Spo24707 (gene)

Overview
NameSpo24707
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionPhotosystem I P700 chlorophyll a apoprotein A1 (1.97.1.12) (PSI-A) (PsaA)
Locationchr4 : 55156073 .. 55156745 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTATTCGTTCGCCGGAACCAGAAGTAAAAATTTTGGTAGATAGGGATCCCGTAAAAACTTCGTTTGAGGCATGGGCCAAACCTGGTCATTTTTCAAGAACAATAGCTAAGGGCCCTGAAACTACTACATGGATCTGGAACCTACATGCTGATGCTCACGATTTCGATAGCCATACCAGCGATTTGGAGGAGATCTCCCGAAAAATTTTTAGTGCCCATTTCGGTCAACTCTCCATCATCTTTCTTTGGCTGAGTGGTATGTATTTCCACGGTGCCCGTTTTTCCAATTATGAAGCATGGCTAAGCGATCCTACTCACATTGGACCTAGTNTTTTCCAATTATGAAGCATGGCTAAGCGATCCTACTCACATTGGACCTAGTGCCCAAGTAGTTCAACCGATATACAAAGAGTTCATTGAATAAAGATATTCCTGAACAGACATAATTGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCGGACGGAGATTGGCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATAACAGGCTGA

mRNA sequence

ATGATTATTCGTTCGCCGGAACCAGAAGTAAAAATTTTGGTAGATAGGGATCCCGTAAAAACTTCGTTTGAGGCATGGGCCAAACCTGGTCATTTTTCAAGAACAATAGCTAAGGGCCCTGAAACTACTACATGGATCTGGAACCTACATGCTGATGCTCACGATTTCGATAGCCATACCAGCGATTTGGAGGAGATCTCCCGAAAAATTTTTAGTGCCCATTTCGGTCAACTCTCCATCATCTTTCTTTGGCTGAGTGCATGGCTAAGCGATCCTACTCACATTGGACCTAGTGCCCAAGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCGGACGGAGATTGGCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATAACAGGCTGA

Coding sequence (CDS)

ATGATTATTCGTTCGCCGGAACCAGAAGTAAAAATTTTGGTAGATAGGGATCCCGTAAAAACTTCGTTTGAGGCATGGGCCAAACCTGGTCATTTTTCAAGAACAATAGCTAAGGGCCCTGAAACTACTACATGGATCTGGAACCTACATGCTGATGCTCACGATTTCGATAGCCATACCAGCGATTTGGAGGAGATCTCCCGAAAAATTTTTAGTGCCCATTTCGGTCAACTCTCCATCATCTTTCTTTGGCTGAGTGCATGGCTAAGCGATCCTACTCACATTGGACCTAGTGCCCAAGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCGGACGGAGATTGGCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATAACAGGCTGA

Protein sequence

MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHTSDLEEISRKIFSAHFGQLSIIFLWLSAWLSDPTHIGPSAQASQKVTEACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo24707.1Spo24707.1mRNA


Homology
[Close]
BLAST of Spo24707.1 vs. NCBI nr
Match: gi|11497525|ref|NP_054933.1| (photosystem I P700 chlorophyll a apoprotein A1 [Spinacia oleracea])

HSP 1 Score: 204.9 bits (520), Expect = 1.100e-49
Identity = 100/113 (88.50%), Postives = 100/113 (88.50%), Query Frame = 1 

		  

Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRKIFSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKIFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113
[Close]
BLAST of Spo24707.1 vs. NCBI nr
Match: gi|167391805|ref|YP_001671683.1| (photosystem I P700 chlorophyll a apoprotein A1 [Carica papaya])

HSP 1 Score: 203.0 bits (515), Expect = 4.100e-49
Identity = 97/113 (85.84%), Postives = 100/113 (88.50%), Query Frame = 1 

		  

Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDP+KTSFEAWAKPGHFSRTIAKGP+TTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPIKTSFEAWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRK+FSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113
[Close]
BLAST of Spo24707.1 vs. NCBI nr
Match: gi|910354317|ref|YP_009160802.1| (photosystem I P700 apoprotein A1 (chloroplast) [Haloxylon ammodendron])

HSP 1 Score: 203.0 bits (515), Expect = 4.100e-49
Identity = 99/113 (87.61%), Postives = 99/113 (87.61%), Query Frame = 1 

		  

Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFE WAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEEWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRKIFSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKIFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113
[Close]
BLAST of Spo24707.1 vs. NCBI nr
Match: gi|567877487|ref|XP_006431326.1| (hypothetical protein CICLE_v10030467mg, partial [Citrus clementina])

HSP 1 Score: 202.6 bits (514), Expect = 5.400e-49
Identity = 98/113 (86.73%), Postives = 99/113 (87.61%), Query Frame = 1 

		  

Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFE WAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEEWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRK+FSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113
[Close]
BLAST of Spo24707.1 vs. NCBI nr
Match: gi|697964761|ref|YP_009059349.1| (photosystem I P700 apoprotein A1 (chloroplast) [Citrus aurantiifolia])

HSP 1 Score: 202.6 bits (514), Expect = 5.400e-49
Identity = 98/113 (86.73%), Postives = 99/113 (87.61%), Query Frame = 1 

		  

Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFE WAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEEWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRK+FSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113
[Close]
BLAST of Spo24707.1 vs. UniProtKB/TrEMBL
Match: B1A935_CARPA (Photosystem I P700 chlorophyll a apoprotein A1 OS=Carica papaya GN=psaA PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.900e-49
Identity = 97/113 (85.84%), Postives = 100/113 (88.50%), Query Frame = 1 

		  

Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDP+KTSFEAWAKPGHFSRTIAKGP+TTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPIKTSFEAWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRK+FSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113
[Close]
BLAST of Spo24707.1 vs. UniProtKB/TrEMBL
Match: A0A0K0K8F4_9CARY (Photosystem I P700 chlorophyll a apoprotein A1 OS=Haloxylon persicum GN=psaA PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.900e-49
Identity = 99/113 (87.61%), Postives = 99/113 (87.61%), Query Frame = 1 

		  

Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFE WAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEEWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRKIFSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKIFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113
[Close]
BLAST of Spo24707.1 vs. UniProtKB/TrEMBL
Match: A0A0K0K874_9CARY (Photosystem I P700 chlorophyll a apoprotein A1 OS=Haloxylon ammodendron GN=psaA PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.900e-49
Identity = 99/113 (87.61%), Postives = 99/113 (87.61%), Query Frame = 1 

		  

Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFE WAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEEWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRKIFSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKIFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113
[Close]
BLAST of Spo24707.1 vs. UniProtKB/TrEMBL
Match: A0A088DBP3_CITAU (Photosystem I P700 chlorophyll a apoprotein A1 OS=Citrus aurantiifolia GN=psaA PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.700e-49
Identity = 98/113 (86.73%), Postives = 99/113 (87.61%), Query Frame = 1 

		  

Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFE WAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEEWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRK+FSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113
[Close]
BLAST of Spo24707.1 vs. UniProtKB/TrEMBL
Match: A0A159BNK1_9ROSI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Citrus platymamma GN=psaA PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.700e-49
Identity = 98/113 (86.73%), Postives = 99/113 (87.61%), Query Frame = 1 

		  

Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFE WAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEEWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRK+FSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113
[Close]
BLAST of Spo24707.1 vs. ExPASy Swiss-Prot
Match: PSAA_SPIOL (Photosystem I P700 chlorophyll a apoprotein A1 OS=Spinacia oleracea GN=psaA PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 6.800e-52
Identity = 100/113 (88.50%), Postives = 100/113 (88.50%), Query Frame = 1 

		  

Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRKIFSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKIFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113
[Close]
BLAST of Spo24707.1 vs. ExPASy Swiss-Prot
Match: PSAA_CITSI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Citrus sinensis GN=psaA PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.400e-51
Identity = 98/113 (86.73%), Postives = 99/113 (87.61%), Query Frame = 1 

		  

Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFE WAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEEWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRK+FSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113
[Close]
BLAST of Spo24707.1 vs. ExPASy Swiss-Prot
Match: PSAA_OENEH (Photosystem I P700 chlorophyll a apoprotein A1 OS=Oenothera elata subsp. hookeri GN=psaA PE=3 SV=2)

HSP 1 Score: 202.2 bits (513), Expect = 4.400e-51
Identity = 97/113 (85.84%), Postives = 99/113 (87.61%), Query Frame = 1 

		  

Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDP+KTSFE WAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPIKTSFEEWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRK+FSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113
[Close]
BLAST of Spo24707.1 vs. ExPASy Swiss-Prot
Match: PSAA_DRIGR (Photosystem I P700 chlorophyll a apoprotein A1 OS=Drimys granadensis GN=psaA PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 7.500e-51
Identity = 97/113 (85.84%), Postives = 99/113 (87.61%), Query Frame = 1 

		  

Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFE WA+PGHFSRTIAKGPETTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRK+FSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113
[Close]
BLAST of Spo24707.1 vs. ExPASy Swiss-Prot
Match: PSAA_COFAR (Photosystem I P700 chlorophyll a apoprotein A1 OS=Coffea arabica GN=psaA PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 7.500e-51
Identity = 97/113 (85.84%), Postives = 99/113 (87.61%), Query Frame = 1 

		  

Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFE WAKPGHFSRTIAKGP+TTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEEWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRK+FSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113
[Close]
BLAST of Spo24707.1 vs. TAIR (Arabidopsis)
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein)

HSP 1 Score: 201.1 bits (510), Expect = 5.500e-52
Identity = 96/113 (84.96%), Postives = 99/113 (87.61%), Query Frame = 1 

		  

Query: 1   MIIRSPEPEVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDP+KTSFE WAKPGHFSRTIAKGP+TTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPIKTSFEEWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKIFSAHFGQLSIIFLWLS-------------AWLSDPTHIGPSAQ 101
           SDLEEISRK+FSAHFGQLSIIFLWLS             AWLSDPTHIGPSAQ
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQ 113
[Close]
BLAST of Spo24707.1 vs. TAIR (Arabidopsis)
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein)

HSP 1 Score: 64.3 bits (155), Expect = 8.000e-11
Identity = 44/106 (41.51%), Postives = 55/106 (51.89%), Query Frame = 1 

		  

Query: 32  FSRTIAKGPETTTWIWNLHADAHDFDSHTSDLEE-ISRKIFSAHFGQLSIIFLWLS---- 91
           FS+ +A+ P TT  IW   A AHDF+SH    EE + + IF++HFGQL+IIFLW S    
Sbjct: 8   FSQGLAQDP-TTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLWTSGNLF 67

Query: 92  ---------AWLSDPTHIGPSAQA------SQKVTEACK--GFLGP 116
                     W+ DP H+ P A A       Q   EA    G LGP
Sbjct: 68  HVAWQGNFETWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGP 112
The following BLAST results are available for this feature:
BLAST of Spo24707.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|11497525|ref|NP_054933.1|1.1e-4988.5photosystem I P700 chlorophyll... [more]
gi|167391805|ref|YP_001671683.1|4.1e-4985.8photosystem I P700 chlorophyll... [more]
gi|910354317|ref|YP_009160802.1|4.1e-4987.6photosystem I P700 apoprotein ... [more]
gi|567877487|ref|XP_006431326.1|5.4e-4986.7hypothetical protein CICLE_v10... [more]
gi|697964761|ref|YP_009059349.1|5.4e-4986.7photosystem I P700 apoprotein ... [more]
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BLAST of Spo24707.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
B1A935_CARPA2.9e-4985.8Photosystem I P700 chlorophyll... [more]
A0A0K0K8F4_9CARY2.9e-4987.6Photosystem I P700 chlorophyll... [more]
A0A0K0K874_9CARY2.9e-4987.6Photosystem I P700 chlorophyll... [more]
A0A088DBP3_CITAU3.7e-4986.7Photosystem I P700 chlorophyll... [more]
A0A159BNK1_9ROSI3.7e-4986.7Photosystem I P700 chlorophyll... [more]
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BLAST of Spo24707.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSAA_SPIOL6.8e-5288.5Photosystem I P700 chlorophyll... [more]
PSAA_CITSI3.4e-5186.7Photosystem I P700 chlorophyll... [more]
PSAA_OENEH4.4e-5185.8Photosystem I P700 chlorophyll... [more]
PSAA_DRIGR7.5e-5185.8Photosystem I P700 chlorophyll... [more]
PSAA_COFAR7.5e-5185.8Photosystem I P700 chlorophyll... [more]
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BLAST of Spo24707.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
ATCG00350.15.5e-5284.9Photosystem I, PsaA/PsaB prote... [more]
ATCG00340.18.0e-1141.5Photosystem I, PsaA/PsaB prote... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001280Photosystem I PsaA/PsaBGENE3D1.20.1130.10coord: 3..101
score: 1.6
IPR001280Photosystem I PsaA/PsaBPFAMPF00223PsaA_PsaBcoord: 32..98
score: 7.8
IPR001280Photosystem I PsaA/PsaBunknownSSF81558Photosystem I subunits PsaA/PsaBcoord: 13..101
score: 1.02
NoneNo IPR availablePANTHERPTHR30128OUTER MEMBRANE PROTEIN, OMPA-RELATEDcoord: 27..100
score: 1.5
NoneNo IPR availablePANTHERPTHR30128:SF8PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1coord: 27..100
score: 1.5

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0044249 cellular biosynthetic process
biological_process GO:0006119 oxidative phosphorylation
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0006814 sodium ion transport
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0015979 photosynthesis
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0009791 post-embryonic development
biological_process GO:0009853 photorespiration
biological_process GO:0022414 reproductive process
biological_process GO:0048608 reproductive structure development
biological_process GO:0048367 shoot system development
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0009409 response to cold
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0009635 response to herbicide
biological_process GO:0008152 metabolic process
biological_process GO:0015917 aminophospholipid transport
biological_process GO:0006812 cation transport
biological_process GO:0045332 phospholipid translocation
biological_process GO:0006810 transport
biological_process GO:0019253 reductive pentose-phosphate cycle
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006554 lysine catabolic process
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0034968 histone lysine methylation
biological_process GO:0009769 photosynthesis, light harvesting in photosystem II
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0010207 photosystem II assembly
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0015074 DNA integration
biological_process GO:0046487 glyoxylate metabolic process
cellular_component GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component GO:0031966 mitochondrial membrane
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0005634 nucleus
cellular_component GO:0009579 thylakoid
cellular_component GO:0009573 chloroplast ribulose bisphosphate carboxylase complex
cellular_component GO:0009522 photosystem I
cellular_component GO:0005739 mitochondrion
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0009523 photosystem II
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0010287 plastoglobule
cellular_component GO:0005730 nucleolus
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component GO:0009507 chloroplast
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0030076 light-harvesting complex
cellular_component GO:0005840 ribosome
cellular_component GO:0005886 plasma membrane
molecular_function GO:0004012 phospholipid-translocating ATPase activity
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0010242 oxygen evolving activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0050136 NADH dehydrogenase (quinone) activity
molecular_function GO:0051287 NAD binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0046961 proton-transporting ATPase activity, rotational mechanism
molecular_function GO:0015078 proton transmembrane transporter activity
molecular_function GO:0032549 ribonucleoside binding
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
molecular_function GO:0030785 [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0048038 quinone binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0045157 electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0008777 acetylornithine deacetylase activity
molecular_function GO:0008289 lipid binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0018024 histone-lysine N-methyltransferase activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0009055 electron transfer activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo028510.98Barchart | Table
Spo062010.96Barchart | Table
Spo255550.95Barchart | Table
Spo042770.95Barchart | Table
Spo084400.90Barchart | Table
Spo106270.90Barchart | Table
Spo261260.90Barchart | Table
Spo255380.90Barchart | Table
Spo247080.89Barchart | Table
Spo247170.89Barchart | Table
Spo058750.89Barchart | Table
Spo062000.89Barchart | Table
Spo170100.89Barchart | Table
Spo250040.88Barchart | Table
Spo261270.88Barchart | Table
Spo224450.87Barchart | Table
Spo255370.87Barchart | Table
Spo094130.87Barchart | Table
Spo042780.85Barchart | Table
Spo017480.83Barchart | Table
Spo180440.83Barchart | Table
Spo164900.82Barchart | Table
Spo119040.82Barchart | Table
Spo164840.82Barchart | Table
Spo164850.82Barchart | Table
Spo006260.78Barchart | Table
Spo054120.78Barchart | Table
Spo179230.77Barchart | Table
Spo247180.77Barchart | Table
Spo161960.77Barchart | Table
Spo195600.77Barchart | Table
Spo247190.75Barchart | Table
Spo225720.74Barchart | Table
Spo164860.74Barchart | Table
Spo195610.73Barchart | Table
Spo219460.73Barchart | Table
Spo139590.72Barchart | Table
Spo214390.72Barchart | Table
Spo148160.71Barchart | Table
Spo211710.71Barchart | Table
Spo176180.70Barchart | Table
Spo195300.70Barchart | Table
Spo139570.69Barchart | Table
Spo179240.69Barchart | Table
Spo190780.69Barchart | Table
Spo073550.69Barchart | Table
Spo179250.68Barchart | Table
Spo172510.68Barchart | Table
Spo019720.68Barchart | Table
Spo225730.66Barchart | Table
Spo193360.66Barchart | Table
Spo063830.66Barchart | Table
Spo163840.66Barchart | Table
Spo040840.66Barchart | Table
Spo257070.66Barchart | Table
Spo109470.65Barchart | Table
Spo130530.65Barchart | Table
Spo022030.65Barchart | Table
Spo141040.65Barchart | Table
Spo144400.65Barchart | Table