Spo24719 (gene) | SpinachBase

Overview


Name	Spo24719
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	DNA-directed RNA polymerase subunit beta'' (2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta'')
Location	chr4 : 55160790 .. 55161830 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAAAATGGAAGAATTTATAATCCCGATCCATGCAGTAACATCATTTTTAATCCATTCAAGTTGAATTGGTATTTTCTTCATTATCATTTTTGTGAAGAGACATCCACCAAAATTGATCTTGGACAATTTGTTTGTGAAAATGTATGTATAACCAAAAAAGGAACGCACCTAAAATCGGGTCAAGTTCTAATTGTTCAATTTGACTCTGTAGTAATAAGATCGGCTAAGCCTTATTTGGCTACTCCAGGAGCAACACTTCATGGTCATTATGGAGAAATCATTTATGAAGGGGATACATTAGTTACATTTATATATGAAAAATCGAGGTCTGGTGACATAACGCAAGGTCTTCCAAAAGTGGAACAAGTCTTAGAAGTTCGTTCGATTGATTCAATATCCATCAATCTAGAAAAGAGGATTGATAGTTGGAACGAACGTATAACAAGAATTCTTGGAAGTCCTTGGGGATTCTTGATTGGGGCTGAGCTAACTATAGCGCAAAGTCGTATTTCTTTGGTTAACAAGATCCAAAAGGTTTATCGATCACAAGGGGTGCAGATCCATAATAGACATATAGAAATTATTGTACGTCAAATAACATCAAAAGTCTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTTGCCCGGAGAACTAATTGGATTGTTTCGGGCGGAACGAACGGGACGCGCTTTGGAAGAAGCGATATGTTACCGCGCTACCTTATTGGGAATAACGAGAGCATCTCTGAATACTCAAAGTTTTATCTCCGAAGCGAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCAGCTCTACGGGGCCGTATTGATTGGTTGAAAGGACTAAAAGAAAACGTTGTTCTGGGGGGGATGATACCTGTTGGTACCGGATTCAAAGGATTCGTACACCATTCAAGTCAACATAAGGACATTCCTTTGAAAACAAAAAAGCAGAATTTATTCGAGGGAGAAATGGGAGATATTTTGTTTTACCACAGAGAATTATTTGAGTCTTGTCTTTCAAAGAATTAA

mRNA sequence

ATGGATGAAAATGGAAGAATTTATAATCCCGATCCATGCATAATAAGATCGGCTAAGCCTTATTTGGCTACTCCAGGAGCAACACTTCATGGTCATTATGGAGAAATCATTTATGAAGGGGATACATTAGTTACATTTATATATGAAAAATCGAGGTCTGGTGACATAACGCAAGGTCTTCCAAAAGTGGAACAAGTCTTAGAAGTTCGTTCGATTGATTCAATATCCATCAATCTAGAAAAGAGGATTGATAGTTGGAACGAACGTATAACAAGAATTCTTGGAAGTCCTTGGGGATTCTTGATTGGGGCTGAGCTAACTATAGCGCAAAGTCGTATTTCTTTGGTTAACAAGATCCAAAAGGTTTATCGATCACAAGGGGTGCAGATCCATAATAGACATATAGAAATTATTGTACGTCAAATAACATCAAAAGTCTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTTGCCCGGAGAACTAATTGGATTGTTTCGGGCGGAACGAACGGGACGCGCTTTGGAAGAAGCGATATGTTACCGCGCTACCTTATTGGGAATAACGAGAGCATCTCTGAATACTCAAAGTTTTATCTCCGAAGCGAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCAGCTCTACGGGGCCGTATTGATTGGTTGAAAGGACTAAAAGAAAACGTTGTTCTGGGGGGGATGATACCTGTTGGTACCGGATTCAAAGGATTCGTACACCATTCAAGTCAACATAAGGACATTCCTTTGAAAACAAAAAAGCAGAATTTATTCGAGGGAGAAATGGGAGATATTTTGTTTTACCACAGAGAATTATTTGAGTCTTGTCTTTCAAAGAATTAA

Coding sequence (CDS)

ATGGATGAAAATGGAAGAATTTATAATCCCGATCCATGCATAATAAGATCGGCTAAGCCTTATTTGGCTACTCCAGGAGCAACACTTCATGGTCATTATGGAGAAATCATTTATGAAGGGGATACATTAGTTACATTTATATATGAAAAATCGAGGTCTGGTGACATAACGCAAGGTCTTCCAAAAGTGGAACAAGTCTTAGAAGTTCGTTCGATTGATTCAATATCCATCAATCTAGAAAAGAGGATTGATAGTTGGAACGAACGTATAACAAGAATTCTTGGAAGTCCTTGGGGATTCTTGATTGGGGCTGAGCTAACTATAGCGCAAAGTCGTATTTCTTTGGTTAACAAGATCCAAAAGGTTTATCGATCACAAGGGGTGCAGATCCATAATAGACATATAGAAATTATTGTACGTCAAATAACATCAAAAGTCTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTTGCCCGGAGAACTAATTGGATTGTTTCGGGCGGAACGAACGGGACGCGCTTTGGAAGAAGCGATATGTTACCGCGCTACCTTATTGGGAATAACGAGAGCATCTCTGAATACTCAAAGTTTTATCTCCGAAGCGAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCAGCTCTACGGGGCCGTATTGATTGGTTGAAAGGACTAAAAGAAAACGTTGTTCTGGGGGGGATGATACCTGTTGGTACCGGATTCAAAGGATTCGTACACCATTCAAGTCAACATAAGGACATTCCTTTGAAAACAAAAAAGCAGAATTTATTCGAGGGAGAAATGGGAGATATTTTGTTTTACCACAGAGAATTATTTGAGTCTTGTCTTTCAAAGAATTAA

Protein sequence

MDENGRIYNPDPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSSQHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo24719.1	Spo24719.1	mRNA

Homology

[Close]

BLAST of Spo24719.1 vs. NCBI nr
Match: gi|126022792|ref|NP_054922.2| (RNA polymerase beta'' subunit [Spinacia oleracea])

HSP 1 Score: 545.4 bits (1404), Expect = 5.800e-152
Identity = 274/277 (98.92%), Postives = 275/277 (99.28%), Query Frame = 1

		  
Query: 11   DPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 70
            D  +IRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 1081 DSVVIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1140

Query: 71   SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 130
            SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI
Sbjct: 1141 SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 1200

Query: 131  HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITR 190
            HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITR
Sbjct: 1201 HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITR 1260

Query: 191  ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSS 250
            ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSS
Sbjct: 1261 ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSS 1320

Query: 251  QHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 288
            QHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN
Sbjct: 1321 QHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 1357

[Close]

BLAST of Spo24719.1 vs. NCBI nr
Match: gi|133448|sp|P11704.1|RPOC2_SPIOL (RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit beta''; Short=RNA polymerase subunit beta'' (chloroplast) [Spinacia oleracea])

HSP 1 Score: 545.4 bits (1404), Expect = 5.800e-152
Identity = 274/277 (98.92%), Postives = 275/277 (99.28%), Query Frame = 1

		  
Query: 11   DPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 70
            D  +IRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 1085 DSVVIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1144

Query: 71   SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 130
            SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI
Sbjct: 1145 SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 1204

Query: 131  HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITR 190
            HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITR
Sbjct: 1205 HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITR 1264

Query: 191  ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSS 250
            ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSS
Sbjct: 1265 ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSS 1324

Query: 251  QHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 288
            QHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN
Sbjct: 1325 QHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 1361

[Close]

BLAST of Spo24719.1 vs. NCBI nr
Match: gi|932252323|gb|ALG63279.1| (RNA polymerase beta'' subunit (chloroplast) [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 524.6 bits (1350), Expect = 1.100e-145
Identity = 264/281 (93.95%), Postives = 271/281 (96.44%), Query Frame = 1

		  
Query: 7    IYNPDPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 66
            I   D  +IRSAKPYLATPGAT+HGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV
Sbjct: 1077 IVQSDYVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 1136

Query: 67   LEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 126
            LEVRSI+SIS+NL+KRID WNERITRILG PWGF IGAELTIAQSRISLVNKIQKVYRSQ
Sbjct: 1137 LEVRSINSISMNLKKRIDGWNERITRILGIPWGFFIGAELTIAQSRISLVNKIQKVYRSQ 1196

Query: 127  GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL 186
            GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL
Sbjct: 1197 GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL 1256

Query: 187  GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFV 246
            GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFV
Sbjct: 1257 GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFV 1316

Query: 247  HHSSQHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 288
            HHSSQHK IPLKTKK+NLFEGEMGDILFYHRELF+S LSKN
Sbjct: 1317 HHSSQHKGIPLKTKKKNLFEGEMGDILFYHRELFDSFLSKN 1357

[Close]

BLAST of Spo24719.1 vs. NCBI nr
Match: gi|628819098|gb|AHY80531.1| (RNA polymerase beta' subunit (plastid) [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 524.6 bits (1350), Expect = 1.100e-145
Identity = 264/281 (93.95%), Postives = 271/281 (96.44%), Query Frame = 1

		  
Query: 7    IYNPDPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 66
            I   D  +IRSAKPYLATPGAT+HGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV
Sbjct: 1081 IVQSDYVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 1140

Query: 67   LEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 126
            LEVRSI+SIS+NL+KRID WNERITRILG PWGF IGAELTIAQSRISLVNKIQKVYRSQ
Sbjct: 1141 LEVRSINSISMNLKKRIDGWNERITRILGIPWGFFIGAELTIAQSRISLVNKIQKVYRSQ 1200

Query: 127  GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL 186
            GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL
Sbjct: 1201 GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL 1260

Query: 187  GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFV 246
            GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFV
Sbjct: 1261 GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFV 1320

Query: 247  HHSSQHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 288
            HHSSQHK IPLKTKK+NLFEGEMGDILFYHRELF+S LSKN
Sbjct: 1321 HHSSQHKGIPLKTKKKNLFEGEMGDILFYHRELFDSFLSKN 1361

[Close]

BLAST of Spo24719.1 vs. NCBI nr
Match: gi|1020267074|gb|AMZ03425.1| (DNA-directed RNA polymerase subunit beta (chloroplast) [Bienertia sinuspersici])

HSP 1 Score: 520.0 bits (1338), Expect = 2.600e-144
Identity = 261/277 (94.22%), Postives = 268/277 (96.75%), Query Frame = 1

		  
Query: 11   DPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 70
            D  +IRSAK YLATPGAT+HGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 1091 DSVVIRSAKAYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1150

Query: 71   SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 130
            SIDSIS+NL KRID WNERITRILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI
Sbjct: 1151 SIDSISMNLAKRIDGWNERITRILGMPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 1210

Query: 131  HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITR 190
            HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRA LLGIT+
Sbjct: 1211 HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRAILLGITK 1270

Query: 191  ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSS 250
            ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVH+SS
Sbjct: 1271 ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHYSS 1330

Query: 251  QHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 288
            QHK IPLKTKK+NLFE EMGDILFYHRELF+SCLSKN
Sbjct: 1331 QHKGIPLKTKKKNLFEKEMGDILFYHRELFDSCLSKN 1367

[Close]

BLAST of Spo24719.1 vs. UniProtKB/TrEMBL
Match: A0A0N9LME3_BETVU (DNA-directed RNA polymerase subunit beta'' OS=Beta vulgaris subsp. vulgaris GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 524.6 bits (1350), Expect = 7.400e-146
Identity = 264/281 (93.95%), Postives = 271/281 (96.44%), Query Frame = 1

		  
Query: 7    IYNPDPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 66
            I   D  +IRSAKPYLATPGAT+HGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV
Sbjct: 1077 IVQSDYVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 1136

Query: 67   LEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 126
            LEVRSI+SIS+NL+KRID WNERITRILG PWGF IGAELTIAQSRISLVNKIQKVYRSQ
Sbjct: 1137 LEVRSINSISMNLKKRIDGWNERITRILGIPWGFFIGAELTIAQSRISLVNKIQKVYRSQ 1196

Query: 127  GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL 186
            GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL
Sbjct: 1197 GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL 1256

Query: 187  GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFV 246
            GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFV
Sbjct: 1257 GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFV 1316

Query: 247  HHSSQHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 288
            HHSSQHK IPLKTKK+NLFEGEMGDILFYHRELF+S LSKN
Sbjct: 1317 HHSSQHKGIPLKTKKKNLFEGEMGDILFYHRELFDSFLSKN 1357

[Close]

BLAST of Spo24719.1 vs. UniProtKB/TrEMBL
Match: A0A023ZQ94_BETVU (DNA-directed RNA polymerase subunit OS=Beta vulgaris subsp. vulgaris GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 524.6 bits (1350), Expect = 7.400e-146
Identity = 264/281 (93.95%), Postives = 271/281 (96.44%), Query Frame = 1

		  
Query: 7    IYNPDPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 66
            I   D  +IRSAKPYLATPGAT+HGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV
Sbjct: 1081 IVQSDYVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 1140

Query: 67   LEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 126
            LEVRSI+SIS+NL+KRID WNERITRILG PWGF IGAELTIAQSRISLVNKIQKVYRSQ
Sbjct: 1141 LEVRSINSISMNLKKRIDGWNERITRILGIPWGFFIGAELTIAQSRISLVNKIQKVYRSQ 1200

Query: 127  GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL 186
            GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL
Sbjct: 1201 GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL 1260

Query: 187  GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFV 246
            GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFV
Sbjct: 1261 GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFV 1320

Query: 247  HHSSQHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 288
            HHSSQHK IPLKTKK+NLFEGEMGDILFYHRELF+S LSKN
Sbjct: 1321 HHSSQHKGIPLKTKKKNLFEGEMGDILFYHRELFDSFLSKN 1361

[Close]

BLAST of Spo24719.1 vs. UniProtKB/TrEMBL
Match: A0A159ZTD2_9CARY (DNA-directed RNA polymerase subunit beta OS=Bienertia sinuspersici GN=rpoC2 PE=4 SV=1)

HSP 1 Score: 520.0 bits (1338), Expect = 1.800e-144
Identity = 261/277 (94.22%), Postives = 268/277 (96.75%), Query Frame = 1

		  
Query: 11   DPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 70
            D  +IRSAK YLATPGAT+HGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 1091 DSVVIRSAKAYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1150

Query: 71   SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 130
            SIDSIS+NL KRID WNERITRILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI
Sbjct: 1151 SIDSISMNLAKRIDGWNERITRILGMPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 1210

Query: 131  HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITR 190
            HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRA LLGIT+
Sbjct: 1211 HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRAILLGITK 1270

Query: 191  ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSS 250
            ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVH+SS
Sbjct: 1271 ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHYSS 1330

Query: 251  QHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 288
            QHK IPLKTKK+NLFE EMGDILFYHRELF+SCLSKN
Sbjct: 1331 QHKGIPLKTKKKNLFEKEMGDILFYHRELFDSCLSKN 1367

[Close]

BLAST of Spo24719.1 vs. UniProtKB/TrEMBL
Match: A0A0G2QXB9_SALEU (DNA-directed RNA polymerase subunit beta'' OS=Salicornia europaea GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 517.7 bits (1332), Expect = 9.100e-144
Identity = 259/277 (93.50%), Postives = 267/277 (96.39%), Query Frame = 1

		  
Query: 11   DPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 70
            D  +IRSAK YLATPGAT+HGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 1091 DSVVIRSAKAYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1150

Query: 71   SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 130
            SIDSIS+NL KR+D WNERITRILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI
Sbjct: 1151 SIDSISMNLAKRVDGWNERITRILGMPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 1210

Query: 131  HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITR 190
            HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRA LLGIT+
Sbjct: 1211 HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRAILLGITK 1270

Query: 191  ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSS 250
            ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVH+SS
Sbjct: 1271 ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHYSS 1330

Query: 251  QHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 288
             HK IPLKTKK+NLFE EMGDILFYHRELF+SCLSKN
Sbjct: 1331 DHKGIPLKTKKKNLFEKEMGDILFYHRELFDSCLSKN 1367

[Close]

BLAST of Spo24719.1 vs. UniProtKB/TrEMBL
Match: A0A0G2QXI3_SALBI (DNA-directed RNA polymerase subunit beta'' OS=Salicornia bigelovii GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 517.7 bits (1332), Expect = 9.100e-144
Identity = 259/277 (93.50%), Postives = 267/277 (96.39%), Query Frame = 1

		  
Query: 11   DPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 70
            D  +IRSAK YLATPGAT+HGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 1089 DSVVIRSAKAYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1148

Query: 71   SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 130
            SIDSIS+NL KR+D WNERITRILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI
Sbjct: 1149 SIDSISMNLAKRVDGWNERITRILGMPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 1208

Query: 131  HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITR 190
            HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRA LLGIT+
Sbjct: 1209 HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRAILLGITK 1268

Query: 191  ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSS 250
            ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVH+SS
Sbjct: 1269 ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHYSS 1328

Query: 251  QHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 288
             HK IPLKTKK+NLFE EMGDILFYHRELF+SCLSKN
Sbjct: 1329 DHKGIPLKTKKKNLFEKEMGDILFYHRELFDSCLSKN 1365

[Close]

BLAST of Spo24719.1 vs. ExPASy Swiss-Prot
Match: RPOC2_SPIOL (DNA-directed RNA polymerase subunit beta'' OS=Spinacia oleracea GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 545.4 bits (1404), Expect = 3.600e-154
Identity = 274/277 (98.92%), Postives = 275/277 (99.28%), Query Frame = 1

		  
Query: 11   DPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 70
            D  +IRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 1085 DSVVIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1144

Query: 71   SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 130
            SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI
Sbjct: 1145 SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 1204

Query: 131  HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITR 190
            HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITR
Sbjct: 1205 HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITR 1264

Query: 191  ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSS 250
            ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSS
Sbjct: 1265 ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSS 1324

Query: 251  QHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 288
            QHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN
Sbjct: 1325 QHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 1361

[Close]

BLAST of Spo24719.1 vs. ExPASy Swiss-Prot
Match: RPOC2_EUCGG (DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulus GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 497.7 bits (1280), Expect = 8.700e-140
Identity = 248/280 (88.57%), Postives = 262/280 (93.57%), Query Frame = 1

		  
Query: 7    IYNPDPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 66
            I   D  +IRSAKPYLATPGAT+HGHYGEI+YEGDTLVTFIYEKSRSGDITQGLPKVEQV
Sbjct: 1097 IVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQV 1156

Query: 67   LEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 126
            LEVRSIDSIS+NLEKRI+ WNE I +ILG PWGFLIGAELTI QSRISLVNKIQKVYRSQ
Sbjct: 1157 LEVRSIDSISMNLEKRIEGWNEHIKKILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQ 1216

Query: 127  GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL 186
            GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGL RA RTGRALEE+ICYRA LL
Sbjct: 1217 GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLRAARTGRALEESICYRAILL 1276

Query: 187  GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFV 246
            GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV+GGMIPVGTGFKG V
Sbjct: 1277 GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVIGGMIPVGTGFKGLV 1336

Query: 247  HHSSQHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSK 287
            H S QHK+IPLKTKK+N FEGE+GDILF+HRELF+S +SK
Sbjct: 1337 HRSRQHKNIPLKTKKKNFFEGEIGDILFHHRELFDSSISK 1376

[Close]

BLAST of Spo24719.1 vs. ExPASy Swiss-Prot
Match: RPOC2_NICTO (DNA-directed RNA polymerase subunit beta'' OS=Nicotiana tomentosiformis GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 7.400e-139
Identity = 247/277 (89.17%), Postives = 261/277 (94.22%), Query Frame = 1

		  
Query: 11   DPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 70
            D  +IRSAKPYLATPGAT+HGHYGE +YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 1101 DSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1160

Query: 71   SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI 130
            SIDSIS+NLEKRI+ WN+ ITRILG PWGFLIGAELTIAQSRISLVNKIQ+VYRSQGVQI
Sbjct: 1161 SIDSISMNLEKRIEGWNKCITRILGIPWGFLIGAELTIAQSRISLVNKIQQVYRSQGVQI 1220

Query: 131  HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITR 190
            HNRHIEIIVRQITSKVLVSEDGMSNVF PGELIGL RAER GRALEEAICYR  LLGITR
Sbjct: 1221 HNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERMGRALEEAICYRVVLLGITR 1280

Query: 191  ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSS 250
            ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG+IPVGTGFKG VH S 
Sbjct: 1281 ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPVGTGFKGLVHPSK 1340

Query: 251  QHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 288
            QH +IPL+TKK+NLFEGEM DILF+HR+LF+SCLSKN
Sbjct: 1341 QHNNIPLETKKKNLFEGEMRDILFHHRKLFDSCLSKN 1377

[Close]

BLAST of Spo24719.1 vs. ExPASy Swiss-Prot
Match: RPOC2_PLAOC (DNA-directed RNA polymerase subunit beta'' OS=Platanus occidentalis GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 7.400e-139
Identity = 246/281 (87.54%), Postives = 262/281 (93.24%), Query Frame = 1

		  
Query: 7    IYNPDPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 66
            I + D  +IRSAKPYLATPGAT+HGHYGEI+Y+GDTLVTFIYEKSRSGDITQGLPKVEQV
Sbjct: 1092 IVHVDSLVIRSAKPYLATPGATVHGHYGEILYKGDTLVTFIYEKSRSGDITQGLPKVEQV 1151

Query: 67   LEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 126
            LEVRSIDSIS+ LE R++ WNERITRILG PW +LIGAELTIAQSRISLVNKIQKVYRSQ
Sbjct: 1152 LEVRSIDSISMTLENRVEGWNERITRILGIPWEYLIGAELTIAQSRISLVNKIQKVYRSQ 1211

Query: 127  GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL 186
            GVQIHNRHIEIIVRQITSKVLVSEDGMSNVF PGELIGLFRAERTGRALEEAICYRA LL
Sbjct: 1212 GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLFRAERTGRALEEAICYRAVLL 1271

Query: 187  GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFV 246
            GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKG V
Sbjct: 1272 GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLV 1331

Query: 247  HHSSQHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN 288
            H S +H +IPL+ KK+NLFEGEM D LF+HRELF+SC+ KN
Sbjct: 1332 HRSREHNNIPLEIKKKNLFEGEMRDTLFHHRELFDSCIPKN 1372

[Close]

BLAST of Spo24719.1 vs. ExPASy Swiss-Prot
Match: RPOC2_CHLSC (DNA-directed RNA polymerase subunit beta'' OS=Chloranthus spicatus GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 494.2 bits (1271), Expect = 9.600e-139
Identity = 247/278 (88.85%), Postives = 260/278 (93.53%), Query Frame = 1

		  
Query: 7    IYNPDPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 66
            I + D  +IRSAKP+LATPGAT+HGHYGEI+YEGDTLVTFIYEKSRSGDITQGLPKVEQV
Sbjct: 1092 IVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQV 1151

Query: 67   LEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 126
            LEVRSIDSISINLEKR++ WNERITRI+G PWGFLIGAELTIAQSRISLVNKIQKVYRSQ
Sbjct: 1152 LEVRSIDSISINLEKRVEGWNERITRIIGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 1211

Query: 127  GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL 186
            GVQIHNRHIEIIVRQITSKVLVSEDGMSNVF PGELIGL RAERTGRALEEAICYRA LL
Sbjct: 1212 GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILL 1271

Query: 187  GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFV 246
            GITR SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKG V
Sbjct: 1272 GITRTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLV 1331

Query: 247  HHSSQHKDIPLKTKKQNLFEGEMGDILFYHRELFESCL 285
            H S QH + PL+ KK+NLFEGEM DILF+HRELF SC+
Sbjct: 1332 HRSRQHNNSPLEIKKKNLFEGEMRDILFHHRELFGSCI 1369

[Close]

BLAST of Spo24719.1 vs. TAIR (Arabidopsis)
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein)

HSP 1 Score: 466.8 bits (1200), Expect = 9.300e-132
Identity = 242/284 (85.21%), Postives = 254/284 (89.44%), Query Frame = 1

		  
Query: 7    IYNPDPCIIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 66
            I   D  +IRSAKPYLATPGA +HGHY EI+YEGDTLVTFIYEKSRSGDITQGLPKVEQV
Sbjct: 1088 IVQRDSAVIRSAKPYLATPGAKVHGHYSEILYEGDTLVTFIYEKSRSGDITQGLPKVEQV 1147

Query: 67   LEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQ 126
            LEVRSIDSIS+NLEKRI  WN+ ITRILG PWGFLIGAELTI QSRISLVNKIQKVYRSQ
Sbjct: 1148 LEVRSIDSISLNLEKRIKGWNKCITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQ 1207

Query: 127  GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLL 186
            GVQIHNRHIEIIVRQITSKVLVSE+GMSNVFLPGELIGL RAERTGRALEEAICYRA LL
Sbjct: 1208 GVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLL 1267

Query: 187  GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGF-KGF 246
            GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG+IP GTGF KG 
Sbjct: 1268 GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPAGTGFNKGL 1327

Query: 247  VHHSSQHKDIPL--KTKKQNLFEGEMGDILFYHRELFESCLSKN 288
            VH S QH +I L  KTK   LFEG+M DILFYHRE  +S +SK+
Sbjct: 1328 VHCSRQHTNIILEKKTKNLALFEGDMRDILFYHREFCDSSISKS 1371

[Close]

BLAST of Spo24719.1 vs. TAIR (Arabidopsis)
Match: AT4G35800.1 (RNA polymerase II large subunit)

HSP 1 Score: 50.4 bits (119), Expect = 2.100e-6
Identity = 25/67 (37.31%), Postives = 38/67 (56.72%), Query Frame = 1

		  
Query: 177  EAICYRATLLGITRASLNTQSF--ISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG 236
            + + YR  L+ ITR  +N      +   SF+ET  +L  AA     D L+G+ EN++LG 
Sbjct: 1394 DTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQ 1453

Query: 237  MIPVGTG 242
            + P+GTG
Sbjct: 1454 LAPIGTG 1460

The following BLAST results are available for this feature:

BLAST of Spo24719.1 vs. NCBI nr
BLAST of Spo24719.1 vs. UniProtKB/TrEMBL
BLAST of Spo24719.1 vs. ExPASy Swiss-Prot
BLAST of Spo24719.1 vs. TAIR (Arabidopsis)

BLAST of Spo24719.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|126022792\|ref\|NP_054922.2\|	5.8e-152	98.9	RNA polymerase beta'' subunit ...	[more]
gi\|133448\|sp\|P11704.1\|RPOC2_SPIOL	5.8e-152	98.9	RecName: Full=DNA-directed RNA...	[more]
gi\|932252323\|gb\|ALG63279.1\|	1.1e-145	93.9	RNA polymerase beta'' subunit ...	[more]
gi\|628819098\|gb\|AHY80531.1\|	1.1e-145	93.9	RNA polymerase beta' subunit (...	[more]
gi\|1020267074\|gb\|AMZ03425.1\|	2.6e-144	94.2	DNA-directed RNA polymerase su...	[more]

BLAST of Spo24719.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
A0A0N9LME3_BETVU	7.4e-146	93.9	DNA-directed RNA polymerase su...	[more]
A0A023ZQ94_BETVU	7.4e-146	93.9	DNA-directed RNA polymerase su...	[more]
A0A159ZTD2_9CARY	1.8e-144	94.2	DNA-directed RNA polymerase su...	[more]
A0A0G2QXB9_SALEU	9.1e-144	93.5	DNA-directed RNA polymerase su...	[more]
A0A0G2QXI3_SALBI	9.1e-144	93.5	DNA-directed RNA polymerase su...	[more]

BLAST of Spo24719.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
RPOC2_SPIOL	3.6e-154	98.9	DNA-directed RNA polymerase su...	[more]
RPOC2_EUCGG	8.7e-140	88.5	DNA-directed RNA polymerase su...	[more]
RPOC2_NICTO	7.4e-139	89.1	DNA-directed RNA polymerase su...	[more]
RPOC2_PLAOC	7.4e-139	87.5	DNA-directed RNA polymerase su...	[more]
RPOC2_CHLSC	9.6e-139	88.8	DNA-directed RNA polymerase su...	[more]

BLAST of Spo24719.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

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x 1


Match Name	E-value	Identity	Description
ATCG00170.1	9.3e-132	85.2	DNA-directed RNA polymerase fa...	[more]
AT4G35800.1	2.1e-6	37.3	RNA polymerase II large subuni...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007081	RNA polymerase Rpb1, domain 5	PFAM	PF04998	RNA_pol_Rpb1_5	coord: 106..194 score: 2.
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 182..287 score: 1.9E-124coord: 6..144 score: 1.9E
None	No IPR available	PANTHER	PTHR19376:SF38	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''	coord: 182..287 score: 1.9E-124coord: 6..144 score: 1.9E
None	No IPR available	unknown	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 52..255 score: 1.07

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006096	glycolytic process
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:1902600	proton transmembrane transport
biological_process	GO:0046487	glyoxylate metabolic process
biological_process	GO:0034968	histone lysine methylation
biological_process	GO:0006554	lysine catabolic process
biological_process	GO:0009853	photorespiration
biological_process	GO:0019253	reductive pentose-phosphate cycle
biological_process	GO:0006972	hyperosmotic response
biological_process	GO:0007030	Golgi organization
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0006119	oxidative phosphorylation
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0015074	DNA integration
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0006810	transport
biological_process	GO:0006744	ubiquinone biosynthetic process
biological_process	GO:0006814	sodium ion transport
biological_process	GO:0015991	ATP hydrolysis coupled proton transport
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0009409	response to cold
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0009769	photosynthesis, light harvesting in photosystem II
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0006833	water transport
biological_process	GO:0009651	response to salt stress
biological_process	GO:0015979	photosynthesis
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
cellular_component	GO:0010287	plastoglobule
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0031361	integral component of thylakoid membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0030076	light-harvesting complex
cellular_component	GO:0019773	proteasome core complex, alpha-subunit complex
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0048046	apoplast
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009573	chloroplast ribulose bisphosphate carboxylase complex
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0032549	ribonucleoside binding
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0045157	electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism
molecular_function	GO:0048038	quinone binding
molecular_function	GO:0018024	histone-lysine N-methyltransferase activity
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity
molecular_function	GO:0030785	[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity
molecular_function	GO:0046961	proton-transporting ATPase activity, rotational mechanism
molecular_function	GO:0008777	acetylornithine deacetylase activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0050136	NADH dehydrogenase (quinone) activity
molecular_function	GO:0004298	threonine-type endopeptidase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo17925	0.90	Barchart \| Table
Spo19561	0.86	Barchart \| Table
Spo22572	0.85	Barchart \| Table
Spo19560	0.81	Barchart \| Table
Spo24718	0.81	Barchart \| Table
Spo06201	0.78	Barchart \| Table
Spo00626	0.77	Barchart \| Table
Spo10627	0.77	Barchart \| Table
Spo04277	0.77	Barchart \| Table
Spo17010	0.77	Barchart \| Table
Spo05875	0.76	Barchart \| Table
Spo02851	0.76	Barchart \| Table
Spo17924	0.76	Barchart \| Table
Spo24708	0.76	Barchart \| Table
Spo25538	0.75	Barchart \| Table
Spo06200	0.75	Barchart \| Table
Spo24707	0.75	Barchart \| Table
Spo17923	0.75	Barchart \| Table
Spo26126	0.75	Barchart \| Table
Spo22445	0.74	Barchart \| Table
Spo25555	0.74	Barchart \| Table
Spo24717	0.74	Barchart \| Table
Spo04278	0.73	Barchart \| Table
Spo22573	0.73	Barchart \| Table
Spo08440	0.73	Barchart \| Table
Spo13957	0.72	Barchart \| Table
Spo16485	0.72	Barchart \| Table
Spo18044	0.72	Barchart \| Table
Spo26127	0.72	Barchart \| Table
Spo11904	0.72	Barchart \| Table
Spo16490	0.71	Barchart \| Table
Spo25004	0.71	Barchart \| Table
Spo01748	0.71	Barchart \| Table
Spo11124	0.70	Barchart \| Table
Spo16484	0.70	Barchart \| Table
Spo09413	0.70	Barchart \| Table
Spo16895	0.69	Barchart \| Table
Spo17927	0.69	Barchart \| Table
Spo19336	0.67	Barchart \| Table
Spo23916	0.67	Barchart \| Table
Spo21946	0.66	Barchart \| Table
Spo25537	0.66	Barchart \| Table
Spo13959	0.66	Barchart \| Table
Spo06757	0.65	Barchart \| Table
Spo22439	0.65	Barchart \| Table