Spo24569 (gene)

Overview
NameSpo24569
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionFACT complex subunit SPT16
Locationchr4 : 38677487 .. 38679948 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGCCGCCTATCTCTCCTTCCTCCTCTCTGGTTAGTGCTTTCCCTAAATTCATTTTCTCGTTTATCTCTCCTTCCCGGCTTCCCCTCTCCGGTTCGCCGCTGCTCTTCCTCTCCTTGTTGCGTCCCTCCTCCACCGCTTCTACAACCGCCTGCCGGATTCTGGTTCCCTCGTTGGTTTGTATTTCCTAACCCTATTTTATTGATTTAATTTTCTGAATAATAATTTGATTTGTTGATTTTCTCACAAATATTCAGTTCAATTGTGTATTTAATTATGTTGAAATTTGGTAATTAGAGTTGTTTTGCTACACTACTAATAACATTGTTACCAAAATAATTTGGTGTACGATAGATTTTTGGTATTACCGTTGTTACTAGAAGTATGAGATGTCAATTTGTTAATAAAATATTGAAAATTGTTTTGGAGCCCAGTAAGATTAAGATTAAGGCGGAAAAAGTTGATATTTGTTACCCTCAAATTATCCAGAGTGGTGGTAAGTTTGATTTGAGGCCGAGTGCATCAAGTAATGATTATTTGTTGTATTTTGATCCAGGTAGTGTGATTATTTGTGCTATTTGATCTAGGTATAACAGTTATTGTTAAAATATATCAAGAACTATTCTGATTGATGCTAATCAAAATCAGAGTGAGGCCTATGAGGTGTTGCATAAGGCGCATGATGCGGCCATGTTGTGTATGTGATGGAGAAAGAGAAACCAGAATTGGTGAAGAATTTGACTAAGTCAGCTGGCACTGGTATTGGGCTTGAATTTAGGGAAACGGGTCTGAACTTGAATTCCAAGCATGAGAAAGAGTTAAAACCAGGGATGGTATTTAATGTTGGTTTAGGGTTTCAGCACTTGACGACTCAGGCCAGTAACCCGAAAAGCCAGAAATTTTCTCTGAAATCACCCTACGCCTTCTGCAATCAGTTTATATCCCTAGATGGATGTATGATATTATTTCCTAAGTATTGCAGTAGGAAAACTTTTATACTTACTTAATTACAATGCACTGATGATATTATATTGGTTTCCTTATAGGTATGTGCCAACAAAGACCAATAGGAGGATGAAAACAGTAAACTCTGAAATACAAAATTTATTAACCGGGATAATCGTTAAGAGAAAGAAGGCAATGGAGGCCGGCGAAGCTTCCAAGGATGATTTGTTGGGGATATTATTGGACTCCAACTACAAAGACACTGAAAATGTTCTCAGTAACAAGAAAAAACTAAGCATGACTTTCCAAGAATTGATTGATGAGTGCAAACTGTTCTACTTAGCAGGGCAAGAGTCAACCTCGGTGTTTCTAGCATGGAAAAAGATTTTTTTGGGAAAGCACAGACTGGCAAGCACGAGCACGGGAAGAAGTAGTTGCAACATTTGGAAAAAACGAGTCTGATTTTGAAGGCTTAAACCATTTGAAGATAGTAAGTGCTTAATTCATTCTTTTATAGTAGTAAGGTTCAATTCAACTGTTTAATAAAGTTAATTTATAAATGATGTTTGTTTGATCGTGTTGTAGGTGACAATGATAATGAATGAGGTGTTGAGGTTGTACCCACCAGTGTGTACAATCACCCGTAAGAATTTCAACCATGACGTACAGCTTGGAAATCTGACAGTCCCTCATGGTGCTATGGTTACGATGTCAGCATATCGTATTCAAAGAGATCCTAAAATATGGGGTGATGATGCAAAAGAGTTTAACCCACAGAGATTTTCAGAAGGGGTTGCAAAGGCTACAAAGGGGAATATTGCATTCTTTCCTTTTGGTTGGGGGCCGCGAATCTGCATCGGCCAAAACTTTGCACCTCTTGAAGCTAAAATGGCAGTGTCCATGGTTTTACAACGCTTTTCTTTTGAGCTATCACCGTCTTATACTCATGCTCCTACCACTATCCTCACTCTTCAACCCCAACAAGGTGCTCATCTCATTATACATAAGCTCAGGGACTAAGTTATTGCTACTATACATGTATACATGTAAGATTTCATCATGACACAAGCCAACCTTAGTATTTAATTTACTTAGTATACTGTCAGTGTTGCGGAGAAGGGCCCAGAAATCACAACCGCATTGAGCTCTAAGTTACTGAAGGATATTGCCTACTCATTCTATGAGGAAGAAGAAAAAGACCCACCGAGGATAATGGTTTCTTACCGAAATTTTCTTCTTGAATTGACTGTTTGTAGTATGTTGTTCTTGTGGTTTGTTGTTAAGTCAATTACACTTGTACTTTTATGTTTTCAATGTAATTGCTGGTTAACATGTGTGCTTTCTGGGTAATATAAGGTATAGATTTAAGAATTTGGTTGTATAGAGATGCTAGAAAAGAAAGTAGAAGTTGTGCATCGGCATAAGTTTGCTTATGAAAGAAAAAGATACCACAATTTAGTCCAAAATGAGTTTGGTAAAGATTATATGTCAAATAATGTAGAAGTTCATGATGTTTGT

mRNA sequence

TTTGCCGCCTATCTCTCCTTCCTCCTCTCTGGTTAGTGCTTTCCCTAAATTCATTTTCTCGTTTATCTCTCCTTCCCGGCTTCCCCTCTCCGGTTCGCCGCTGCTCTTCCTCTCCTTGTTGCGTCCCTCCTCCACCGCTTCTACAACCGCCTGCCGGATTCTGGTTCCCTCGTTGAGTGAGGCCTATGAGGTGTTGCATAAGGCGCATGATGCGGCCATGTTGTGTATGTGATGGAGAAAGAGAAACCAGAATTGGTGAAGAATTTGACTAAGTCAGCTGGCACTGGTATTGGGCTTGAATTTAGGGAAACGGGTCTGAACTTGAATTCCAAGCATGAGAAAGAGTTAAAACCAGGGATGGTATTTAATGTTGGTTTAGGGTTTCAGCACTTGACGACTCAGGCCAGTAACCCGAAAAGCCAGAAATTTTCTCTGAAATCACCCTACGCCTTCTGCAATCAGTTTATATCCCTAGATGGATGTATGTGCCAACAAAGACCAATAGGAGGATGAAAACAGTAAACTCTGAAATACAAAATTTATTAACCGGGATAATCGTTAAGAGAAAGAAGGCAATGGAGGCCGGCGAAGCTTCCAAGGATGATTTGTTGGGGATATTATTGGACTCCAACTACAAAGACACTGAAAATGTTCTCAGTAACAAGAAAAAACTAAGCATGACTTTCCAAGAATTGATTGATGAGTGCAAACTGTTCTACTTAGCAGGGCAAGAGTCAACCTCGGTGTTTCTAGCATGGAAAAAGATTTTTTTGGGAAAGCACAGACTGGCAAGCACGAGCACGGGAAGAAGTAGTTGCAACATTTGGAAAAAACGAGTCTGATTTTGAAGGCTTAAACCATTTGAAGATAGTGACAATGATAATGAATGAGGTGTTGAGGTTGTACCCACCAGTGTGTACAATCACCCGTAAGAATTTCAACCATGACGTACAGCTTGGAAATCTGACAGTCCCTCATGGTGCTATGGTTACGATGTCAGCATATCGTATTCAAAGAGATCCTAAAATATGGGGTGATGATGCAAAAGAGTTTAACCCACAGAGATTTTCAGAAGGGGTTGCAAAGGCTACAAAGGGGAATATTGCATTCTTTCCTTTTGGTTGGGGGCCGCGAATCTGCATCGGCCAAAACTTTGCACCTCTTGAAGCTAAAATGGCAGTGTCCATGGTTTTACAACGCTTTTCTTTTGAGCTATCACCGTCTTATACTCATGCTCCTACCACTATCCTCACTCTTCAACCCCAACAAGGTGCTCATCTCATTATACATAAGCTCAGGGACTAAGTTATTGCTACTATACATGTATACATGTAAGATTTCATCATGACACAAGCCAACCTTAGTATTTAATTTACTTAGTATACTGTCAGTGTTGCGGAGAAGGGCCCAGAAATCACAACCGCATTGAGCTCTAAGTTACTGAAGGATATTGCCTACTCATTCTATGAGGAAGAAGAAAAAGACCCACCGAGGATAATGGTTTCTTACCGAAATTTTCTTCTTGAATTGACTGTTTGTAGTATGTTGTTCTTGTGGTTTGTTGTTAAGTCAATTACACTTGTACTTTTATGTTTTCAATGTAATTGCTGGTTAACATGTGTGCTTTCTGGGTAATATAAGGTATAGATTTAAGAATTTGGTTGTATAGAGATGCTAGAAAAGAAAGTAGAAGTTGTGCATCGGCATAAGTTTGCTTATGAAAGAAAAAGATACCACAATTTAGTCCAAAATGAGTTTGGTAAAGATTATATGTCAAATAATGTAGAAGTTCATGATGTTTGT

Coding sequence (CDS)

ATGGAGAAAGAGAAACCAGAATTGGTGAAGAATTTGACTAAGTCAGCTGGCACTGGTATTGGGCTTGAATTTAGGGAAACGGGTCTGAACTTGAATTCCAAGCATGAGAAAGAGTTAAAACCAGGGATGGTATTTAATGTTGGTTTAGGGTTTCAGCACTTGACGACTCAGGCCAGTAACCCGAAAAGCCAGAAATTTTCTCTGAAATCACCCTACGCCTTCTGCAATCAGTTTATATCCCTAGATGGATGTATGTGCCAACAAAGACCAATAGGAGGATGA

Protein sequence

MEKEKPELVKNLTKSAGTGIGLEFRETGLNLNSKHEKELKPGMVFNVGLGFQHLTTQASNPKSQKFSLKSPYAFCNQFISLDGCMCQQRPIGG
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo24569.1Spo24569.1mRNA


Homology
[Close]
BLAST of Spo24569.1 vs. NCBI nr
Match: gi|902230365|gb|KNA21836.1| (hypothetical protein SOVF_039660 [Spinacia oleracea])

HSP 1 Score: 122.5 bits (306), Expect = 4.000e-25
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 1 

		  

Query: 1   MEKEKPELVKNLTKSAGTGIGLEFRETGLNLNSKHEKELKPGMVFNVGLGFQHLTTQASN 60
           +EKEKPELVKNLTKSAGTGIGLEFRETGLNLN+K+EKELK GMVFNV LGFQ+LTTQASN
Sbjct: 346 VEKEKPELVKNLTKSAGTGIGLEFRETGLNLNAKNEKELKIGMVFNVVLGFQNLTTQASN 405

Query: 61  PKSQKFSL 69
           PKSQ FSL
Sbjct: 406 PKSQNFSL 413
[Close]
BLAST of Spo24569.1 vs. NCBI nr
Match: gi|731327442|ref|XP_010674525.1| (PREDICTED: FACT complex subunit SPT16 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 108.2 bits (269), Expect = 7.700e-21
Identity = 53/68 (77.94%), Postives = 60/68 (88.24%), Query Frame = 1 

		  

Query: 1   MEKEKPELVKNLTKSAGTGIGLEFRETGLNLNSKHEKELKPGMVFNVGLGFQHLTTQASN 60
           +EKE PELV NLTKSAGTGIGLEFRE+GL+LN+K++K LKPGMVFNV LGFQ L TQA N
Sbjct: 346 VEKEAPELVGNLTKSAGTGIGLEFRESGLSLNAKNDKVLKPGMVFNVSLGFQGLKTQAVN 405

Query: 61  PKSQKFSL 69
           PKSQ F+L
Sbjct: 406 PKSQNFAL 413
[Close]
BLAST of Spo24569.1 vs. NCBI nr
Match: gi|359487575|ref|XP_002276824.2| (PREDICTED: FACT complex subunit SPT16-like [Vitis vinifera])

HSP 1 Score: 108.2 bits (269), Expect = 7.700e-21
Identity = 50/68 (73.53%), Postives = 61/68 (89.71%), Query Frame = 1 

		  

Query: 1   MEKEKPELVKNLTKSAGTGIGLEFRETGLNLNSKHEKELKPGMVFNVGLGFQHLTTQASN 60
           +EK+ PELV NLTKSAGTGIGLEFRE+GLNLN+K+++ LKPGMVFNV LGFQ+L T  +N
Sbjct: 359 VEKDAPELVSNLTKSAGTGIGLEFRESGLNLNAKNDRVLKPGMVFNVSLGFQNLQTDTNN 418

Query: 61  PKSQKFSL 69
           PK+QKFS+
Sbjct: 419 PKTQKFSV 426
[Close]
BLAST of Spo24569.1 vs. NCBI nr
Match: gi|147775767|emb|CAN64799.1| (hypothetical protein VITISV_017318 [Vitis vinifera])

HSP 1 Score: 107.8 bits (268), Expect = 1.000e-20
Identity = 50/68 (73.53%), Postives = 61/68 (89.71%), Query Frame = 1 

		  

Query: 1   MEKEKPELVKNLTKSAGTGIGLEFRETGLNLNSKHEKELKPGMVFNVGLGFQHLTTQASN 60
           +EK+ PELV NLTKSAGTGIGLEFRE+GLNLN+K+++ LKPGMVFNV LGFQ+L T  +N
Sbjct: 359 VEKDAPELVTNLTKSAGTGIGLEFRESGLNLNAKNDRVLKPGMVFNVSLGFQNLQTDTNN 418

Query: 61  PKSQKFSL 69
           PK+QKFS+
Sbjct: 419 PKTQKFSV 426
[Close]
BLAST of Spo24569.1 vs. NCBI nr
Match: gi|802574777|ref|XP_012068781.1| (PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas])

HSP 1 Score: 106.3 bits (264), Expect = 2.900e-20
Identity = 50/68 (73.53%), Postives = 60/68 (88.24%), Query Frame = 1 

		  

Query: 1   MEKEKPELVKNLTKSAGTGIGLEFRETGLNLNSKHEKELKPGMVFNVGLGFQHLTTQASN 60
           +EKE PELV NLTKSAGTGIGLEFRE+GLNLN+K+++ L+P MVFNV LGFQ+L  Q +N
Sbjct: 349 VEKEAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVLEPNMVFNVSLGFQNLQNQTNN 408

Query: 61  PKSQKFSL 69
           PK+QKFSL
Sbjct: 409 PKTQKFSL 416
[Close]
BLAST of Spo24569.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQM2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_039660 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.800e-25
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 1 

		  

Query: 1   MEKEKPELVKNLTKSAGTGIGLEFRETGLNLNSKHEKELKPGMVFNVGLGFQHLTTQASN 60
           +EKEKPELVKNLTKSAGTGIGLEFRETGLNLN+K+EKELK GMVFNV LGFQ+LTTQASN
Sbjct: 346 VEKEKPELVKNLTKSAGTGIGLEFRETGLNLNAKNEKELKIGMVFNVVLGFQNLTTQASN 405

Query: 61  PKSQKFSL 69
           PKSQ FSL
Sbjct: 406 PKSQNFSL 413
[Close]
BLAST of Spo24569.1 vs. UniProtKB/TrEMBL
Match: F6I4V8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00580 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.400e-21
Identity = 50/68 (73.53%), Postives = 61/68 (89.71%), Query Frame = 1 

		  

Query: 1   MEKEKPELVKNLTKSAGTGIGLEFRETGLNLNSKHEKELKPGMVFNVGLGFQHLTTQASN 60
           +EK+ PELV NLTKSAGTGIGLEFRE+GLNLN+K+++ LKPGMVFNV LGFQ+L T  +N
Sbjct: 359 VEKDAPELVSNLTKSAGTGIGLEFRESGLNLNAKNDRVLKPGMVFNVSLGFQNLQTDTNN 418

Query: 61  PKSQKFSL 69
           PK+QKFS+
Sbjct: 419 PKTQKFSV 426
[Close]
BLAST of Spo24569.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CQ60_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g079740 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.400e-21
Identity = 53/68 (77.94%), Postives = 60/68 (88.24%), Query Frame = 1 

		  

Query: 1   MEKEKPELVKNLTKSAGTGIGLEFRETGLNLNSKHEKELKPGMVFNVGLGFQHLTTQASN 60
           +EKE PELV NLTKSAGTGIGLEFRE+GL+LN+K++K LKPGMVFNV LGFQ L TQA N
Sbjct: 346 VEKEAPELVGNLTKSAGTGIGLEFRESGLSLNAKNDKVLKPGMVFNVSLGFQGLKTQAVN 405

Query: 61  PKSQKFSL 69
           PKSQ F+L
Sbjct: 406 PKSQNFAL 413
[Close]
BLAST of Spo24569.1 vs. UniProtKB/TrEMBL
Match: A5AQP4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017318 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 7.000e-21
Identity = 50/68 (73.53%), Postives = 61/68 (89.71%), Query Frame = 1 

		  

Query: 1   MEKEKPELVKNLTKSAGTGIGLEFRETGLNLNSKHEKELKPGMVFNVGLGFQHLTTQASN 60
           +EK+ PELV NLTKSAGTGIGLEFRE+GLNLN+K+++ LKPGMVFNV LGFQ+L T  +N
Sbjct: 359 VEKDAPELVTNLTKSAGTGIGLEFRESGLNLNAKNDRVLKPGMVFNVSLGFQNLQTDTNN 418

Query: 61  PKSQKFSL 69
           PK+QKFS+
Sbjct: 419 PKTQKFSV 426
[Close]
BLAST of Spo24569.1 vs. UniProtKB/TrEMBL
Match: A0A067KWM6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24615 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.000e-20
Identity = 50/68 (73.53%), Postives = 60/68 (88.24%), Query Frame = 1 

		  

Query: 1   MEKEKPELVKNLTKSAGTGIGLEFRETGLNLNSKHEKELKPGMVFNVGLGFQHLTTQASN 60
           +EKE PELV NLTKSAGTGIGLEFRE+GLNLN+K+++ L+P MVFNV LGFQ+L  Q +N
Sbjct: 349 VEKEAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVLEPNMVFNVSLGFQNLQNQTNN 408

Query: 61  PKSQKFSL 69
           PK+QKFSL
Sbjct: 409 PKTQKFSL 416
[Close]
BLAST of Spo24569.1 vs. ExPASy Swiss-Prot
Match: SPT16_MAIZE (FACT complex subunit SPT16 OS=Zea mays GN=SPT16 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.300e-17
Identity = 39/68 (57.35%), Postives = 57/68 (83.82%), Query Frame = 1 

		  

Query: 1   MEKEKPELVKNLTKSAGTGIGLEFRETGLNLNSKHEKELKPGMVFNVGLGFQHLTTQASN 60
           +E++ PEL+ NLTKSAGTGIGLEFRE+GLNLN+K+++ +K GMVFNV LG  ++  + ++
Sbjct: 349 IERDAPELLPNLTKSAGTGIGLEFRESGLNLNAKNDRRIKKGMVFNVSLGLHNIQAETTS 408

Query: 61  PKSQKFSL 69
            K+++FSL
Sbjct: 409 EKTKQFSL 416
[Close]
BLAST of Spo24569.1 vs. ExPASy Swiss-Prot
Match: SPT16_ORYSJ (FACT complex subunit SPT16 OS=Oryza sativa subsp. japonica GN=SPT16 PE=2 SV=2)

HSP 1 Score: 87.8 bits (216), Expect = 6.800e-17
Identity = 40/68 (58.82%), Postives = 55/68 (80.88%), Query Frame = 1 

		  

Query: 1   MEKEKPELVKNLTKSAGTGIGLEFRETGLNLNSKHEKELKPGMVFNVGLGFQHLTTQASN 60
           +EK  PEL++NLTKSAGTGIGLEFRE+GLNLN K+++ +K GMVFNV LG  +L  +  +
Sbjct: 352 IEKNAPELLRNLTKSAGTGIGLEFRESGLNLNPKNDRIIKAGMVFNVSLGLHNLQAEKKS 411

Query: 61  PKSQKFSL 69
            K++++SL
Sbjct: 412 EKTKQYSL 419
[Close]
BLAST of Spo24569.1 vs. ExPASy Swiss-Prot
Match: SPT16_ARATH (FACT complex subunit SPT16 OS=Arabidopsis thaliana GN=SPT16 PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.800e-17
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 1 

		  

Query: 1   MEKEKPELVKNLTKSAGTGIGLEFRETGLNLNSKHEKELKPGMVFNVGLGFQHLTTQA-S 60
           +EK  PE V  LTKSAGTGIGLEFRE+GLN+N+K++K L+P M FNV LGFQ+L  ++ S
Sbjct: 362 VEKNAPEFVDKLTKSAGTGIGLEFRESGLNINAKNDKVLRPKMAFNVSLGFQNLECESES 421

Query: 61  NPKSQKFSL 69
             K++KFSL
Sbjct: 422 RSKNKKFSL 430
[Close]
BLAST of Spo24569.1 vs. ExPASy Swiss-Prot
Match: SP16H_HUMAN (FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT16H PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.200e-11
Identity = 31/69 (44.93%), Postives = 50/69 (72.46%), Query Frame = 1 

		  

Query: 1   MEKEKPELVKNLTKSAGTGIGLEFRETGLNLNSKHEKELKPGMVFNVGLGFQHLTT-QAS 60
           ++K+KPEL+  +TK+ G G+G+EFRE  L +NSK++ +LK GMVF++ LGF  LT  +  
Sbjct: 333 VKKQKPELLNKITKNLGFGMGIEFREGSLVINSKNQYKLKKGMVFSINLGFSDLTNKEGK 392

Query: 61  NPKSQKFSL 69
            P+ + ++L
Sbjct: 393 KPEEKTYAL 401
[Close]
BLAST of Spo24569.1 vs. ExPASy Swiss-Prot
Match: SP16H_MOUSE (FACT complex subunit SPT16 OS=Mus musculus GN=Supt16h PE=1 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 3.200e-11
Identity = 31/69 (44.93%), Postives = 50/69 (72.46%), Query Frame = 1 

		  

Query: 1   MEKEKPELVKNLTKSAGTGIGLEFRETGLNLNSKHEKELKPGMVFNVGLGFQHLTT-QAS 60
           ++K+KPEL+  +TK+ G G+G+EFRE  L +NSK++ +LK GMVF++ LGF  LT  +  
Sbjct: 333 VKKQKPELLNKITKNLGFGMGIEFREGSLVINSKNQYKLKKGMVFSINLGFSDLTNKEGK 392

Query: 61  NPKSQKFSL 69
            P+ + ++L
Sbjct: 393 KPEEKTYAL 401
[Close]
BLAST of Spo24569.1 vs. TAIR (Arabidopsis)
Match: AT4G10710.1 (global transcription factor C)

HSP 1 Score: 87.4 bits (215), Expect = 5.000e-18
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 1 

		  

Query: 1   MEKEKPELVKNLTKSAGTGIGLEFRETGLNLNSKHEKELKPGMVFNVGLGFQHLTTQA-S 60
           +EK  PE V  LTKSAGTGIGLEFRE+GLN+N+K++K L+P M FNV LGFQ+L  ++ S
Sbjct: 362 VEKNAPEFVDKLTKSAGTGIGLEFRESGLNINAKNDKVLRPKMAFNVSLGFQNLECESES 421

Query: 61  NPKSQKFSL 69
             K++KFSL
Sbjct: 422 RSKNKKFSL 430
The following BLAST results are available for this feature:
BLAST of Spo24569.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902230365|gb|KNA21836.1|4.0e-2589.7hypothetical protein SOVF_0396... [more]
gi|731327442|ref|XP_010674525.1|7.7e-2177.9PREDICTED: FACT complex subuni... [more]
gi|359487575|ref|XP_002276824.2|7.7e-2173.5PREDICTED: FACT complex subuni... [more]
gi|147775767|emb|CAN64799.1|1.0e-2073.5hypothetical protein VITISV_01... [more]
gi|802574777|ref|XP_012068781.1|2.9e-2073.5PREDICTED: FACT complex subuni... [more]
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BLAST of Spo24569.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RQM2_SPIOL2.8e-2589.7Uncharacterized protein OS=Spi... [more]
F6I4V8_VITVI5.4e-2173.5Putative uncharacterized prote... [more]
A0A0J8CQ60_BETVU5.4e-2177.9Uncharacterized protein OS=Bet... [more]
A5AQP4_VITVI7.0e-2173.5Putative uncharacterized prote... [more]
A0A067KWM6_JATCU2.0e-2073.5Uncharacterized protein OS=Jat... [more]
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BLAST of Spo24569.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SPT16_MAIZE2.3e-1757.3FACT complex subunit SPT16 OS=... [more]
SPT16_ORYSJ6.8e-1758.8FACT complex subunit SPT16 OS=... [more]
SPT16_ARATH8.8e-1762.3FACT complex subunit SPT16 OS=... [more]
SP16H_HUMAN3.2e-1144.9FACT complex subunit SPT16 OS=... [more]
SP16H_MOUSE3.2e-1144.9FACT complex subunit SPT16 OS=... [more]
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BLAST of Spo24569.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT4G10710.15.0e-1862.3global transcription factor C[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000994Peptidase M24, structural domainGENE3D3.90.230.10coord: 1..57
score: 1.1
IPR000994Peptidase M24, structural domainPFAMPF00557Peptidase_M24coord: 10..53
score: 3.
IPR000994Peptidase M24, structural domainunknownSSF55920Creatinase/aminopeptidasecoord: 9..52
score: 2.8
NoneNo IPR availablePANTHERPTHR13980CDC68 RELATEDcoord: 2..68
score: 4.1
NoneNo IPR availablePANTHERPTHR13980:SF15FACT COMPLEX SUBUNIT SPT16coord: 2..68
score: 4.1

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0019287 isopentenyl diphosphate biosynthetic process, mevalonate pathway
biological_process GO:0000280 nuclear division
biological_process GO:0007000 nucleolus organization
biological_process GO:0016310 phosphorylation
biological_process GO:0016126 sterol biosynthetic process
cellular_component GO:0005829 cytosol
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0004496 mevalonate kinase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo166190.89Barchart | Table
Spo147700.72Barchart | Table
Spo196260.71Barchart | Table
Spo147320.70Barchart | Table
Spo255850.66Barchart | Table