Spo24686 (gene)

Overview
NameSpo24686
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionTrihelix transcription factor GT-1 (Trihelix DNA-binding protein GT-1)
Locationchr5 : 21611663 .. 21615176 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCTACATCTTCAGGAAGTATGCTATTTTAATTCAATTATGTAAATTTTATGTTATTATAATTCAATTTTTAATTTTTCCTCATTTTGGATGAATTATTCCCTTCTAAATGTCACTCTAAATCTCCAATCCTATTTGATTTAGCTGCTGCTTTTTGCTTCATCTGATGTACGTCATTGGTTCTTTTTGCTATCATTCCCTTTGCTTTGGCTATTGCATGCTGGTTTGCTTGTTGTTTGCTGAGATCTACTCCGATTTGTTTGTTTTCTGCAATTAAATCTAGAGATATGAATGTCTACATCATCTCTGAACTATGCTTAATATATCCAAAATGTCCCTCACACAGGTAATGATCCGTTTGCTGTCAACCTTGAGAGGAATTCCAATCACGGTGAACACTTGTTTGGTGTTCATGAGACTGATTTTCTTGCAGCTAATGAAGTCTCTGCTTTGAATTGGAAAGGTACTCATAAGTTTTCCCATTGTCAGTCATTTTCCACATCTATCATTGACGTTGATGAAGGGTGGTCCTTCTGCATCTGTTTTGTTCAATTCTATTAGGTTGGTGTGGCTGAAAGGTGAATCTGTCAGCCATTGTGGTAGTTAGGAAAGATGGAAAGAGAATTCTTTTTTGTTGATTTCCATACTTGGATCTTGTCATGTGCATGGCTTTAGTAATGACCCAAAAAAACTGACACAAACACGCATAGTTGGATCAGTCAATCCGCACCTCATTTACCTGTATAAGTCATGTGTTGAGTTGAACTTACATTTTCATTATTATAGTACCTATTCTCATGTTTTTCCTGTCTCTGTGGGCCTATGGGTTTAGGATACACTCAATTTTTATGATTGTTCTGTTTCTTAGACACCATACAAGTATTACTTGGTAATCATTCTGTTAAAAGAATGTCACGTGTTGGCTTGATTGTCGCAAAGCCATCAATATCGGGTTCCTGCCATGGTGTCACTATCCGCCTTTTGGAGTTTGCTTTATTGTCACAAAGCCATTAGAATTGGGTTCCTTCCATGGTGTCGCTACCTGCCTTTCAGGCTTTTGGCGGCAGGGCCAAAGTCAATGAGTAATGTGCAAAATTTGCGAAATTGAGCCTGTCTAGTAGGAACAAGTGAGAGAAAAAGGGATGGGTGTCGGGGGAGACTTTCACAAAGCTTCAAATTTGAATAAATCAACACCACAAACGGATGGGTGTCGGGCGAGACTCGCTTAATAACTTTGAGGTCAAAGGTTTGAATCCTCCCATATGCTAGTGTTTGTGGATGGGTATTACAAATTTACAACGGATGGTAGGTGTGTGTGATTTTATTAAAGCGCAACCCTACCAGCACACGCTTCTTTATAAAATTTAAAAACTTGAACTAGATCACGTTTAAAAGTAACACGTAAGAAATACATTACAAGCATAACTTAGGAGGCCTGCTTGTAATAGAAAATAAAAATATACACAAGGAAGATATAGTGGGTTCTACAACCGGGGCCCCCCCCGTTATCATTATCATTATCATTACCCCATTGCCTCAAAGAGGCTCCCGCAAGAAGCGGGGTAAGGGGGGGTCGGGTGTACGCAACCTTACCCCTGCAATTGCAGAGAGGTTGTTTCCAATTGACCCAAAAGCGATAACGGGACGACCATCTTTGACTTCATGGAAAGGAAGCAAATAGGTTTTAAGAGCCATTTTGATTTAGTCCCCCCCAAAAAAAAAGTTGTTATGGAACAAAAGCAAAAAAGTCTAATCAAGAACTTTAGTCTTGGTACTTTTGGCATGTTCCTTCTGGTATTTGAGTTGTCCACCACTCTCTTATGGTGTGCTTCTTTGAGGTTGCTAGTTCAAGCTTCTGCTCTCTTGCGATTTGCACATTTTGTAGTAGTTGCCTATGCGAACTTCTAACTTTGGTATGTATGGCGTTGACTTCCAACTCTATTTGACGACTGGGTTCAGCTTCAATACTTGTGATTTAATCTTTCCTTTTCCCCACCACTGCAACACATCTGCAACTTCATGCTCTACCAATCTTCTAATTTGAGACCAAACTTCTTGTGCACTCTTGAGTTTTTTCGTGCTTTGGAGCTTCTAACTTCATGTAGCTTGGCGTGTTCAAAATGTTCTGTAAGGAATATGAGAATAGGTCTTTAACCATGCCCAAAGTTTGAGCTGGTCTACCGCTTTGTTACAAGGATTCCTCTATTGTAGCACATTCTAATTCAGTCCTTTATGAAGGACTTTGTGTTTTTTTGCTTTTCAGATAAGGTTATTTGTTTGTTAGTAGTGAGGAGACAGAGTAGGACTTCCATATTTCCCTCTTACTATGGAGTATGGAGGAATTCCATGTTGATATCAAACTAAAGTCAATTGTTATGATATCTAGCTTCCCTTAATCCCTTTCCATTCTCCTTGCCTCATACTTATACTCTTTGCAACACCTTGTATCGGTTTGTTGGTGGAGTTAACTGCCTTGATGTTTCCTCCTTCGAGATTCAACCTAAGTCTTCTTACCTCCGATTTGGTGATAAAGTTATCTGTCCTGACCAAATTCACCAACATAGCACAAAAAACAAGGACGGGTACGAAAAACTACCTGATACTCCTTTCATTCCCTACTACATGTCTTGTGTGTTTTATCTTGCATGACATGCCCAAGCCTCGGAAGTTGTGTGATTGACTCAGCATTATATATACTTGATTGGGAAATCTCAAAGTCTTTTTCTGCCTAACAGCTCCCTGTTATCCTATGCTCGAAGGAGAGGATGATGTCAGAATTGGTGGAAGGGTTGTTAATATCAAGTTGGGAAACTATGTCAAGAAGATAGGCATTGATGGATCCCCTAAAGCAATTAAGGAGGCAATTAGAGCTTCCTTTGGTCTAAGAACTAGAAGGGTATTCTGGTTAGAGGATGATGAAGGAATTGTACGATGCATTGACAGGGATATGCCTTTAAGGGACTATACTCTCAACTTAGATAAAGGTAATAATATATGTGAGCTTGATTGAGTTTAAGAAGTACAATAATATGTTTTAATGCCATAGTCGAATCATATATGTTTATTGCAGGATTGACCATAAGAATCAATCTCTGTGAAGCTGCGAATGAGATACCAGTTCATGTTGAGGAGAAAACATTTTACATGGAAGCTGATTTCTATGATTTCCTCCACCGCCATGGCTTTGTTTCGCTCAGAGACTTGAACTGTCAGAAAAATGTAGACTCTATTGGTGATCTCCATTCCGGCGAACTCTACCAGGGGTTGCAAGCTCCAGCTAGCTGAAACAGAACAAGCATTCTAGTTTATTTTCTGCTTTCAAGGTTTCAATAAAAAGTTTGGTCTAGTTCTATTTGTATTTTAGGATGTTATACTTACAAAAAACTTATGTCTTGGATAATAGAAATTGTGATTTTGTTTTAACTCTGTTTTTAAGACGTAGCTGTACATTAGCATAGTTTTTCTAGTAGTTTCCTGTGCGATCTGACTAATCCTCAACTGAATCCCGTT

mRNA sequence

ATGGCATCTACATCTTCAGGAAGTAATGATCCGTTTGCTGTCAACCTTGAGAGGAATTCCAATCACGGTGAACACTTGTTTGGTGTTCATGAGACTGATTTTCTTGCAGCTAATGAAGTCTCTGCTTTGAATTGGAAAGCTCCCTGTTATCCTATGCTCGAAGGAGAGGATGATGTCAGAATTGGTGGAAGGGTTGTTAATATCAAGTTGGGAAACTATGTCAAGAAGATAGGCATTGATGGATCCCCTAAAGCAATTAAGGAGGCAATTAGAGCTTCCTTTGGTCTAAGAACTAGAAGGGTATTCTGGTTAGAGGATGATGAAGGAATTGTACGATGCATTGACAGGGATATGCCTTTAAGGGACTATACTCTCAACTTAGATAAAGGATTGACCATAAGAATCAATCTCTGTGAAGCTGCGAATGAGATACCAGTTCATGTTGAGGAGAAAACATTTTACATGGAAGCTGATTTCTATGATTTCCTCCACCGCCATGGCTTTGTTTCGCTCAGAGACTTGAACTGTCAGAAAAATGTAGACTCTATTGGTGATCTCCATTCCGGCGAACTCTACCAGGGGTTGCAAGCTCCAGCTAGCTGAAACAGAACAAGCATTCTAGTTTATTTTCTGCTTTCAAGGTTTCAATAAAAAGTTTGGTCTAGTTCTATTTGTATTTTAGGATGTTATACTTACAAAAAACTTATGTCTTGGATAATAGAAATTGTGATTTTGTTTTAACTCTGTTTTTAAGACGTAGCTGTACATTAGCATAGTTTTTCTAGTAGTTTCCTGTGCGATCTGACTAATCCTCAACTGAATCCCGTT

Coding sequence (CDS)

ATGGCATCTACATCTTCAGGAAGTAATGATCCGTTTGCTGTCAACCTTGAGAGGAATTCCAATCACGGTGAACACTTGTTTGGTGTTCATGAGACTGATTTTCTTGCAGCTAATGAAGTCTCTGCTTTGAATTGGAAAGCTCCCTGTTATCCTATGCTCGAAGGAGAGGATGATGTCAGAATTGGTGGAAGGGTTGTTAATATCAAGTTGGGAAACTATGTCAAGAAGATAGGCATTGATGGATCCCCTAAAGCAATTAAGGAGGCAATTAGAGCTTCCTTTGGTCTAAGAACTAGAAGGGTATTCTGGTTAGAGGATGATGAAGGAATTGTACGATGCATTGACAGGGATATGCCTTTAAGGGACTATACTCTCAACTTAGATAAAGGATTGACCATAAGAATCAATCTCTGTGAAGCTGCGAATGAGATACCAGTTCATGTTGAGGAGAAAACATTTTACATGGAAGCTGATTTCTATGATTTCCTCCACCGCCATGGCTTTGTTTCGCTCAGAGACTTGAACTGTCAGAAAAATGTAGACTCTATTGGTGATCTCCATTCCGGCGAACTCTACCAGGGGTTGCAAGCTCCAGCTAGCTGA

Protein sequence

MASTSSGSNDPFAVNLERNSNHGEHLFGVHETDFLAANEVSALNWKAPCYPMLEGEDDVRIGGRVVNIKLGNYVKKIGIDGSPKAIKEAIRASFGLRTRRVFWLEDDEGIVRCIDRDMPLRDYTLNLDKGLTIRINLCEAANEIPVHVEEKTFYMEADFYDFLHRHGFVSLRDLNCQKNVDSIGDLHSGELYQGLQAPAS
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo24686.1Spo24686.1mRNA


Homology
[Close]
BLAST of Spo24686.1 vs. NCBI nr
Match: gi|902177257|gb|KNA08924.1| (hypothetical protein SOVF_158240 [Spinacia oleracea])

HSP 1 Score: 310.8 bits (795), Expect = 1.700e-81
Identity = 148/149 (99.33%), Postives = 149/149 (100.00%), Query Frame = 1 

		  

Query: 52  MLEGEDDVRIGGRVVNIKLGNYVKKIGIDGSPKAIKEAIRASFGLRTRRVFWLEDDEGIV 111
           MLEGEDDVRIGGRVVNIKLGNYVKKIGIDGSPKAIKEAIRASFGLRTRRVFWLEDDEGIV
Sbjct: 1   MLEGEDDVRIGGRVVNIKLGNYVKKIGIDGSPKAIKEAIRASFGLRTRRVFWLEDDEGIV 60

Query: 112 RCIDRDMPLRDYTLNLDKGLTIRINLCEAANEIPVHVEEKTFYMEADFYDFLHRHGFVSL 171
           RCIDRDMPLRDYTLNLDKGLTIRINLCEAANEIPVHVEEKTFYMEADFYDFLHRHGFV+L
Sbjct: 61  RCIDRDMPLRDYTLNLDKGLTIRINLCEAANEIPVHVEEKTFYMEADFYDFLHRHGFVAL 120

Query: 172 RDLNCQKNVDSIGDLHSGELYQGLQAPAS 201
           RDLNCQKNVDSIGDLHSGELYQGLQAPAS
Sbjct: 121 RDLNCQKNVDSIGDLHSGELYQGLQAPAS 149
[Close]
BLAST of Spo24686.1 vs. NCBI nr
Match: gi|641863350|gb|KDO82036.1| (hypothetical protein CISIN_1g015940mg [Citrus sinensis])

HSP 1 Score: 196.1 bits (497), Expect = 6.000e-47
Identity = 88/182 (48.35%), Postives = 130/182 (71.43%), Query Frame = 1 

		  

Query: 14  VNLERNSNHGEHLFGVHETDFLAANEVSALNWKAPCYPMLEGEDDVRIGGRVVNIKLGNY 73
           +NLER  +H  H   +   D +AA  V   NW+ P  P   G +    GG+V+++K G+Y
Sbjct: 215 LNLERRLDHDGHPLAITTADAVAAAGVPPWNWRDP--PPGNGGEGQSFGGKVISVKCGDY 274

Query: 74  VKKIGIDGSPKAIKEAIRASFGLRTRRVFWLEDDEGIVRCIDRDMPLRDYTLNLDKGLTI 133
            ++IGIDG+P AIKEAI+++FG+RT+R FWLED++ IVRCIDRDMP+ +YTL+LD+GLTI
Sbjct: 275 TRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTI 334

Query: 134 RINLCEAANEIPVHVEEKTFYMEADFYDFLHRHGFVSLRDLNCQKNVDSIGDLHSGELYQ 193
           ++ L + ++ I VH E+KTFY E D+ +FL RHG+  LR+ +  +NVD++ DL  G +Y+
Sbjct: 335 KVCLYDESDHISVHTEDKTFYTEEDYREFLARHGWTCLREFDGYRNVDNMDDLRPGAMYR 394

Query: 194 GL 196
           G+
Sbjct: 395 GV 394
[Close]
BLAST of Spo24686.1 vs. NCBI nr
Match: gi|567891207|ref|XP_006438124.1| (hypothetical protein CICLE_v10031750mg [Citrus clementina])

HSP 1 Score: 196.1 bits (497), Expect = 6.000e-47
Identity = 88/182 (48.35%), Postives = 130/182 (71.43%), Query Frame = 1 

		  

Query: 14  VNLERNSNHGEHLFGVHETDFLAANEVSALNWKAPCYPMLEGEDDVRIGGRVVNIKLGNY 73
           +NLER  +H  H   +   D +AA  V   NW+ P  P   G +    GG+V+++K G+Y
Sbjct: 215 LNLERRLDHDGHPLAITTADAVAAAGVPPWNWRDP--PPGNGGEGQSFGGKVISVKCGDY 274

Query: 74  VKKIGIDGSPKAIKEAIRASFGLRTRRVFWLEDDEGIVRCIDRDMPLRDYTLNLDKGLTI 133
            ++IGIDG+P AIKEAI+++FG+RT+R FWLED++ IVRCIDRDMP+ +YTL+LD+GLTI
Sbjct: 275 TRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTI 334

Query: 134 RINLCEAANEIPVHVEEKTFYMEADFYDFLHRHGFVSLRDLNCQKNVDSIGDLHSGELYQ 193
           ++ L + ++ I VH E+KTFY E D+ +FL RHG+  LR+ +  +NVD++ DL  G +Y+
Sbjct: 335 KVCLYDESDHISVHTEDKTFYTEEDYREFLARHGWTCLREFDGYRNVDNMDDLRPGAMYR 394

Query: 194 GL 196
           G+
Sbjct: 395 GV 394
[Close]
BLAST of Spo24686.1 vs. NCBI nr
Match: gi|769797030|ref|XP_011627954.1| (PREDICTED: trihelix transcription factor GT-1 isoform X2 [Amborella trichopoda])

HSP 1 Score: 194.1 bits (492), Expect = 2.300e-46
Identity = 88/184 (47.83%), Postives = 130/184 (70.65%), Query Frame = 1 

		  

Query: 13  AVNLERNSNHGEHLFGVHETDFLAANEVSALNWKAPCYPMLEGEDD---VRIGGRVVNIK 72
           ++NLER  +H +H   +   D +AAN V   NW+     + E  D+     + GRV+ +K
Sbjct: 225 SLNLERRLDHDDHPLSIAAADAVAANGVPHWNWR----DVTENGDNHHPANVVGRVILVK 284

Query: 73  LGNYVKKIGIDGSPKAIKEAIRASFGLRTRRVFWLEDDEGIVRCIDRDMPLRDYTLNLDK 132
            G+Y +KIGIDG+ +AIKEAI+++FGLRT+R FWLED+EG+VR +DRDMPL  Y L+LD+
Sbjct: 285 FGDYTRKIGIDGTAEAIKEAIKSAFGLRTKRAFWLEDEEGVVRSLDRDMPLGTYVLHLDQ 344

Query: 133 GLTIRINLCEAANEIPVHVEEKTFYMEADFYDFLHRHGFVSLRDLNCQKNVDSIGDLHSG 192
           G+TI++ LC+ ++ + VH EEKT Y E DF+DFL R G++ L+DLN  + ++S+ +LH G
Sbjct: 345 GVTIKVCLCDNSDRMTVHTEEKTLYTEDDFHDFLSRRGWIGLKDLNDYRTIESLDELHPG 404

Query: 193 ELYQ 194
            +YQ
Sbjct: 405 AVYQ 404
[Close]
BLAST of Spo24686.1 vs. NCBI nr
Match: gi|586772294|ref|XP_006856891.1| (PREDICTED: trihelix transcription factor GT-1 isoform X1 [Amborella trichopoda])

HSP 1 Score: 194.1 bits (492), Expect = 2.300e-46
Identity = 88/184 (47.83%), Postives = 130/184 (70.65%), Query Frame = 1 

		  

Query: 13  AVNLERNSNHGEHLFGVHETDFLAANEVSALNWKAPCYPMLEGEDD---VRIGGRVVNIK 72
           ++NLER  +H +H   +   D +AAN V   NW+     + E  D+     + GRV+ +K
Sbjct: 238 SLNLERRLDHDDHPLSIAAADAVAANGVPHWNWR----DVTENGDNHHPANVVGRVILVK 297

Query: 73  LGNYVKKIGIDGSPKAIKEAIRASFGLRTRRVFWLEDDEGIVRCIDRDMPLRDYTLNLDK 132
            G+Y +KIGIDG+ +AIKEAI+++FGLRT+R FWLED+EG+VR +DRDMPL  Y L+LD+
Sbjct: 298 FGDYTRKIGIDGTAEAIKEAIKSAFGLRTKRAFWLEDEEGVVRSLDRDMPLGTYVLHLDQ 357

Query: 133 GLTIRINLCEAANEIPVHVEEKTFYMEADFYDFLHRHGFVSLRDLNCQKNVDSIGDLHSG 192
           G+TI++ LC+ ++ + VH EEKT Y E DF+DFL R G++ L+DLN  + ++S+ +LH G
Sbjct: 358 GVTIKVCLCDNSDRMTVHTEEKTLYTEDDFHDFLSRRGWIGLKDLNDYRTIESLDELHPG 417

Query: 193 ELYQ 194
            +YQ
Sbjct: 418 AVYQ 417
[Close]
BLAST of Spo24686.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QNT5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_158240 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 1.200e-81
Identity = 148/149 (99.33%), Postives = 149/149 (100.00%), Query Frame = 1 

		  

Query: 52  MLEGEDDVRIGGRVVNIKLGNYVKKIGIDGSPKAIKEAIRASFGLRTRRVFWLEDDEGIV 111
           MLEGEDDVRIGGRVVNIKLGNYVKKIGIDGSPKAIKEAIRASFGLRTRRVFWLEDDEGIV
Sbjct: 1   MLEGEDDVRIGGRVVNIKLGNYVKKIGIDGSPKAIKEAIRASFGLRTRRVFWLEDDEGIV 60

Query: 112 RCIDRDMPLRDYTLNLDKGLTIRINLCEAANEIPVHVEEKTFYMEADFYDFLHRHGFVSL 171
           RCIDRDMPLRDYTLNLDKGLTIRINLCEAANEIPVHVEEKTFYMEADFYDFLHRHGFV+L
Sbjct: 61  RCIDRDMPLRDYTLNLDKGLTIRINLCEAANEIPVHVEEKTFYMEADFYDFLHRHGFVAL 120

Query: 172 RDLNCQKNVDSIGDLHSGELYQGLQAPAS 201
           RDLNCQKNVDSIGDLHSGELYQGLQAPAS
Sbjct: 121 RDLNCQKNVDSIGDLHSGELYQGLQAPAS 149
[Close]
BLAST of Spo24686.1 vs. UniProtKB/TrEMBL
Match: A0A067H397_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015940mg PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.200e-47
Identity = 88/182 (48.35%), Postives = 130/182 (71.43%), Query Frame = 1 

		  

Query: 14  VNLERNSNHGEHLFGVHETDFLAANEVSALNWKAPCYPMLEGEDDVRIGGRVVNIKLGNY 73
           +NLER  +H  H   +   D +AA  V   NW+ P  P   G +    GG+V+++K G+Y
Sbjct: 215 LNLERRLDHDGHPLAITTADAVAAAGVPPWNWRDP--PPGNGGEGQSFGGKVISVKCGDY 274

Query: 74  VKKIGIDGSPKAIKEAIRASFGLRTRRVFWLEDDEGIVRCIDRDMPLRDYTLNLDKGLTI 133
            ++IGIDG+P AIKEAI+++FG+RT+R FWLED++ IVRCIDRDMP+ +YTL+LD+GLTI
Sbjct: 275 TRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTI 334

Query: 134 RINLCEAANEIPVHVEEKTFYMEADFYDFLHRHGFVSLRDLNCQKNVDSIGDLHSGELYQ 193
           ++ L + ++ I VH E+KTFY E D+ +FL RHG+  LR+ +  +NVD++ DL  G +Y+
Sbjct: 335 KVCLYDESDHISVHTEDKTFYTEEDYREFLARHGWTCLREFDGYRNVDNMDDLRPGAMYR 394

Query: 194 GL 196
           G+
Sbjct: 395 GV 394
[Close]
BLAST of Spo24686.1 vs. UniProtKB/TrEMBL
Match: V4VFT0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031750mg PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.200e-47
Identity = 88/182 (48.35%), Postives = 130/182 (71.43%), Query Frame = 1 

		  

Query: 14  VNLERNSNHGEHLFGVHETDFLAANEVSALNWKAPCYPMLEGEDDVRIGGRVVNIKLGNY 73
           +NLER  +H  H   +   D +AA  V   NW+ P  P   G +    GG+V+++K G+Y
Sbjct: 215 LNLERRLDHDGHPLAITTADAVAAAGVPPWNWRDP--PPGNGGEGQSFGGKVISVKCGDY 274

Query: 74  VKKIGIDGSPKAIKEAIRASFGLRTRRVFWLEDDEGIVRCIDRDMPLRDYTLNLDKGLTI 133
            ++IGIDG+P AIKEAI+++FG+RT+R FWLED++ IVRCIDRDMP+ +YTL+LD+GLTI
Sbjct: 275 TRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTI 334

Query: 134 RINLCEAANEIPVHVEEKTFYMEADFYDFLHRHGFVSLRDLNCQKNVDSIGDLHSGELYQ 193
           ++ L + ++ I VH E+KTFY E D+ +FL RHG+  LR+ +  +NVD++ DL  G +Y+
Sbjct: 335 KVCLYDESDHISVHTEDKTFYTEEDYREFLARHGWTCLREFDGYRNVDNMDDLRPGAMYR 394

Query: 194 GL 196
           G+
Sbjct: 395 GV 394
[Close]
BLAST of Spo24686.1 vs. UniProtKB/TrEMBL
Match: U5DD69_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00055p00209070 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.600e-46
Identity = 88/184 (47.83%), Postives = 130/184 (70.65%), Query Frame = 1 

		  

Query: 13  AVNLERNSNHGEHLFGVHETDFLAANEVSALNWKAPCYPMLEGEDD---VRIGGRVVNIK 72
           ++NLER  +H +H   +   D +AAN V   NW+     + E  D+     + GRV+ +K
Sbjct: 238 SLNLERRLDHDDHPLSIAAADAVAANGVPHWNWR----DVTENGDNHHPANVVGRVILVK 297

Query: 73  LGNYVKKIGIDGSPKAIKEAIRASFGLRTRRVFWLEDDEGIVRCIDRDMPLRDYTLNLDK 132
            G+Y +KIGIDG+ +AIKEAI+++FGLRT+R FWLED+EG+VR +DRDMPL  Y L+LD+
Sbjct: 298 FGDYTRKIGIDGTAEAIKEAIKSAFGLRTKRAFWLEDEEGVVRSLDRDMPLGTYVLHLDQ 357

Query: 133 GLTIRINLCEAANEIPVHVEEKTFYMEADFYDFLHRHGFVSLRDLNCQKNVDSIGDLHSG 192
           G+TI++ LC+ ++ + VH EEKT Y E DF+DFL R G++ L+DLN  + ++S+ +LH G
Sbjct: 358 GVTIKVCLCDNSDRMTVHTEEKTLYTEDDFHDFLSRRGWIGLKDLNDYRTIESLDELHPG 417

Query: 193 ELYQ 194
            +YQ
Sbjct: 418 AVYQ 417
[Close]
BLAST of Spo24686.1 vs. UniProtKB/TrEMBL
Match: A0A067H2U0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015940mg PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.000e-45
Identity = 88/185 (47.57%), Postives = 130/185 (70.27%), Query Frame = 1 

		  

Query: 14  VNLERNSNHGEHLFGVHETDFLAANEVSALNWKAPCYPMLEGE---DDVRIGGRVVNIKL 73
           +NLER  +H  H   +   D +AA  V   NW+ P  P   G    +    GG+V+++K 
Sbjct: 215 LNLERRLDHDGHPLAITTADAVAAAGVPPWNWRDP--PPGNGNLCGEGQSFGGKVISVKC 274

Query: 74  GNYVKKIGIDGSPKAIKEAIRASFGLRTRRVFWLEDDEGIVRCIDRDMPLRDYTLNLDKG 133
           G+Y ++IGIDG+P AIKEAI+++FG+RT+R FWLED++ IVRCIDRDMP+ +YTL+LD+G
Sbjct: 275 GDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEG 334

Query: 134 LTIRINLCEAANEIPVHVEEKTFYMEADFYDFLHRHGFVSLRDLNCQKNVDSIGDLHSGE 193
           LTI++ L + ++ I VH E+KTFY E D+ +FL RHG+  LR+ +  +NVD++ DL  G 
Sbjct: 335 LTIKVCLYDESDHISVHTEDKTFYTEEDYREFLARHGWTCLREFDGYRNVDNMDDLRPGA 394

Query: 194 LYQGL 196
           +Y+G+
Sbjct: 395 MYRGV 397
[Close]
BLAST of Spo24686.1 vs. ExPASy Swiss-Prot
Match: TGT1_ARATH (Trihelix transcription factor GT-1 OS=Arabidopsis thaliana GN=GT-1 PE=1 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 6.900e-43
Identity = 86/187 (45.99%), Postives = 127/187 (67.91%), Query Frame = 1 

		  

Query: 13  AVNLERNSNHGEHLFGVHET-DFLAANEVSALNWKAPCYPMLEGEDD--VRIGGRVVNIK 72
           A+NLER  +H  H   +    D +AAN V+  NW+        G+D      GGRV+ +K
Sbjct: 224 ALNLERRLDHDGHPLAITTAVDAVAANGVTPWNWRETPG---NGDDSHGQPFGGRVITVK 283

Query: 73  LGNYVKKIGIDGSPKAIKEAIRASFGLRTRRVFWLEDDEGIVRCIDRDMPLRDYTLNLDK 132
            G+Y ++IG+DGS +AIKE IR++FGLRTRR FWLED++ I+RC+DRDMPL +Y L LD 
Sbjct: 284 FGDYTRRIGVDGSAEAIKEVIRSAFGLRTRRAFWLEDEDQIIRCLDRDMPLGNYLLRLDD 343

Query: 133 GLTIRINLCEAANEIPVHVEEKTFYMEADFYDFLHRHGFVSLRDLNCQKNVDSIGDLHSG 192
           GL IR+   + +N++PVH EEK FY E D+ +FL R G+ SL+ ++  +N++++ DL  G
Sbjct: 344 GLAIRVCHYDESNQLPVHSEEKIFYTEEDYREFLARQGWSSLQ-VDGFRNIENMDDLQPG 403

Query: 193 ELYQGLQ 197
            +Y+G++
Sbjct: 404 AVYRGVR 406
[Close]
BLAST of Spo24686.1 vs. ExPASy Swiss-Prot
Match: TGT4_ARATH (Trihelix transcription factor GT-4 OS=Arabidopsis thaliana GN=GT-4 PE=2 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.900e-40
Identity = 79/193 (40.93%), Postives = 125/193 (64.77%), Query Frame = 1 

		  

Query: 4   TSSGSNDPFAVNLERNSNHGEHLFGVHETDFLAANEVSALNWKAPCYPMLEGEDDVRIGG 63
           TS  +N    +NLE   +H      +   D + AN V   NW+      ++G+      G
Sbjct: 184 TSVEANGRPTLNLETELDHDGLPLPI-AADPITANGVPPWNWRDTPGNGVDGQP---FAG 243

Query: 64  RVVNIKLGNYVKKIGIDGSPKAIKEAIRASFGLRTRRVFWLEDDEGIVRCIDRDMPLRDY 123
           R++ +K G+Y +++GIDG+ +AIKEAIR++F LRTRR FWLED+E ++R +DRDMPL +Y
Sbjct: 244 RIITVKFGDYTRRVGIDGTAEAIKEAIRSAFRLRTRRAFWLEDEEQVIRSLDRDMPLGNY 303

Query: 124 TLNLDKGLTIRINLCEAANEIPVHVEEKTFYMEADFYDFLHRHGFVSLRDLNCQKNVDSI 183
            L +D+G+ +R+   + ++ +PVH EEK FY E D+ DFL R G+  LR+ +  +N+D++
Sbjct: 304 ILRIDEGIAVRVCHYDESDPLPVHQEEKIFYTEEDYRDFLARRGWTCLREFDAFQNIDNM 363

Query: 184 GDLHSGELYQGLQ 197
            +L SG LY+G++
Sbjct: 364 DELQSGRLYRGMR 372
[Close]
BLAST of Spo24686.1 vs. TAIR (Arabidopsis)
Match: AT1G13450.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 175.3 bits (443), Expect = 3.900e-44
Identity = 86/187 (45.99%), Postives = 127/187 (67.91%), Query Frame = 1 

		  

Query: 13  AVNLERNSNHGEHLFGVHET-DFLAANEVSALNWKAPCYPMLEGEDD--VRIGGRVVNIK 72
           A+NLER  +H  H   +    D +AAN V+  NW+        G+D      GGRV+ +K
Sbjct: 224 ALNLERRLDHDGHPLAITTAVDAVAANGVTPWNWRETPG---NGDDSHGQPFGGRVITVK 283

Query: 73  LGNYVKKIGIDGSPKAIKEAIRASFGLRTRRVFWLEDDEGIVRCIDRDMPLRDYTLNLDK 132
            G+Y ++IG+DGS +AIKE IR++FGLRTRR FWLED++ I+RC+DRDMPL +Y L LD 
Sbjct: 284 FGDYTRRIGVDGSAEAIKEVIRSAFGLRTRRAFWLEDEDQIIRCLDRDMPLGNYLLRLDD 343

Query: 133 GLTIRINLCEAANEIPVHVEEKTFYMEADFYDFLHRHGFVSLRDLNCQKNVDSIGDLHSG 192
           GL IR+   + +N++PVH EEK FY E D+ +FL R G+ SL+ ++  +N++++ DL  G
Sbjct: 344 GLAIRVCHYDESNQLPVHSEEKIFYTEEDYREFLARQGWSSLQ-VDGFRNIENMDDLQPG 403

Query: 193 ELYQGLQ 197
            +Y+G++
Sbjct: 404 AVYRGVR 406
[Close]
BLAST of Spo24686.1 vs. TAIR (Arabidopsis)
Match: AT3G25990.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 167.2 bits (422), Expect = 1.100e-41
Identity = 79/193 (40.93%), Postives = 125/193 (64.77%), Query Frame = 1 

		  

Query: 4   TSSGSNDPFAVNLERNSNHGEHLFGVHETDFLAANEVSALNWKAPCYPMLEGEDDVRIGG 63
           TS  +N    +NLE   +H      +   D + AN V   NW+      ++G+      G
Sbjct: 184 TSVEANGRPTLNLETELDHDGLPLPI-AADPITANGVPPWNWRDTPGNGVDGQP---FAG 243

Query: 64  RVVNIKLGNYVKKIGIDGSPKAIKEAIRASFGLRTRRVFWLEDDEGIVRCIDRDMPLRDY 123
           R++ +K G+Y +++GIDG+ +AIKEAIR++F LRTRR FWLED+E ++R +DRDMPL +Y
Sbjct: 244 RIITVKFGDYTRRVGIDGTAEAIKEAIRSAFRLRTRRAFWLEDEEQVIRSLDRDMPLGNY 303

Query: 124 TLNLDKGLTIRINLCEAANEIPVHVEEKTFYMEADFYDFLHRHGFVSLRDLNCQKNVDSI 183
            L +D+G+ +R+   + ++ +PVH EEK FY E D+ DFL R G+  LR+ +  +N+D++
Sbjct: 304 ILRIDEGIAVRVCHYDESDPLPVHQEEKIFYTEEDYRDFLARRGWTCLREFDAFQNIDNM 363

Query: 184 GDLHSGELYQGLQ 197
            +L SG LY+G++
Sbjct: 364 DELQSGRLYRGMR 372
The following BLAST results are available for this feature:
BLAST of Spo24686.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902177257|gb|KNA08924.1|1.7e-8199.3hypothetical protein SOVF_1582... [more]
gi|641863350|gb|KDO82036.1|6.0e-4748.3hypothetical protein CISIN_1g0... [more]
gi|567891207|ref|XP_006438124.1|6.0e-4748.3hypothetical protein CICLE_v10... [more]
gi|769797030|ref|XP_011627954.1|2.3e-4647.8PREDICTED: trihelix transcript... [more]
gi|586772294|ref|XP_006856891.1|2.3e-4647.8PREDICTED: trihelix transcript... [more]
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BLAST of Spo24686.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QNT5_SPIOL1.2e-8199.3Uncharacterized protein OS=Spi... [more]
A0A067H397_CITSI4.2e-4748.3Uncharacterized protein OS=Cit... [more]
V4VFT0_9ROSI4.2e-4748.3Uncharacterized protein OS=Cit... [more]
U5DD69_AMBTC1.6e-4647.8Uncharacterized protein OS=Amb... [more]
A0A067H2U0_CITSI1.0e-4547.5Uncharacterized protein OS=Cit... [more]
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BLAST of Spo24686.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TGT1_ARATH6.9e-4345.9Trihelix transcription factor ... [more]
TGT4_ARATH1.9e-4040.9Trihelix transcription factor ... [more]
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BLAST of Spo24686.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT1G13450.13.9e-4445.9Homeodomain-like superfamily p... [more]
AT3G25990.11.1e-4140.9Homeodomain-like superfamily p... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027775C2H2- zinc finger protein familyPANTHERPTHR10032ZINC FINGER PROTEIN WITH KRAB AND SCAN DOMAINScoord: 13..186
score: 2.6
NoneNo IPR availablePANTHERPTHR10032:SF222TRIHELIX TRANSCRIPTION FACTOR GT-1-RELATEDcoord: 13..186
score: 2.6

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009718 anthocyanin-containing compound biosynthetic process
biological_process GO:0089722 phosphoenolpyruvate transmembrane transport
biological_process GO:0015713 phosphoglycerate transmembrane transport
biological_process GO:0006863 purine nucleobase transport
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0031969 chloroplast membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus
molecular_function GO:0015121 phosphoenolpyruvate:phosphate antiporter activity
molecular_function GO:0015120 phosphoglycerate transmembrane transporter activity
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016491 oxidoreductase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo239930.67Barchart | Table
Spo069110.66Barchart | Table
Spo166200.65Barchart | Table
Spo205180.65Barchart | Table
Spo265570.65Barchart | Table