Spo24609 (gene)

Overview
NameSpo24609
Typegene
OrganismSpinacia oleracea (Spinach)
Descriptionserine-rich protein-related
Locationchr4 : 104776976 .. 104777236 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCTACCCAATTGTCTCGCTCCCTAACGGCGTTGGTGAGTCTCTTGGTGGCCAACCTAGCCGCCGTGGCACGTGGCAATCACCAGAGATGGTGGCGGCGGAGGTGGTGATACAACAACGCGACGTGGCTATACGCGGCGGCAGTAGTGGTGGAAGAGAGACACAATGTGTTTGTTCACCCACAAGACATCCGGGATCTTTTAGGTGTAGGAATCATCGTGCTGATTATAGGTGGATTGGTCACGCTGAATCTAGTTAA

mRNA sequence

ATGTGCTACCCAATTGTCTCGCTCCCTAACGGCGTTGGTGAGTCTCTTGGTGGCCAACCTAGCCGCCGTGGCACGTGGCAATCACCAGAGATGGTGGCGGCGGAGGTGGTGATACAACAACGCGACGTGGCTATACGCGGCGGCAGTAGTGGTGGAAGAGAGACACAATGTGTTTGTTCACCCACAAGACATCCGGGATCTTTTAGGTGTAGGAATCATCGTGCTGATTATAGGTGGATTGGTCACGCTGAATCTAGTTAA

Coding sequence (CDS)

ATGTGCTACCCAATTGTCTCGCTCCCTAACGGCGTTGGTGAGTCTCTTGGTGGCCAACCTAGCCGCCGTGGCACGTGGCAATCACCAGAGATGGTGGCGGCGGAGGTGGTGATACAACAACGCGACGTGGCTATACGCGGCGGCAGTAGTGGTGGAAGAGAGACACAATGTGTTTGTTCACCCACAAGACATCCGGGATCTTTTAGGTGTAGGAATCATCGTGCTGATTATAGGTGGATTGGTCACGCTGAATCTAGTTAA

Protein sequence

MCYPIVSLPNGVGESLGGQPSRRGTWQSPEMVAAEVVIQQRDVAIRGGSSGGRETQCVCSPTRHPGSFRCRNHRADYRWIGHAESS
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo24609.1Spo24609.1mRNA


Homology
[Close]
BLAST of Spo24609.1 vs. NCBI nr
Match: gi|870848501|gb|KMT00790.1| (hypothetical protein BVRB_9g220700 isoform B [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 105.5 bits (262), Expect = 4.600e-20
Identity = 50/83 (60.24%), Postives = 56/83 (67.47%), Query Frame = 1 

		  

Query: 1  MCYPIVSLPNGVGESLGGQPSRRGTWQSPEMVAAEVVIQQRDVAIRGGSSGGRETQCVCS 60
          MCYPIV LP G  +S      RRG W++P MV    V  QR+V I  GS+ GRE QCVCS
Sbjct: 1  MCYPIVQLPKGTDDS------RRGEWRTPRMVVQAEVAVQREVVI-SGSNDGRERQCVCS 60

Query: 61 PTRHPGSFRCRNHRADYRWIGHA 84
          PT HPGSFRCRNHRA+Y W  HA
Sbjct: 61 PTSHPGSFRCRNHRANYNWTSHA 76
[Close]
BLAST of Spo24609.1 vs. NCBI nr
Match: gi|870848500|gb|KMT00789.1| (hypothetical protein BVRB_9g220700 isoform A [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 76.3 bits (186), Expect = 3.000e-11
Identity = 36/53 (67.92%), Postives = 41/53 (77.36%), Query Frame = 1 

		  

Query: 31 MVAAEVVIQQRDVAIRGGSSGGRETQCVCSPTRHPGSFRCRNHRADYRWIGHA 84
          +V AEV +Q R+V I  GS+ GRE QCVCSPT HPGSFRCRNHRA+Y W  HA
Sbjct: 2  VVQAEVAVQ-REVVI-SGSNDGRERQCVCSPTSHPGSFRCRNHRANYNWTSHA 52
[Close]
BLAST of Spo24609.1 vs. NCBI nr
Match: gi|698478570|ref|XP_009786429.1| (PREDICTED: uncharacterized protein LOC104234552 [Nicotiana sylvestris])

HSP 1 Score: 66.6 bits (161), Expect = 2.400e-8
Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = 1 

		  

Query: 1  MCYPIVSLPNGVGESLGGQPSRRGTWQSPEMVAAEVVIQQRDVAIRGGSSGGRETQCVCS 60
          MCY      +GV   +G    R G ++    VA E V      +I G  +G R+ QCVCS
Sbjct: 1  MCY------SGVPYWVGAHDKREGRYRP---VAREQVASASTGSI-GAGAGMRKFQCVCS 60

Query: 61 PTRHPGSFRCRNHRADYRWI 81
          PT+HPGSFRCR+H +DY+W+
Sbjct: 61 PTKHPGSFRCRHHHSDYKWV 70
[Close]
BLAST of Spo24609.1 vs. NCBI nr
Match: gi|694440730|ref|XP_009347169.1| (PREDICTED: uncharacterized protein LOC103938850 [Pyrus x bretschneideri])

HSP 1 Score: 66.2 bits (160), Expect = 3.100e-8
Identity = 40/96 (41.67%), Postives = 50/96 (52.08%), Query Frame = 1 

		  

Query: 1  MCYPIVSLPNGVGESLGG----QPSRRGTWQSPEM-VAAEVVIQQR----------DVAI 60
          MC+P   +PN V   +      Q  RR  W+  E+ VA E  +  R          + A 
Sbjct: 1  MCHPS-GVPNSVRRRVRDLAVLQQYRR--WRLLEVYVAVETAVNLRAAAAAARWVGEAAA 60

Query: 61 RGGSSGGRETQCVCSPTRHPGSFRCRNHRADYRWIG 82
           GGS GG   +C+CSPTRHPGSFRCR H A+Y W G
Sbjct: 61 GGGSGGGNTRRCLCSPTRHPGSFRCRQHHAEYAWGG 93
[Close]
BLAST of Spo24609.1 vs. NCBI nr
Match: gi|697098741|ref|XP_009628211.1| (PREDICTED: uncharacterized protein LOC104118631 [Nicotiana tomentosiformis])

HSP 1 Score: 62.4 bits (150), Expect = 4.500e-7
Identity = 31/81 (38.27%), Postives = 45/81 (55.56%), Query Frame = 1 

		  

Query: 1  MCYPIVSLPNGVGESLGGQPSRRGTWQSPEMVAAEVVIQQRDVAIRGGSSGGR-ETQCVC 60
          MCY      +GV   +G Q  R G  +   +   +V      ++I  G    + + QCVC
Sbjct: 1  MCY------SGVPYWVGNQCKREGRGRYRPVAREQVTSVSTGISIGAGMKKFQFQFQCVC 60

Query: 61 SPTRHPGSFRCRNHRADYRWI 81
          SPT+HPGSFRCR+H +DY+W+
Sbjct: 61 SPTKHPGSFRCRHHHSDYKWV 75
[Close]
BLAST of Spo24609.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BHB2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g220700 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.200e-20
Identity = 50/83 (60.24%), Postives = 56/83 (67.47%), Query Frame = 1 

		  

Query: 1  MCYPIVSLPNGVGESLGGQPSRRGTWQSPEMVAAEVVIQQRDVAIRGGSSGGRETQCVCS 60
          MCYPIV LP G  +S      RRG W++P MV    V  QR+V I  GS+ GRE QCVCS
Sbjct: 1  MCYPIVQLPKGTDDS------RRGEWRTPRMVVQAEVAVQREVVI-SGSNDGRERQCVCS 60

Query: 61 PTRHPGSFRCRNHRADYRWIGHA 84
          PT HPGSFRCRNHRA+Y W  HA
Sbjct: 61 PTSHPGSFRCRNHRANYNWTSHA 76
[Close]
BLAST of Spo24609.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BL71_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g220700 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.100e-11
Identity = 36/53 (67.92%), Postives = 41/53 (77.36%), Query Frame = 1 

		  

Query: 31 MVAAEVVIQQRDVAIRGGSSGGRETQCVCSPTRHPGSFRCRNHRADYRWIGHA 84
          +V AEV +Q R+V I  GS+ GRE QCVCSPT HPGSFRCRNHRA+Y W  HA
Sbjct: 2  VVQAEVAVQ-REVVI-SGSNDGRERQCVCSPTSHPGSFRCRNHRANYNWTSHA 52
[Close]
BLAST of Spo24609.1 vs. UniProtKB/TrEMBL
Match: M1BDE2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400016536 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.400e-7
Identity = 37/81 (45.68%), Postives = 45/81 (55.56%), Query Frame = 1 

		  

Query: 1  MCYPIVSLPNGVGESLGGQPSRRGTWQSPEMVAAEVVIQQRDVAIRGGSSG--GRETQCV 60
          MCYP              +P  RG   + E V  +VV   R+V+   GSS   G   QCV
Sbjct: 1  MCYP------------RERPGERGV--AREQVEIQVV--SREVSNGNGSSAEAGMMKQCV 60

Query: 61 CSPTRHPGSFRCRNHRADYRW 80
          CSPT+HPGSFRCR+H ADY+W
Sbjct: 61 CSPTQHPGSFRCRHHHADYKW 65
[Close]
BLAST of Spo24609.1 vs. UniProtKB/TrEMBL
Match: A0A022QBQ3_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a018247mg PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.100e-7
Identity = 35/84 (41.67%), Postives = 45/84 (53.57%), Query Frame = 1 

		  

Query: 1  MCYPIVSLPNGVGESLGGQPSRRGTWQSPEMVA-AEVVIQQRDVAIRGGSSGG---RETQ 60
          MCYP V+   G  +      +RR    +P   A  EV ++ R  A  GG  GG       
Sbjct: 1  MCYPQVAYWEGGYKCA----TRRRQLIAPAAEADTEVAVRGRQEANTGGGGGGGGGMTKV 60

Query: 61 CVCSPTRHPGSFRCRNHRADYRWI 81
          CVCSPT HPGSFRCR+H  +Y+W+
Sbjct: 61 CVCSPTGHPGSFRCRHHHGEYQWV 80
[Close]
BLAST of Spo24609.1 vs. UniProtKB/TrEMBL
Match: A0A059CNB2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C01049 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.100e-7
Identity = 34/83 (40.96%), Postives = 43/83 (51.81%), Query Frame = 1 

		  

Query: 1  MCYPIVSLPNGVGESLGGQPSRRGTWQSPEMVA----AEVVIQQRDVAIRGGSSGGRETQ 60
          MC+P V +      S  G P+R   WQ   +      AE  +  R+ A   GS GG   +
Sbjct: 1  MCHPNVPV------SSLGDPARPSRWQVSPVTGISSTAEAGVLAREAAPEAGSRGGVMRR 60

Query: 61 CVCSPTRHPGSFRCRNHRADYRW 80
          C+CSPT H GSFRCR H A+Y W
Sbjct: 61 CMCSPTGHAGSFRCRLHIAEYVW 77
[Close]
BLAST of Spo24609.1 vs. TAIR (Arabidopsis)
Match: AT1G52342.1 (unknown protein)

HSP 1 Score: 55.1 bits (131), Expect = 2.500e-8
Identity = 20/40 (50.00%), Postives = 30/40 (75.00%), Query Frame = 1 

		  

Query: 47 GGSSGGRETQCVCSPTRHPGSFRCRNHRADYRWIGHAESS 87
          GG  GG + +CVCSP++HP SF+CR H+ +Y+W+  + SS
Sbjct: 40 GGDGGGGKKKCVCSPSKHPRSFKCRYHQHEYQWLPSSSSS 79
The following BLAST results are available for this feature:
BLAST of Spo24609.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|870848501|gb|KMT00790.1|4.6e-2060.2hypothetical protein BVRB_9g22... [more]
gi|870848500|gb|KMT00789.1|3.0e-1167.9hypothetical protein BVRB_9g22... [more]
gi|698478570|ref|XP_009786429.1|2.4e-843.7PREDICTED: uncharacterized pro... [more]
gi|694440730|ref|XP_009347169.1|3.1e-841.6PREDICTED: uncharacterized pro... [more]
gi|697098741|ref|XP_009628211.1|4.5e-738.2PREDICTED: uncharacterized pro... [more]
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BLAST of Spo24609.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0J8BHB2_BETVU3.2e-2060.2Uncharacterized protein OS=Bet... [more]
A0A0J8BL71_BETVU2.1e-1167.9Uncharacterized protein OS=Bet... [more]
M1BDE2_SOLTU1.4e-745.6Uncharacterized protein OS=Sol... [more]
A0A022QBQ3_ERYGU4.1e-741.6Uncharacterized protein OS=Ery... [more]
A0A059CNB2_EUCGR4.1e-740.9Uncharacterized protein OS=Euc... [more]
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BLAST of Spo24609.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo24609.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G52342.12.5e-850.0unknown protein[more]
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009553 embryo sac development
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0022607 cellular component assembly
biological_process GO:0009987 cellular process
biological_process GO:0010227 floral organ abscission
biological_process GO:0034660 ncRNA metabolic process
biological_process GO:1901566 organonitrogen compound biosynthetic process
biological_process GO:0006796 phosphate-containing compound metabolic process
biological_process GO:0009657 plastid organization
biological_process GO:0008152 metabolic process
biological_process GO:0044281 small molecule metabolic process
biological_process GO:0006729 tetrahydrobiopterin biosynthetic process
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0046685 response to arsenic-containing substance
biological_process GO:0009734 auxin-activated signaling pathway
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0009058 biosynthetic process
biological_process GO:0018130 heterocycle biosynthetic process
biological_process GO:0009555 pollen development
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0048439 flower morphogenesis
biological_process GO:0016573 histone acetylation
biological_process GO:0006811 ion transport
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0048573 photoperiodism, flowering
biological_process GO:0016567 protein ubiquitination
biological_process GO:0009954 proximal/distal pattern formation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0008287 protein serine/threonine phosphatase complex
cellular_component GO:0005886 plasma membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0000123 histone acetyltransferase complex
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0015297 antiporter activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0000822 inositol hexakisphosphate binding
molecular_function GO:0015238 drug transmembrane transporter activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0080048 GDP-D-glucose phosphorylase activity
molecular_function GO:0016758 transferase activity, transferring hexosyl groups
molecular_function GO:0016779 nucleotidyltransferase activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0020037 heme binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0004722 protein serine/threonine phosphatase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003712 transcription coregulator activity
molecular_function GO:0004402 histone acetyltransferase activity
molecular_function GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity
molecular_function GO:0005516 calmodulin binding
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
RNA-Seq Expression