITKWSMDDQTENA 124
           +TQKGLELP C ILFEI+R           DVKREFDL YLSLGDYKITKWS DDQTE+A
Sbjct: 61  DTQKGLELPPCGILFEILRTPGDFGYDNENDVKREFDLGYLSLGDYKITKWSNDDQTESA 120

Query: 125 TLEMTDHQNTHEDYHDGNVSGLLLGNLTIKFGGWISNAKKYELWNMHRGLMLSVLDTHTY 175
           TLEMTDHQNTH DYH+GN SGLLLGNLTIKFGGWISNAKKY LWNMHRGLMLS++D+HTY
Sbjct: 121 TLEMTDHQNTHGDYHNGNASGLLLGNLTIKFGGWISNAKKYRLWNMHRGLMLSIVDSHTY 180

[Close]

BLAST of Spo24547.1 vs. UniProtKB/TrEMBL
Match: A0A0J7YM31_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_017660 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.000e-72
Identity = 138/190 (72.63%), Postives = 155/190 (81.58%), Query Frame = 1


		  
Query: 234 MVLVEIYSCNKNEWFVSEFPLEKAVYLEKWNVSGAVFLDSTLFFMTNKRHVVAVQFHTRD 293
           MVLVEIYS NK++W  SEFPLEK VYLE+WNVSGAVFLDSTL+FMTNKRHVVAVQFH+RD
Sbjct: 1   MVLVEIYSSNKHQWSASEFPLEKEVYLERWNVSGAVFLDSTLYFMTNKRHVVAVQFHSRD 60

Query: 294 QVSLYSMRLPSCIAKGFIESQLHVSQGCLYLAYHKFLNLWIWKHNGRSTDSDAWIPQFIF 353
           +VSLYS+RLPSCI +GF+ESQL VSQGCLYL+  KF NLWIWKH+GRSTDSD WIPQ IF
Sbjct: 61  EVSLYSIRLPSCIKRGFVESQLDVSQGCLYLSNRKFPNLWIWKHDGRSTDSDPWIPQLIF 120

Query: 354 KKSGTCLCQPVVEKNFRQVVREQTSPRIIIIHPEAPIVFINVHSSILRHRLFSLT---CI 413
           KKSGT +CQP+VEK FRQV RE  SP IIII PE P+VFI+V SSI    LF+ T     
Sbjct: 121 KKSGTSVCQPLVEKFFRQVAREHISPYIIIIRPEEPVVFIDVESSIFAFHLFNGTVEKIA 180

Query: 414 HPSMHSIFLM 421
            PS   I L+
Sbjct: 181 EPSKEDILLV 190

[Close]

BLAST of Spo24547.1 vs. UniProtKB/TrEMBL
Match: A0A0J7YLX8_BETVU (Uncharacterized protein (Fragment) OS=Beta vulgaris subsp. vulgaris GN=BVRB_018030 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 9.400e-63
Identity = 120/148 (81.08%), Postives = 128/148 (86.49%), Query Frame = 1


		  
Query: 1   MFSHLDCLNKEERWMSKCKAISRSRLPELPNEIWIEIMLKLPIKPLHICKCVSKTWHYHV 60
           MFSH+DCLNK+ERWMSKCKAISRS+LPELP+EIWI+IMLKLPIK LHICKCVSKTWH HV
Sbjct: 1   MFSHMDCLNKQERWMSKCKAISRSKLPELPDEIWIQIMLKLPIKSLHICKCVSKTWHSHV 60

Query: 61  LHISETQKGLELPTCVILFEIMRL----------DVKREFDLCYLSLGDYKITKWSMDDQ 120
           LHI +TQKGLELP C ILFEIMR           DVKREFDL YLSLGDYKITKWS DDQ
Sbjct: 61  LHIFDTQKGLELPPCGILFEIMRTPGDFGYDNENDVKREFDLGYLSLGDYKITKWSKDDQ 120

Query: 121 TENATLEMTDHQNTHEDYHDGNVSGLLL 139
           TE+ATLEMTDHQNTH DYH+GN SGLLL
Sbjct: 121 TESATLEMTDHQNTHGDYHNGNASGLLL 148

The following BLAST results are available for this feature:

BLAST of Spo24547.1 vs. NCBI nr
BLAST of Spo24547.1 vs. UniProtKB/TrEMBL
BLAST of Spo24547.1 vs. ExPASy Swiss-Prot
BLAST of Spo24547.1 vs. TAIR (Arabidopsis)

BLAST of Spo24547.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|731378282\|ref\|XP_010668124.1\|	3.3e-194	79.9	PREDICTED: uncharacterized pro...	[more]
gi\|902213118\|gb\|KNA17183.1\|	3.2e-181	88.8	hypothetical protein SOVF_0824...	[more]
gi\|870749829\|gb\|KMS64601.1\|	2.9e-81	81.6	hypothetical protein BVRB_0186...	[more]
gi\|731381720\|ref\|XP_010669057.1\|	7.1e-72	72.6	PREDICTED: uncharacterized pro...	[more]
gi\|870750896\|gb\|KMS64657.1\|	1.4e-62	81.0	hypothetical protein BVRB_0180...	[more]

BLAST of Spo24547.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0J8B1I7_BETVU	2.3e-194	79.9	Uncharacterized protein OS=Bet...	[more]
A0A0K9RCH1_SPIOL	2.2e-181	88.8	Uncharacterized protein OS=Spi...	[more]
A0A0J7YLY1_BETVU	2.0e-81	81.6	Uncharacterized protein (Fragm...	[more]
A0A0J7YM31_BETVU	5.0e-72	72.6	Uncharacterized protein OS=Bet...	[more]
A0A0J7YLX8_BETVU	9.4e-63	81.0	Uncharacterized protein (Fragm...	[more]

BLAST of Spo24547.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo24547.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 26..61 score: 1.
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 21..61 score: 1.
None	No IPR available	GENE3D	1.20.1280.50		coord: 23..58 score: 8.

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0000723	telomere maintenance
biological_process	GO:0009987	cellular process
cellular_component	GO:0031410	cytoplasmic vesicle
cellular_component	GO:0009536	plastid
cellular_component	GO:0005657	replication fork
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003678	DNA helicase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo16527	0.85	Barchart \| Table
Spo16526	0.83	Barchart \| Table
Spo05342	0.79	Barchart \| Table
Spo17520	0.78	Barchart \| Table
Spo17519	0.70	Barchart \| Table
Spo19969	0.70	Barchart \| Table
Spo11055	0.67	Barchart \| Table