Spo24708 (gene) | SpinachBase

Overview


Name	Spo24708
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Photosystem II CP43 reaction center protein (PSII 43 kDa protein) (Protein CP-43) (Precursor)
Location	chr4 : 55151953 .. 55152818 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATACCTGGGCTCCCGGAGGTGGAGATGTAAGAAAAATTACCAACGTCACCCTTAGTCCAAGTATTATATTTGGTTATTTACTAAAATCGCCTTTTGGAGGAGAAGGGTGGATTGTTAGTGTAGACGATTTGGAAGATATAATAGGGGGGCATGTATGGATAGGTTTCATTTGTATACTTGGTGGAATCTGGCATATTTTAACAAAACCTTTTGCATGGGCTCGCCGCGCACTTGTCTGGTCTGGCGAGGCTTATTTGTCTTATAGTTTGGCTGCTTTATCTGTCTTTGGTTTCATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCTAGTGAGTTTTACGGGCCCACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTTTAGTTAGAGACCAACGTCTTGGGGCTAACGTGGGATCCGCTCAAGGACCTACTGGTTTAGGTAAGTATCTAATGCGTTCTCCGACTGGAGAAGTTATTTTTGGGGGCGAAACTATGAGGTTTTGGGATTTGCGCGCTCCGTGGTTAGAACCCCTAAGAGGTCCAAACGGTTTGGACTTGAGTCGCCTGAAAAAAGATATACAACCTTGGCAAGAACGACGTTCAGCAGAATATATGACTCATGCTCCTTTAGGTTCTTTAAATTCTGTGGGTGGGGTGGCTACCGAGATCAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTATCTACTTCTCATTTTGTTCTAGGATTCTTCCTATTCGTAGGGCATTTGTGGCATGCGGGAAGGGCTCGTGCAGCTGCAGCAGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTTTCGATGACCCCTCTTAATTGA

mRNA sequence

ATGATACCTGGGCTCCCGGAGGTGGAGATTTTGGCTGCTTTATCTGTCTTTGGTTTCATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCTAGTGAGTTTTACGGGCCCACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTTTAGTTAGAGACCAACGTCTTGGGGCTAACGTGGGATCCGCTCAAGGACCTACTGGTTTAGGTAAGTATCTAATGCGTTCTCCGACTGGAGAAGTTATTTTTGGGGGCGAAACTATGAGGTTTTGGGATTTGCGCGCTCCGTGGTTAGAACCCCTAAGAGGTCCAAACGGTTTGGACTTGAGTCGCCTGAAAAAAGATATACAACCTTGGCAAGAACGACGTTCAGCAGAATATATGACTCATGCTCCTTTAGGTTCTTTAAATTCTGTGGGTGGGGTGGCTACCGAGATCAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTATCTACTTCTCATTTTGTTCTAGGATTCTTCCTATTCGTAGGGCATTTGTGGCATGCGGGAAGGGCTCGTGCAGCTGCAGCAGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTTTCGATGACCCCTCTTAATTGA

Coding sequence (CDS)

ATGATACCTGGGCTCCCGGAGGTGGAGATTTTGGCTGCTTTATCTGTCTTTGGTTTCATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCTAGTGAGTTTTACGGGCCCACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTTTAGTTAGAGACCAACGTCTTGGGGCTAACGTGGGATCCGCTCAAGGACCTACTGGTTTAGGTAAGTATCTAATGCGTTCTCCGACTGGAGAAGTTATTTTTGGGGGCGAAACTATGAGGTTTTGGGATTTGCGCGCTCCGTGGTTAGAACCCCTAAGAGGTCCAAACGGTTTGGACTTGAGTCGCCTGAAAAAAGATATACAACCTTGGCAAGAACGACGTTCAGCAGAATATATGACTCATGCTCCTTTAGGTTCTTTAAATTCTGTGGGTGGGGTGGCTACCGAGATCAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTATCTACTTCTCATTTTGTTCTAGGATTCTTCCTATTCGTAGGGCATTTGTGGCATGCGGGAAGGGCTCGTGCAGCTGCAGCAGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTTTCGATGACCCCTCTTAATTGA

Protein sequence

MIPGLPEVEILAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo24708.1	Spo24708.1	mRNA

Homology

[Close]

BLAST of Spo24708.1 vs. NCBI nr
Match: gi|748991308|gb|AJE71746.1| (photosystem II 44 kDa protein (plastid) [Astragalus canadensis])

HSP 1 Score: 417.2 bits (1071), Expect = 1.700e-113
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1

		  
Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 395

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 396 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 455

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 456 EKGIDRDFEPVLSMTPLN 473

[Close]

BLAST of Spo24708.1 vs. NCBI nr
Match: gi|501770850|ref|YP_007889857.1| (photosystem II CP43 chlorophyll apoprotein [Francoa sonchifolia])

HSP 1 Score: 417.2 bits (1071), Expect = 1.700e-113
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1

		  
Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 395

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 396 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 455

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 456 EKGIDRDFEPVLSMTPLN 473

[Close]

BLAST of Spo24708.1 vs. NCBI nr
Match: gi|323149078|ref|YP_004222642.1| (photosystem II CP43 chlorophyll apoprotein (chloroplast) [Anthriscus cerefolium])

HSP 1 Score: 417.2 bits (1071), Expect = 1.700e-113
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1

		  
Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 395

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 396 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 455

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 456 EKGIDRDFEPVLSMTPLN 473

[Close]

BLAST of Spo24708.1 vs. NCBI nr
Match: gi|748991812|gb|AJE72243.1| (photosystem II 44 kDa protein (plastid) [Oxytropis lambertii])

HSP 1 Score: 417.2 bits (1071), Expect = 1.700e-113
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1

		  
Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 395

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 396 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 455

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 456 EKGIDRDFEPVLSMTPLN 473

[Close]

BLAST of Spo24708.1 vs. NCBI nr
Match: gi|568244730|ref|YP_008963476.1| (photosystem II CP43 chlorophyll apoprotein (chloroplast) [Penthorum chinense])

HSP 1 Score: 417.2 bits (1071), Expect = 1.700e-113
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1

		  
Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 395

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 396 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 455

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 456 EKGIDRDFEPVLSMTPLN 473

[Close]

BLAST of Spo24708.1 vs. UniProtKB/TrEMBL
Match: A0A0K0LUI5_9FABA (Photosystem II CP43 reaction center protein OS=Astragalus canadensis GN=psbC PE=3 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 1.200e-113
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1

		  
Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 395

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 396 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 455

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 456 EKGIDRDFEPVLSMTPLN 473

[Close]

BLAST of Spo24708.1 vs. UniProtKB/TrEMBL
Match: A0A0K0LVU3_9FABA (Photosystem II CP43 reaction center protein OS=Oxytropis lambertii GN=psbC PE=3 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 1.200e-113
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1

		  
Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 395

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 396 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 455

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 456 EKGIDRDFEPVLSMTPLN 473

[Close]

BLAST of Spo24708.1 vs. UniProtKB/TrEMBL
Match: E9K7P4_9APIA (Photosystem II CP43 reaction center protein OS=Anthriscus cerefolium GN=psbC PE=3 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 1.200e-113
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1

		  
Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 395

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 396 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 455

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 456 EKGIDRDFEPVLSMTPLN 473

[Close]

BLAST of Spo24708.1 vs. UniProtKB/TrEMBL
Match: V9ZA57_9MAGN (Photosystem II CP43 reaction center protein OS=Saxifraga stolonifera GN=psbC PE=3 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 1.200e-113
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1

		  
Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 395

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 396 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 455

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 456 EKGIDRDFEPVLSMTPLN 473

[Close]

BLAST of Spo24708.1 vs. UniProtKB/TrEMBL
Match: A0A067YQE9_ROSGI (Photosystem II CP43 reaction center protein OS=Rosa gigantea GN=psbC PE=3 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 1.200e-113
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1

		  
Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 395

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 396 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 455

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 456 EKGIDRDFEPVLSMTPLN 473

[Close]

BLAST of Spo24708.1 vs. ExPASy Swiss-Prot
Match: PSBC_SPIOL (Photosystem II CP43 reaction center protein OS=Spinacia oleracea GN=psbC PE=1 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 1.100e-115
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1

		  
Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 395

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 396 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 455

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 456 EKGIDRDFEPVLSMTPLN 473

[Close]

BLAST of Spo24708.1 vs. ExPASy Swiss-Prot
Match: PSBC_LOTJA (Photosystem II CP43 reaction center protein OS=Lotus japonicus GN=psbC PE=3 SV=2)

HSP 1 Score: 416.0 bits (1068), Expect = 2.400e-115
Identity = 197/198 (99.49%), Postives = 198/198 (100.00%), Query Frame = 1

		  
Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 264 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 323

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 324 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 383

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWL+TSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 384 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGF 443

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 444 EKGIDRDFEPVLSMTPLN 461

[Close]

BLAST of Spo24708.1 vs. ExPASy Swiss-Prot
Match: PSBC_EUCGG (Photosystem II CP43 reaction center protein OS=Eucalyptus globulus subsp. globulus GN=psbC PE=3 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 2.400e-115
Identity = 197/198 (99.49%), Postives = 198/198 (100.00%), Query Frame = 1

		  
Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 395

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWL+TSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 396 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGF 455

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 456 EKGIDRDFEPVLSMTPLN 473

[Close]

BLAST of Spo24708.1 vs. ExPASy Swiss-Prot
Match: PSBC_DAUCA (Photosystem II CP43 reaction center protein OS=Daucus carota GN=psbC PE=3 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 2.400e-115
Identity = 197/198 (99.49%), Postives = 198/198 (100.00%), Query Frame = 1

		  
Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 395

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWL+TSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 396 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGF 455

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 456 EKGIDRDFEPVLSMTPLN 473

[Close]

BLAST of Spo24708.1 vs. ExPASy Swiss-Prot
Match: PSBC_DRIGR (Photosystem II CP43 reaction center protein OS=Drimys granadensis GN=psbC PE=3 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 2.400e-115
Identity = 197/198 (99.49%), Postives = 198/198 (100.00%), Query Frame = 1

		  
Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 395

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWL+TSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 396 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGF 455

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 456 EKGIDRDFEPVLSMTPLN 473

[Close]

BLAST of Spo24708.1 vs. TAIR (Arabidopsis)
Match: ATCG00280.1 (photosystem II reaction center protein C)

HSP 1 Score: 414.1 bits (1063), Expect = 5.200e-116
Identity = 197/198 (99.49%), Postives = 197/198 (99.49%), Query Frame = 1

		  
Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSV GFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVCGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 395

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 396 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 455

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 456 EKGIDRDFEPVLSMTPLN 473

The following BLAST results are available for this feature:

BLAST of Spo24708.1 vs. NCBI nr
BLAST of Spo24708.1 vs. UniProtKB/TrEMBL
BLAST of Spo24708.1 vs. ExPASy Swiss-Prot
BLAST of Spo24708.1 vs. TAIR (Arabidopsis)

BLAST of Spo24708.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|748991308\|gb\|AJE71746.1\|	1.7e-113	100.	photosystem II 44 kDa protein ...	[more]
gi\|501770850\|ref\|YP_007889857.1\|	1.7e-113	100.	photosystem II CP43 chlorophyl...	[more]
gi\|323149078\|ref\|YP_004222642.1\|	1.7e-113	100.	photosystem II CP43 chlorophyl...	[more]
gi\|748991812\|gb\|AJE72243.1\|	1.7e-113	100.	photosystem II 44 kDa protein ...	[more]
gi\|568244730\|ref\|YP_008963476.1\|	1.7e-113	100.	photosystem II CP43 chlorophyl...	[more]

BLAST of Spo24708.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K0LUI5_9FABA	1.2e-113	100.	Photosystem II CP43 reaction c...	[more]
A0A0K0LVU3_9FABA	1.2e-113	100.	Photosystem II CP43 reaction c...	[more]
E9K7P4_9APIA	1.2e-113	100.	Photosystem II CP43 reaction c...	[more]
V9ZA57_9MAGN	1.2e-113	100.	Photosystem II CP43 reaction c...	[more]
A0A067YQE9_ROSGI	1.2e-113	100.	Photosystem II CP43 reaction c...	[more]

BLAST of Spo24708.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
PSBC_SPIOL	1.1e-115	100.	Photosystem II CP43 reaction c...	[more]
PSBC_LOTJA	2.4e-115	99.4	Photosystem II CP43 reaction c...	[more]
PSBC_EUCGG	2.4e-115	99.4	Photosystem II CP43 reaction c...	[more]
PSBC_DAUCA	2.4e-115	99.4	Photosystem II CP43 reaction c...	[more]
PSBC_DRIGR	2.4e-115	99.4	Photosystem II CP43 reaction c...	[more]

BLAST of Spo24708.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
ATCG00280.1	5.2e-116	99.4	photosystem II reaction center...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 11..204 score: 8.8
IPR000932	Photosystem antenna protein-like	unknown	SSF161077	Photosystem II antenna protein-like	coord: 11..207 score: 7.19
None	No IPR available	GENE3D	1.10.10.670		coord: 39..134 score: 1.2
None	No IPR available	PANTHER	PTHR33180	FAMILY NOT NAMED	coord: 11..208 score: 7.6E
None	No IPR available	PANTHER	PTHR33180:SF4	PHOTOSYSTEM II CP43 CHLOROPHYLL APOPROTEIN	coord: 11..208 score: 7.6E

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0006814	sodium ion transport
biological_process	GO:0034968	histone lysine methylation
biological_process	GO:0006554	lysine catabolic process
biological_process	GO:0009853	photorespiration
biological_process	GO:0019253	reductive pentose-phosphate cycle
biological_process	GO:0006119	oxidative phosphorylation
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:1902600	proton transmembrane transport
biological_process	GO:0006744	ubiquinone biosynthetic process
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0009635	response to herbicide
biological_process	GO:0008152	metabolic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0046487	glyoxylate metabolic process
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
biological_process	GO:0015991	ATP hydrolysis coupled proton transport
biological_process	GO:0015979	photosynthesis
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0009769	photosynthesis, light harvesting in photosystem II
cellular_component	GO:0030076	light-harvesting complex
cellular_component	GO:0009521	photosystem
cellular_component	GO:0016020	membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0031966	mitochondrial membrane
cellular_component	GO:0031410	cytoplasmic vesicle
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005763	mitochondrial small ribosomal subunit
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009573	chloroplast ribulose bisphosphate carboxylase complex
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0000312	plastid small ribosomal subunit
cellular_component	GO:0010287	plastoglobule
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008289	lipid binding
molecular_function	GO:0048038	quinone binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0010242	oxygen evolving activity
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0045157	electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0015078	proton transmembrane transporter activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0018024	histone-lysine N-methyltransferase activity
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0008777	acetylornithine deacetylase activity
molecular_function	GO:0030785	[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity
molecular_function	GO:0046961	proton-transporting ATPase activity, rotational mechanism
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0032549	ribonucleoside binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0004497	monooxygenase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo06200	1.00	Barchart \| Table
Spo04278	0.99	Barchart \| Table
Spo17010	0.94	Barchart \| Table
Spo10627	0.92	Barchart \| Table
Spo06201	0.91	Barchart \| Table
Spo02851	0.89	Barchart \| Table
Spo25555	0.89	Barchart \| Table
Spo04277	0.89	Barchart \| Table
Spo24707	0.89	Barchart \| Table
Spo11904	0.88	Barchart \| Table
Spo16485	0.87	Barchart \| Table
Spo16490	0.86	Barchart \| Table
Spo24717	0.86	Barchart \| Table
Spo16484	0.85	Barchart \| Table
Spo08440	0.84	Barchart \| Table
Spo01748	0.83	Barchart \| Table
Spo22445	0.83	Barchart \| Table
Spo25537	0.83	Barchart \| Table
Spo26127	0.83	Barchart \| Table
Spo18044	0.82	Barchart \| Table
Spo25004	0.82	Barchart \| Table
Spo09413	0.82	Barchart \| Table
Spo05875	0.82	Barchart \| Table
Spo00626	0.81	Barchart \| Table
Spo25538	0.81	Barchart \| Table
Spo26126	0.80	Barchart \| Table
Spo24718	0.80	Barchart \| Table
Spo19560	0.79	Barchart \| Table
Spo17923	0.78	Barchart \| Table
Spo16486	0.78	Barchart \| Table
Spo22572	0.76	Barchart \| Table
Spo24719	0.76	Barchart \| Table
Spo13959	0.75	Barchart \| Table
Spo16196	0.74	Barchart \| Table
Spo19561	0.72	Barchart \| Table
Spo13957	0.72	Barchart \| Table
Spo17924	0.71	Barchart \| Table
Spo21946	0.71	Barchart \| Table
Spo19078	0.71	Barchart \| Table
Spo06757	0.70	Barchart \| Table
Spo05412	0.70	Barchart \| Table
Spo19530	0.68	Barchart \| Table
Spo17925	0.68	Barchart \| Table
Spo14816	0.67	Barchart \| Table
Spo01972	0.66	Barchart \| Table
Spo17251	0.66	Barchart \| Table
Spo16266	0.66	Barchart \| Table