Spo24719 (gene)

Overview
NameSpo24719
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionDNA-directed RNA polymerase subunit beta'' (2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta'')
Locationchr4 : 55160790 .. 55161830 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAAAATGGAAGAATTTATAATCCCGATCCATGCAGTAACATCATTTTTAATCCATTCAAGTTGAATTGGTATTTTCTTCATTATCATTTTTGTGAAGAGACATCCACCAAAATTGATCTTGGACAATTTGTTTGTGAAAATGTATGTATAACCAAAAAAGGAACGCACCTAAAATCGGGTCAAGTTCTAATTGTTCAATTTGACTCTGTAGTAATAAGATCGGCTAAGCCTTATTTGGCTACTCCAGGAGCAACACTTCATGGTCATTATGGAGAAATCATTTATGAAGGGGATACATTAGTTACATTTATATATGAAAAATCGAGGTCTGGTGACATAACGCAAGGTCTTCCAAAAGTGGAACAAGTCTTAGAAGTTCGTTCGATTGATTCAATATCCATCAATCTAGAAAAGAGGATTGATAGTTGGAACGAACGTATAACAAGAATTCTTGGAAGTCCTTGGGGATTCTTGATTGGGGCTGAGCTAACTATAGCGCAAAGTCGTATTTCTTTGGTTAACAAGATCCAAAAGGTTTATCGATCACAAGGGGTGCAGATCCATAATAGACATATAGAAATTATTGTACGTCAAATAACATCAAAAGTCTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTTGCCCGGAGAACTAATTGGATTGTTTCGGGCGGAACGAACGGGACGCGCTTTGGAAGAAGCGATATGTTACCGCGCTACCTTATTGGGAATAACGAGAGCATCTCTGAATACTCAAAGTTTTATCTCCGAAGCGAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCAGCTCTACGGGGCCGTATTGATTGGTTGAAAGGACTAAAAGAAAACGTTGTTCTGGGGGGGATGATACCTGTTGGTACCGGATTCAAAGGATTCGTACACCATTCAAGTCAACATAAGGACATTCCTTTGAAAACAAAAAAGCAGAATTTATTCGAGGGAGAAATGGGAGATATTTTGTTTTACCACAGAGAATTATTTGAGTCTTGTCTTTCAAAGAATTAA

mRNA sequence

ATGGATGAAAATGGAAGAATTTATAATCCCGATCCATGCATAATAAGATCGGCTAAGCCTTATTTGGCTACTCCAGGAGCAACACTTCATGGTCATTATGGAGAAATCATTTATGAAGGGGATACATTAGTTACATTTATATATGAAAAATCGAGGTCTGGTGACATAACGCAAGGTCTTCCAAAAGTGGAACAAGTCTTAGAAGTTCGTTCGATTGATTCAATATCCATCAATCTAGAAAAGAGGATTGATAGTTGGAACGAACGTATAACAAGAATTCTTGGAAGTCCTTGGGGATTCTTGATTGGGGCTGAGCTAACTATAGCGCAAAGTCGTATTTCTTTGGTTAACAAGATCCAAAAGGTTTATCGATCACAAGGGGTGCAGATCCATAATAGACATATAGAAATTATTGTACGTCAAATAACATCAAAAGTCTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTTGCCCGGAGAACTAATTGGATTGTTTCGGGCGGAACGAACGGGACGCGCTTTGGAAGAAGCGATATGTTACCGCGCTACCTTATTGGGAATAACGAGAGCATCTCTGAATACTCAAAGTTTTATCTCCGAAGCGAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCAGCTCTACGGGGCCGTATTGATTGGTTGAAAGGACTAAAAGAAAACGTTGTTCTGGGGGGGATGATACCTGTTGGTACCGGATTCAAAGGATTCGTACACCATTCAAGTCAACATAAGGACATTCCTTTGAAAACAAAAAAGCAGAATTTATTCGAGGGAGAAATGGGAGATATTTTGTTTTACCACAGAGAATTATTTGAGTCTTGTCTTTCAAAGAATTAA

Coding sequence (CDS)

ATGGATGAAAATGGAAGAATTTATAATCCCGATCCATGCATAATAAGATCGGCTAAGCCTTATTTGGCTACTCCAGGAGCAACACTTCATGGTCATTATGGAGAAATCATTTATGAAGGGGATACATTAGTTACATTTATATATGAAAAATCGAGGTCTGGTGACATAACGCAAGGTCTTCCAAAAGTGGAACAAGTCTTAGAAGTTCGTTCGATTGATTCAATATCCATCAATCTAGAAAAGAGGATTGATAGTTGGAACGAACGTATAACAAGAATTCTTGGAAGTCCTTGGGGATTCTTGATTGGGGCTGAGCTAACTATAGCGCAAAGTCGTATTTCTTTGGTTAACAAGATCCAAAAGGTTTATCGATCACAAGGGGTGCAGATCCATAATAGACATATAGAAATTATTGTACGTCAAATAACATCAAAAGTCTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTTGCCCGGAGAACTAATTGGATTGTTTCGGGCGGAACGAACGGGACGCGCTTTGGAAGAAGCGATATGTTACCGCGCTACCTTATTGGGAATAACGAGAGCATCTCTGAATACTCAAAGTTTTATCTCCGAAGCGAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCAGCTCTACGGGGCCGTATTGATTGGTTGAAAGGACTAAAAGAAAACGTTGTTCTGGGGGGGATGATACCTGTTGGTACCGGATTCAAAGGATTCGTACACCATTCAAGTCAACATAAGGACATTCCTTTGAAAACAAAAAAGCAGAATTTATTCGAGGGAGAAATGGGAGATATTTTGTTTTACCACAGAGAATTATTTGAGTCTTGTCTTTCAAAGAATTAA

Protein sequence

MDENGRIYNPDPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSSQHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo24719.1Spo24719.1mRNA


Homology
[Close]
BLAST of Spo24719.1 vs. NCBI nr
Match: gi|126022792|ref|NP_054922.2| (RNA polymerase beta'' subunit [Spinacia oleracea])

HSP 1 Score: 545.4 bits (1404), Expect = 5.800e-152
Identity = 274/277 (98.92%), Postives = 275/277 (99.28%), Query Frame = 1 

		  

Query: 11   DPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 70
            D  +IRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 1081 DSVVIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1140

Query: 71   SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 130
            SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI
Sbjct: 1141 SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 1200

Query: 131  HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITR 190
            HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITR
Sbjct: 1201 HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITR 1260

Query: 191  ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSS 250
            ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSS
Sbjct: 1261 ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSS 1320

Query: 251  QHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 288
            QHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN
Sbjct: 1321 QHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 1357
[Close]
BLAST of Spo24719.1 vs. NCBI nr
Match: gi|133448|sp|P11704.1|RPOC2_SPIOL (RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit beta''; Short=RNA polymerase subunit beta'' (chloroplast) [Spinacia oleracea])

HSP 1 Score: 545.4 bits (1404), Expect = 5.800e-152
Identity = 274/277 (98.92%), Postives = 275/277 (99.28%), Query Frame = 1 

		  

Query: 11   DPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 70
            D  +IRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 1085 DSVVIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1144

Query: 71   SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 130
            SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI
Sbjct: 1145 SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 1204

Query: 131  HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITR 190
            HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITR
Sbjct: 1205 HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITR 1264

Query: 191  ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSS 250
            ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSS
Sbjct: 1265 ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSS 1324

Query: 251  QHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 288
            QHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN
Sbjct: 1325 QHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 1361
[Close]
BLAST of Spo24719.1 vs. NCBI nr
Match: gi|932252323|gb|ALG63279.1| (RNA polymerase beta'' subunit (chloroplast) [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 524.6 bits (1350), Expect = 1.100e-145
Identity = 264/281 (93.95%), Postives = 271/281 (96.44%), Query Frame = 1 

		  

Query: 7    IYNPDPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 66
            I   D  +IRSAKPYLATPGAT+HGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV
Sbjct: 1077 IVQSDYVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 1136

Query: 67   LEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 126
            LEVRSI+SIS+NL+KRID WNERITRILG PWGF IGAELTIAQSRISLVNKIQKVYRSQ
Sbjct: 1137 LEVRSINSISMNLKKRIDGWNERITRILGIPWGFFIGAELTIAQSRISLVNKIQKVYRSQ 1196

Query: 127  GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL 186
            GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL
Sbjct: 1197 GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL 1256

Query: 187  GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFV 246
            GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFV
Sbjct: 1257 GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFV 1316

Query: 247  HHSSQHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 288
            HHSSQHK IPLKTKK+NLFEGEMGDILFYHRELF+S LSKN
Sbjct: 1317 HHSSQHKGIPLKTKKKNLFEGEMGDILFYHRELFDSFLSKN 1357
[Close]
BLAST of Spo24719.1 vs. NCBI nr
Match: gi|628819098|gb|AHY80531.1| (RNA polymerase beta' subunit (plastid) [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 524.6 bits (1350), Expect = 1.100e-145
Identity = 264/281 (93.95%), Postives = 271/281 (96.44%), Query Frame = 1 

		  

Query: 7    IYNPDPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 66
            I   D  +IRSAKPYLATPGAT+HGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV
Sbjct: 1081 IVQSDYVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 1140

Query: 67   LEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 126
            LEVRSI+SIS+NL+KRID WNERITRILG PWGF IGAELTIAQSRISLVNKIQKVYRSQ
Sbjct: 1141 LEVRSINSISMNLKKRIDGWNERITRILGIPWGFFIGAELTIAQSRISLVNKIQKVYRSQ 1200

Query: 127  GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL 186
            GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL
Sbjct: 1201 GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL 1260

Query: 187  GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFV 246
            GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFV
Sbjct: 1261 GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFV 1320

Query: 247  HHSSQHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 288
            HHSSQHK IPLKTKK+NLFEGEMGDILFYHRELF+S LSKN
Sbjct: 1321 HHSSQHKGIPLKTKKKNLFEGEMGDILFYHRELFDSFLSKN 1361
[Close]
BLAST of Spo24719.1 vs. NCBI nr
Match: gi|1020267074|gb|AMZ03425.1| (DNA-directed RNA polymerase subunit beta (chloroplast) [Bienertia sinuspersici])

HSP 1 Score: 520.0 bits (1338), Expect = 2.600e-144
Identity = 261/277 (94.22%), Postives = 268/277 (96.75%), Query Frame = 1 

		  

Query: 11   DPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 70
            D  +IRSAK YLATPGAT+HGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 1091 DSVVIRSAKAYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1150

Query: 71   SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 130
            SIDSIS+NL KRID WNERITRILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI
Sbjct: 1151 SIDSISMNLAKRIDGWNERITRILGMPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 1210

Query: 131  HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITR 190
            HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRA LLGIT+
Sbjct: 1211 HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRAILLGITK 1270

Query: 191  ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSS 250
            ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVH+SS
Sbjct: 1271 ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHYSS 1330

Query: 251  QHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 288
            QHK IPLKTKK+NLFE EMGDILFYHRELF+SCLSKN
Sbjct: 1331 QHKGIPLKTKKKNLFEKEMGDILFYHRELFDSCLSKN 1367
[Close]
BLAST of Spo24719.1 vs. UniProtKB/TrEMBL
Match: A0A0N9LME3_BETVU (DNA-directed RNA polymerase subunit beta'' OS=Beta vulgaris subsp. vulgaris GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 524.6 bits (1350), Expect = 7.400e-146
Identity = 264/281 (93.95%), Postives = 271/281 (96.44%), Query Frame = 1 

		  

Query: 7    IYNPDPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 66
            I   D  +IRSAKPYLATPGAT+HGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV
Sbjct: 1077 IVQSDYVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 1136

Query: 67   LEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 126
            LEVRSI+SIS+NL+KRID WNERITRILG PWGF IGAELTIAQSRISLVNKIQKVYRSQ
Sbjct: 1137 LEVRSINSISMNLKKRIDGWNERITRILGIPWGFFIGAELTIAQSRISLVNKIQKVYRSQ 1196

Query: 127  GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL 186
            GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL
Sbjct: 1197 GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL 1256

Query: 187  GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFV 246
            GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFV
Sbjct: 1257 GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFV 1316

Query: 247  HHSSQHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 288
            HHSSQHK IPLKTKK+NLFEGEMGDILFYHRELF+S LSKN
Sbjct: 1317 HHSSQHKGIPLKTKKKNLFEGEMGDILFYHRELFDSFLSKN 1357
[Close]
BLAST of Spo24719.1 vs. UniProtKB/TrEMBL
Match: A0A023ZQ94_BETVU (DNA-directed RNA polymerase subunit OS=Beta vulgaris subsp. vulgaris GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 524.6 bits (1350), Expect = 7.400e-146
Identity = 264/281 (93.95%), Postives = 271/281 (96.44%), Query Frame = 1 

		  

Query: 7    IYNPDPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 66
            I   D  +IRSAKPYLATPGAT+HGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV
Sbjct: 1081 IVQSDYVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 1140

Query: 67   LEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 126
            LEVRSI+SIS+NL+KRID WNERITRILG PWGF IGAELTIAQSRISLVNKIQKVYRSQ
Sbjct: 1141 LEVRSINSISMNLKKRIDGWNERITRILGIPWGFFIGAELTIAQSRISLVNKIQKVYRSQ 1200

Query: 127  GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL 186
            GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL
Sbjct: 1201 GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL 1260

Query: 187  GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFV 246
            GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFV
Sbjct: 1261 GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFV 1320

Query: 247  HHSSQHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 288
            HHSSQHK IPLKTKK+NLFEGEMGDILFYHRELF+S LSKN
Sbjct: 1321 HHSSQHKGIPLKTKKKNLFEGEMGDILFYHRELFDSFLSKN 1361
[Close]
BLAST of Spo24719.1 vs. UniProtKB/TrEMBL
Match: A0A159ZTD2_9CARY (DNA-directed RNA polymerase subunit beta OS=Bienertia sinuspersici GN=rpoC2 PE=4 SV=1)

HSP 1 Score: 520.0 bits (1338), Expect = 1.800e-144
Identity = 261/277 (94.22%), Postives = 268/277 (96.75%), Query Frame = 1 

		  

Query: 11   DPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 70
            D  +IRSAK YLATPGAT+HGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 1091 DSVVIRSAKAYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1150

Query: 71   SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 130
            SIDSIS+NL KRID WNERITRILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI
Sbjct: 1151 SIDSISMNLAKRIDGWNERITRILGMPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 1210

Query: 131  HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITR 190
            HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRA LLGIT+
Sbjct: 1211 HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRAILLGITK 1270

Query: 191  ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSS 250
            ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVH+SS
Sbjct: 1271 ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHYSS 1330

Query: 251  QHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 288
            QHK IPLKTKK+NLFE EMGDILFYHRELF+SCLSKN
Sbjct: 1331 QHKGIPLKTKKKNLFEKEMGDILFYHRELFDSCLSKN 1367
[Close]
BLAST of Spo24719.1 vs. UniProtKB/TrEMBL
Match: A0A0G2QXB9_SALEU (DNA-directed RNA polymerase subunit beta'' OS=Salicornia europaea GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 517.7 bits (1332), Expect = 9.100e-144
Identity = 259/277 (93.50%), Postives = 267/277 (96.39%), Query Frame = 1 

		  

Query: 11   DPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 70
            D  +IRSAK YLATPGAT+HGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 1091 DSVVIRSAKAYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1150

Query: 71   SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 130
            SIDSIS+NL KR+D WNERITRILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI
Sbjct: 1151 SIDSISMNLAKRVDGWNERITRILGMPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 1210

Query: 131  HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITR 190
            HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRA LLGIT+
Sbjct: 1211 HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRAILLGITK 1270

Query: 191  ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSS 250
            ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVH+SS
Sbjct: 1271 ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHYSS 1330

Query: 251  QHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 288
             HK IPLKTKK+NLFE EMGDILFYHRELF+SCLSKN
Sbjct: 1331 DHKGIPLKTKKKNLFEKEMGDILFYHRELFDSCLSKN 1367
[Close]
BLAST of Spo24719.1 vs. UniProtKB/TrEMBL
Match: A0A0G2QXI3_SALBI (DNA-directed RNA polymerase subunit beta'' OS=Salicornia bigelovii GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 517.7 bits (1332), Expect = 9.100e-144
Identity = 259/277 (93.50%), Postives = 267/277 (96.39%), Query Frame = 1 

		  

Query: 11   DPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 70
            D  +IRSAK YLATPGAT+HGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 1089 DSVVIRSAKAYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1148

Query: 71   SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 130
            SIDSIS+NL KR+D WNERITRILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI
Sbjct: 1149 SIDSISMNLAKRVDGWNERITRILGMPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 1208

Query: 131  HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITR 190
            HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRA LLGIT+
Sbjct: 1209 HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRAILLGITK 1268

Query: 191  ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSS 250
            ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVH+SS
Sbjct: 1269 ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHYSS 1328

Query: 251  QHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 288
             HK IPLKTKK+NLFE EMGDILFYHRELF+SCLSKN
Sbjct: 1329 DHKGIPLKTKKKNLFEKEMGDILFYHRELFDSCLSKN 1365
[Close]
BLAST of Spo24719.1 vs. ExPASy Swiss-Prot
Match: RPOC2_SPIOL (DNA-directed RNA polymerase subunit beta'' OS=Spinacia oleracea GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 545.4 bits (1404), Expect = 3.600e-154
Identity = 274/277 (98.92%), Postives = 275/277 (99.28%), Query Frame = 1 

		  

Query: 11   DPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 70
            D  +IRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 1085 DSVVIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1144

Query: 71   SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 130
            SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI
Sbjct: 1145 SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 1204

Query: 131  HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITR 190
            HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITR
Sbjct: 1205 HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITR 1264

Query: 191  ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSS 250
            ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSS
Sbjct: 1265 ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSS 1324

Query: 251  QHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 288
            QHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN
Sbjct: 1325 QHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 1361
[Close]
BLAST of Spo24719.1 vs. ExPASy Swiss-Prot
Match: RPOC2_EUCGG (DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulus GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 497.7 bits (1280), Expect = 8.700e-140
Identity = 248/280 (88.57%), Postives = 262/280 (93.57%), Query Frame = 1 

		  

Query: 7    IYNPDPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 66
            I   D  +IRSAKPYLATPGAT+HGHYGEI+YEGDTLVTFIYEKSRSGDITQGLPKVEQV
Sbjct: 1097 IVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQV 1156

Query: 67   LEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 126
            LEVRSIDSIS+NLEKRI+ WNE I +ILG PWGFLIGAELTI QSRISLVNKIQKVYRSQ
Sbjct: 1157 LEVRSIDSISMNLEKRIEGWNEHIKKILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQ 1216

Query: 127  GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL 186
            GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGL RA RTGRALEE+ICYRA LL
Sbjct: 1217 GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLRAARTGRALEESICYRAILL 1276

Query: 187  GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFV 246
            GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV+GGMIPVGTGFKG V
Sbjct: 1277 GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVIGGMIPVGTGFKGLV 1336

Query: 247  HHSSQHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSK 287
            H S QHK+IPLKTKK+N FEGE+GDILF+HRELF+S +SK
Sbjct: 1337 HRSRQHKNIPLKTKKKNFFEGEIGDILFHHRELFDSSISK 1376
[Close]
BLAST of Spo24719.1 vs. ExPASy Swiss-Prot
Match: RPOC2_NICTO (DNA-directed RNA polymerase subunit beta'' OS=Nicotiana tomentosiformis GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 7.400e-139
Identity = 247/277 (89.17%), Postives = 261/277 (94.22%), Query Frame = 1 

		  

Query: 11   DPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 70
            D  +IRSAKPYLATPGAT+HGHYGE +YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 1101 DSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1160

Query: 71   SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 130
            SIDSIS+NLEKRI+ WN+ ITRILG PWGFLIGAELTIAQSRISLVNKIQ+VYRSQGVQI
Sbjct: 1161 SIDSISMNLEKRIEGWNKCITRILGIPWGFLIGAELTIAQSRISLVNKIQQVYRSQGVQI 1220

Query: 131  HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITR 190
            HNRHIEIIVRQITSKVLVSEDGMSNVF PGELIGL RAER GRALEEAICYR  LLGITR
Sbjct: 1221 HNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERMGRALEEAICYRVVLLGITR 1280

Query: 191  ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSS 250
            ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG+IPVGTGFKG VH S 
Sbjct: 1281 ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPVGTGFKGLVHPSK 1340

Query: 251  QHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 288
            QH +IPL+TKK+NLFEGEM DILF+HR+LF+SCLSKN
Sbjct: 1341 QHNNIPLETKKKNLFEGEMRDILFHHRKLFDSCLSKN 1377
[Close]
BLAST of Spo24719.1 vs. ExPASy Swiss-Prot
Match: RPOC2_PLAOC (DNA-directed RNA polymerase subunit beta'' OS=Platanus occidentalis GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 7.400e-139
Identity = 246/281 (87.54%), Postives = 262/281 (93.24%), Query Frame = 1 

		  

Query: 7    IYNPDPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 66
            I + D  +IRSAKPYLATPGAT+HGHYGEI+Y+GDTLVTFIYEKSRSGDITQGLPKVEQV
Sbjct: 1092 IVHVDSLVIRSAKPYLATPGATVHGHYGEILYKGDTLVTFIYEKSRSGDITQGLPKVEQV 1151

Query: 67   LEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 126
            LEVRSIDSIS+ LE R++ WNERITRILG PW +LIGAELTIAQSRISLVNKIQKVYRSQ
Sbjct: 1152 LEVRSIDSISMTLENRVEGWNERITRILGIPWEYLIGAELTIAQSRISLVNKIQKVYRSQ 1211

Query: 127  GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL 186
            GVQIHNRHIEIIVRQITSKVLVSEDGMSNVF PGELIGLFRAERTGRALEEAICYRA LL
Sbjct: 1212 GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLFRAERTGRALEEAICYRAVLL 1271

Query: 187  GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFV 246
            GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKG V
Sbjct: 1272 GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLV 1331

Query: 247  HHSSQHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 288
            H S +H +IPL+ KK+NLFEGEM D LF+HRELF+SC+ KN
Sbjct: 1332 HRSREHNNIPLEIKKKNLFEGEMRDTLFHHRELFDSCIPKN 1372
[Close]
BLAST of Spo24719.1 vs. ExPASy Swiss-Prot
Match: RPOC2_CHLSC (DNA-directed RNA polymerase subunit beta'' OS=Chloranthus spicatus GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 494.2 bits (1271), Expect = 9.600e-139
Identity = 247/278 (88.85%), Postives = 260/278 (93.53%), Query Frame = 1 

		  

Query: 7    IYNPDPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 66
            I + D  +IRSAKP+LATPGAT+HGHYGEI+YEGDTLVTFIYEKSRSGDITQGLPKVEQV
Sbjct: 1092 IVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQV 1151

Query: 67   LEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 126
            LEVRSIDSISINLEKR++ WNERITRI+G PWGFLIGAELTIAQSRISLVNKIQKVYRSQ
Sbjct: 1152 LEVRSIDSISINLEKRVEGWNERITRIIGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 1211

Query: 127  GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL 186
            GVQIHNRHIEIIVRQITSKVLVSEDGMSNVF PGELIGL RAERTGRALEEAICYRA LL
Sbjct: 1212 GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILL 1271

Query: 187  GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFV 246
            GITR SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKG V
Sbjct: 1272 GITRTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLV 1331

Query: 247  HHSSQHKDIPLKTKKQNLFEGEMGDILFYHRELFESCL 285
            H S QH + PL+ KK+NLFEGEM DILF+HRELF SC+
Sbjct: 1332 HRSRQHNNSPLEIKKKNLFEGEMRDILFHHRELFGSCI 1369
[Close]
BLAST of Spo24719.1 vs. TAIR (Arabidopsis)
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein)

HSP 1 Score: 466.8 bits (1200), Expect = 9.300e-132
Identity = 242/284 (85.21%), Postives = 254/284 (89.44%), Query Frame = 1 

		  

Query: 7    IYNPDPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 66
            I   D  +IRSAKPYLATPGA +HGHY EI+YEGDTLVTFIYEKSRSGDITQGLPKVEQV
Sbjct: 1088 IVQRDSAVIRSAKPYLATPGAKVHGHYSEILYEGDTLVTFIYEKSRSGDITQGLPKVEQV 1147

Query: 67   LEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 126
            LEVRSIDSIS+NLEKRI  WN+ ITRILG PWGFLIGAELTI QSRISLVNKIQKVYRSQ
Sbjct: 1148 LEVRSIDSISLNLEKRIKGWNKCITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQ 1207

Query: 127  GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL 186
            GVQIHNRHIEIIVRQITSKVLVSE+GMSNVFLPGELIGL RAERTGRALEEAICYRA LL
Sbjct: 1208 GVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLL 1267

Query: 187  GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGF-KGF 246
            GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG+IP GTGF KG 
Sbjct: 1268 GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPAGTGFNKGL 1327

Query: 247  VHHSSQHKDIPL--KTKKQNLFEGEMGDILFYHRELFESCLSKN 288
            VH S QH +I L  KTK   LFEG+M DILFYHRE  +S +SK+
Sbjct: 1328 VHCSRQHTNIILEKKTKNLALFEGDMRDILFYHREFCDSSISKS 1371
[Close]
BLAST of Spo24719.1 vs. TAIR (Arabidopsis)
Match: AT4G35800.1 (RNA polymerase II large subunit)

HSP 1 Score: 50.4 bits (119), Expect = 2.100e-6
Identity = 25/67 (37.31%), Postives = 38/67 (56.72%), Query Frame = 1 

		  

Query: 177  EAICYRATLLGITRASLNTQSF--ISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG 236
            + + YR  L+ ITR  +N      +   SF+ET  +L  AA     D L+G+ EN++LG 
Sbjct: 1394 DTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQ 1453

Query: 237  MIPVGTG 242
            + P+GTG
Sbjct: 1454 LAPIGTG 1460
The following BLAST results are available for this feature:
BLAST of Spo24719.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|126022792|ref|NP_054922.2|5.8e-15298.9RNA polymerase beta'' subunit ... [more]
gi|133448|sp|P11704.1|RPOC2_SPIOL5.8e-15298.9RecName: Full=DNA-directed RNA... [more]
gi|932252323|gb|ALG63279.1|1.1e-14593.9RNA polymerase beta'' subunit ... [more]
gi|628819098|gb|AHY80531.1|1.1e-14593.9RNA polymerase beta' subunit (... [more]
gi|1020267074|gb|AMZ03425.1|2.6e-14494.2DNA-directed RNA polymerase su... [more]
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BLAST of Spo24719.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0N9LME3_BETVU7.4e-14693.9DNA-directed RNA polymerase su... [more]
A0A023ZQ94_BETVU7.4e-14693.9DNA-directed RNA polymerase su... [more]
A0A159ZTD2_9CARY1.8e-14494.2DNA-directed RNA polymerase su... [more]
A0A0G2QXB9_SALEU9.1e-14493.5DNA-directed RNA polymerase su... [more]
A0A0G2QXI3_SALBI9.1e-14493.5DNA-directed RNA polymerase su... [more]
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BLAST of Spo24719.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RPOC2_SPIOL3.6e-15498.9DNA-directed RNA polymerase su... [more]
RPOC2_EUCGG8.7e-14088.5DNA-directed RNA polymerase su... [more]
RPOC2_NICTO7.4e-13989.1DNA-directed RNA polymerase su... [more]
RPOC2_PLAOC7.4e-13987.5DNA-directed RNA polymerase su... [more]
RPOC2_CHLSC9.6e-13988.8DNA-directed RNA polymerase su... [more]
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BLAST of Spo24719.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
ATCG00170.19.3e-13285.2DNA-directed RNA polymerase fa... [more]
AT4G35800.12.1e-637.3RNA polymerase II large subuni... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007081RNA polymerase Rpb1, domain 5PFAMPF04998RNA_pol_Rpb1_5coord: 106..194
score: 2.
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 182..287
score: 1.9E-124coord: 6..144
score: 1.9E
NoneNo IPR availablePANTHERPTHR19376:SF38DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''coord: 182..287
score: 1.9E-124coord: 6..144
score: 1.9E
NoneNo IPR availableunknownSSF64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 52..255
score: 1.07

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006096 glycolytic process
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0034968 histone lysine methylation
biological_process GO:0006554 lysine catabolic process
biological_process GO:0009853 photorespiration
biological_process GO:0019253 reductive pentose-phosphate cycle
biological_process GO:0006972 hyperosmotic response
biological_process GO:0007030 Golgi organization
biological_process GO:0006094 gluconeogenesis
biological_process GO:0046686 response to cadmium ion
biological_process GO:0006119 oxidative phosphorylation
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0015074 DNA integration
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0006810 transport
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0006814 sodium ion transport
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:0009409 response to cold
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0009769 photosynthesis, light harvesting in photosystem II
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0051788 response to misfolded protein
biological_process GO:0010207 photosystem II assembly
biological_process GO:0006833 water transport
biological_process GO:0009651 response to salt stress
biological_process GO:0015979 photosynthesis
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
cellular_component GO:0010287 plastoglobule
cellular_component GO:0009523 photosystem II
cellular_component GO:0009522 photosystem I
cellular_component GO:0031361 integral component of thylakoid membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0005730 nucleolus
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component GO:0030076 light-harvesting complex
cellular_component GO:0019773 proteasome core complex, alpha-subunit complex
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0048046 apoplast
cellular_component GO:0005739 mitochondrion
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component GO:0005829 cytosol
cellular_component GO:0005634 nucleus
cellular_component GO:0009573 chloroplast ribulose bisphosphate carboxylase complex
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0032549 ribonucleoside binding
molecular_function GO:0020037 heme binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0045157 electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
molecular_function GO:0048038 quinone binding
molecular_function GO:0018024 histone-lysine N-methyltransferase activity
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity
molecular_function GO:0030785 [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity
molecular_function GO:0046961 proton-transporting ATPase activity, rotational mechanism
molecular_function GO:0008777 acetylornithine deacetylase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0046872 metal ion binding
molecular_function GO:0051287 NAD binding
molecular_function GO:0050136 NADH dehydrogenase (quinone) activity
molecular_function GO:0004298 threonine-type endopeptidase activity
RNA-Seq Expression