Spo24754 (gene)

Overview
NameSpo24754
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionHistone H2A
LocationSpoScf_00257 : 378859 .. 380236 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCCTTTCAACCAATCAAAATGCAGGATATCCCCTTATATAAACCAAACTCATCTCTCTCACCATAAACCCTGATTTCCCTGTCACACCAACAACGCACTATCTTCCTCCTACCTATTTCTCTCGATCACTTTCTCTCTCCTAGGGTTCTGATCATCGTTAGATTTCCGGCATAAAAATGAGCGGTAAAGAAGGCGGCGGATCCACCAAGGGAGGCAGAGGAAAGCCTAAAGCTTCAAAATCGGTTTCGAGGTCTTCCAAAGCCGGTCTGCAGTTCCCCGTCGGTAGGATCGCTAGATTTTTGAAGGCCGGAAAGTATGCTGAGCGTGTTGGTGCTGGTGCTCCAGTCTATCTCTCCGCCGTCCTTGAGTATCTCGCTGCTGAGGTACCTCACTTTCTCCCTTTTTCGAGTTTATGCTAAATCAATTAAATCTGCGGAAGTCTGTAGATCGATTTTGATTTCGTTTTTTTTGTTTGGCGTTGATTGATTATTTGATTTTAAATGAAATTTCAAGATCTAATTTCTCATGATTTGCTGTTGATTGATGTTCAATTAGCAGTCCTGATGAATTAACTTAGTTGCATAATAGCCGAAGTGTCTGATTTTAATTCATAGCCTCTGTTTAATTCTCAATCCATCATTTTCCAATTGATTGAAATATGTATGTTTCTCTGATTTCATAATAATATTACAACACTTGTTTTATATCAATCAATTGCAACGATCATAGATGATTATAGTGGCATTTAATTTCAGTTATGTCAATCTTTATGAAATTAGTGACTGTAGGGTTTGTTCTAATTAATTGAAAATGTTAACAGGTATTGGAGTTGGCTGGAAACGCAGCAAGAGACAACAAGAAGTCAAGAATAGTACCGCGTCACATTCAATTAGCAGTGAGGAACGATGAGGAATTAAGCAAGCTTTTGGGTCAAGTAACAATCGCAAACGGCGGGGTATTGCCCAACATTAATCCGACTCTTCTGCCCAGGAAGCTAGCGGGCGGTGGTAAAGACAATAATACTCTATCTCAAGAGTTCTAGACATGTTTCGGATGTACTTTAGAAAGAGTTATAATTAGTGCTTATTTTCAATGGAGTTATGGGTTTGATTATTCCCCTTTTTTTGTTCTTAATATAGCAGGGGTTATAATGTTGGTGTAATGTAGTAGTCCGTGGAATTTGATAAGCTTCTTTTATATGGAAAATTTGTTAAAATTCGCGCATATTTTTTTTGTTGGTGTCACTGACTCACTTTGAAAGCATATTCTGAAATTATTCAATGACTGTCACTGTAATTTTTTTTTTTGGTTAAAATTTACTGTAATTAGTTGATGTTGGGATGATATGAAATAATGATCAAAAGGTTCATTTGCAG

mRNA sequence

CTCCCTTTCAACCAATCAAAATGCAGGATATCCCCTTATATAAACCAAACTCATCTCTCTCACCATAAACCCTGATTTCCCTGTCACACCAACAACGCACTATCTTCCTCCTACCTATTTCTCTCGATCACTTTCTCTCTCCTAGGGTTCTGATCATCGTTAGATTTCCGGCATAAAAATGAGCGGTAAAGAAGGCGGCGGATCCACCAAGGGAGGCAGAGGAAAGCCTAAAGCTTCAAAATCGGTTTCGAGGTCTTCCAAAGCCGGTCTGCAGTTCCCCGTCGGTAGGATCGCTAGATTTTTGAAGGCCGGAAAGTATGCTGAGCGTGTTGGTGCTGGTGCTCCAGTCTATCTCTCCGCCGTCCTTGAGTATCTCGCTGCTGAGGTATTGGAGTTGGCTGGAAACGCAGCAAGAGACAACAAGAAGTCAAGAATAGTACCGCGTCACATTCAATTAGCAGTGAGGAACGATGAGGAATTAAGCAAGCTTTTGGGTCAAGTAACAATCGCAAACGGCGGGGTATTGCCCAACATTAATCCGACTCTTCTGCCCAGGAAGCTAGCGGGCGGTGGTAAAGACAATAATACTCTATCTCAAGAGTTCTAGACATGTTTCGGATGTACTTTAGAAAGAGTTATAATTAGTGCTTATTTTCAATGGAGTTATGGGTTTGATTATTCCCCTTTTTTTGTTCTTAATATAGCAGGGGTTATAATGTTGGTGTAATGTAGTAGTCCGTGGAATTTGATAAGCTTCTTTTATATGGAAAATTTGTTAAAATTCGCGCATATTTTTTTTGTTGGTGTCACTGACTCACTTTGAAAGCATATTCTGAAATTATTCAATGACTGTCACTGTAATTTTTTTTTTTGGTTAAAATTTACTGTAATTAGTTGATGTTGGGATGATATGAAATAATGATCAAAAGGTTCATTTGCAG

Coding sequence (CDS)

ATGAGCGGTAAAGAAGGCGGCGGATCCACCAAGGGAGGCAGAGGAAAGCCTAAAGCTTCAAAATCGGTTTCGAGGTCTTCCAAAGCCGGTCTGCAGTTCCCCGTCGGTAGGATCGCTAGATTTTTGAAGGCCGGAAAGTATGCTGAGCGTGTTGGTGCTGGTGCTCCAGTCTATCTCTCCGCCGTCCTTGAGTATCTCGCTGCTGAGGTATTGGAGTTGGCTGGAAACGCAGCAAGAGACAACAAGAAGTCAAGAATAGTACCGCGTCACATTCAATTAGCAGTGAGGAACGATGAGGAATTAAGCAAGCTTTTGGGTCAAGTAACAATCGCAAACGGCGGGGTATTGCCCAACATTAATCCGACTCTTCTGCCCAGGAAGCTAGCGGGCGGTGGTAAAGACAATAATACTCTATCTCAAGAGTTCTAG

Protein sequence

MSGKEGGGSTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGQVTIANGGVLPNINPTLLPRKLAGGGKDNNTLSQEF
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo24754.1Spo24754.1mRNA


Homology
[Close]
BLAST of Spo24754.1 vs. NCBI nr
Match: gi|902174491|gb|KNA08418.1| (hypothetical protein SOVF_162780 [Spinacia oleracea])

HSP 1 Score: 268.5 bits (685), Expect = 6.800e-69
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

		  

Query: 1   MSGKEGGGSTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60
           MSGKEGGGSTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS
Sbjct: 1   MSGKEGGGSTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60

Query: 61  AVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGQVTIANGGVLPNIN 120
           AVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGQVTIANGGVLPNIN
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGQVTIANGGVLPNIN 120

Query: 121 PTLLPRKLAGGGKDNNTLSQEF 143
           PTLLPRKLAGGGKDNNTLSQEF
Sbjct: 121 PTLLPRKLAGGGKDNNTLSQEF 142
[Close]
BLAST of Spo24754.1 vs. NCBI nr
Match: gi|743910741|ref|XP_011048890.1| (PREDICTED: histone H2AX [Populus euphratica])

HSP 1 Score: 232.3 bits (591), Expect = 5.400e-58
Identity = 125/142 (88.03%), Postives = 130/142 (91.55%), Query Frame = 1 

		  

Query: 1   MSGKEGGGSTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60
           MS KEGG STKGGRGKPKASKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS
Sbjct: 1   MSSKEGGASTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60

Query: 61  AVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGQVTIANGGVLPNIN 120
           AVLEYLAAEVLELAGNAARDNKK+RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNI+
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 120

Query: 121 PTLLPRKLAGGGKDNNTLSQEF 143
            TLLP+K+  G  D  + SQEF
Sbjct: 121 QTLLPKKIGKGKGDIGSASQEF 142
[Close]
BLAST of Spo24754.1 vs. NCBI nr
Match: gi|743829393|ref|XP_011023506.1| (PREDICTED: histone H2AX-like [Populus euphratica])

HSP 1 Score: 232.3 bits (591), Expect = 5.400e-58
Identity = 125/142 (88.03%), Postives = 130/142 (91.55%), Query Frame = 1 

		  

Query: 1   MSGKEGGGSTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60
           MS KEGG STKGGRGKPKASKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS
Sbjct: 1   MSSKEGGASTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60

Query: 61  AVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGQVTIANGGVLPNIN 120
           AVLEYLAAEVLELAGNAARDNKK+RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNI+
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 120

Query: 121 PTLLPRKLAGGGKDNNTLSQEF 143
            TLLP+K+  G  D  + SQEF
Sbjct: 121 QTLLPKKMGKGKGDIGSASQEF 142
[Close]
BLAST of Spo24754.1 vs. NCBI nr
Match: gi|255542492|ref|XP_002512309.1| (PREDICTED: histone H2AX [Ricinus communis])

HSP 1 Score: 231.9 bits (590), Expect = 7.100e-58
Identity = 123/136 (90.44%), Postives = 128/136 (94.12%), Query Frame = 1 

		  

Query: 7   GGSTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 66
           GGSTKGGRGKPKASKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL
Sbjct: 5   GGSTKGGRGKPKASKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 64

Query: 67  AAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGQVTIANGGVLPNINPTLLPR 126
           AAEVLELAGNAARDNKK+RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNI+ TLLP+
Sbjct: 65  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 124

Query: 127 KLAGGGKDNNTLSQEF 143
           K+  G  D N+LSQEF
Sbjct: 125 KIGKGKGDMNSLSQEF 140
[Close]
BLAST of Spo24754.1 vs. NCBI nr
Match: gi|566169383|ref|XP_006382663.1| (histone H2A family protein [Populus trichocarpa])

HSP 1 Score: 231.9 bits (590), Expect = 7.100e-58
Identity = 125/142 (88.03%), Postives = 130/142 (91.55%), Query Frame = 1 

		  

Query: 1   MSGKEGGGSTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60
           MS KEGG STKGGRGKPKASKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS
Sbjct: 1   MSSKEGGASTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60

Query: 61  AVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGQVTIANGGVLPNIN 120
           AVLEYLAAEVLELAGNAARDNKK+RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNI+
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 120

Query: 121 PTLLPRKLAGGGKDNNTLSQEF 143
            TLLP+K+  G  D  + SQEF
Sbjct: 121 QTLLPKKVGKGKGDIGSASQEF 142
[Close]
BLAST of Spo24754.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QP00_SPIOL (Histone H2A OS=Spinacia oleracea GN=SOVF_162780 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 4.700e-69
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

		  

Query: 1   MSGKEGGGSTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60
           MSGKEGGGSTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS
Sbjct: 1   MSGKEGGGSTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60

Query: 61  AVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGQVTIANGGVLPNIN 120
           AVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGQVTIANGGVLPNIN
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGQVTIANGGVLPNIN 120

Query: 121 PTLLPRKLAGGGKDNNTLSQEF 143
           PTLLPRKLAGGGKDNNTLSQEF
Sbjct: 121 PTLLPRKLAGGGKDNNTLSQEF 142
[Close]
BLAST of Spo24754.1 vs. UniProtKB/TrEMBL
Match: B9MZP0_POPTR (Histone H2A OS=Populus trichocarpa GN=POPTR_0005s04260g PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.900e-58
Identity = 125/142 (88.03%), Postives = 130/142 (91.55%), Query Frame = 1 

		  

Query: 1   MSGKEGGGSTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60
           MS KEGG STKGGRGKPKASKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS
Sbjct: 1   MSSKEGGASTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60

Query: 61  AVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGQVTIANGGVLPNIN 120
           AVLEYLAAEVLELAGNAARDNKK+RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNI+
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 120

Query: 121 PTLLPRKLAGGGKDNNTLSQEF 143
            TLLP+K+  G  D  + SQEF
Sbjct: 121 QTLLPKKVGKGKGDIGSASQEF 142
[Close]
BLAST of Spo24754.1 vs. UniProtKB/TrEMBL
Match: B9REZ0_RICCO (Histone H2A OS=Ricinus communis GN=RCOM_1429760 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.900e-58
Identity = 123/136 (90.44%), Postives = 128/136 (94.12%), Query Frame = 1 

		  

Query: 7   GGSTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 66
           GGSTKGGRGKPKASKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL
Sbjct: 5   GGSTKGGRGKPKASKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 64

Query: 67  AAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGQVTIANGGVLPNINPTLLPR 126
           AAEVLELAGNAARDNKK+RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNI+ TLLP+
Sbjct: 65  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 124

Query: 127 KLAGGGKDNNTLSQEF 143
           K+  G  D N+LSQEF
Sbjct: 125 KIGKGKGDMNSLSQEF 140
[Close]
BLAST of Spo24754.1 vs. UniProtKB/TrEMBL
Match: B9I828_POPTR (Histone H2A OS=Populus trichocarpa GN=POPTR_0013s02990g PE=3 SV=2)

HSP 1 Score: 231.5 bits (589), Expect = 6.400e-58
Identity = 124/142 (87.32%), Postives = 130/142 (91.55%), Query Frame = 1 

		  

Query: 1   MSGKEGGGSTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60
           MS KEGG STKGGRGKPKASKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+
Sbjct: 44  MSSKEGGASTKGGRGKPKASKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLA 103

Query: 61  AVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGQVTIANGGVLPNIN 120
           AVLEYLAAEVLELAGNAARDNKK+RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNI+
Sbjct: 104 AVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 163

Query: 121 PTLLPRKLAGGGKDNNTLSQEF 143
            TLLP+K+  G  D  + SQEF
Sbjct: 164 QTLLPKKMGKGKGDIGSASQEF 185
[Close]
BLAST of Spo24754.1 vs. UniProtKB/TrEMBL
Match: A0A059B728_EUCGR (Histone H2A OS=Eucalyptus grandis GN=EUGRSUZ_H04433 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.400e-57
Identity = 123/142 (86.62%), Postives = 129/142 (90.85%), Query Frame = 1 

		  

Query: 1   MSGKEGGGSTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60
           MS KEGGG  KGGRGKPK+SKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS
Sbjct: 1   MSSKEGGGGGKGGRGKPKSSKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60

Query: 61  AVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGQVTIANGGVLPNIN 120
           AVLEYLAAEVLELAGNAARDNKK+RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNI+
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 120

Query: 121 PTLLPRKLAGGGKDNNTLSQEF 143
            TLLP+K+  G  D  + SQEF
Sbjct: 121 QTLLPKKMGKGKGDIGSASQEF 142
[Close]
BLAST of Spo24754.1 vs. ExPASy Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.100e-57
Identity = 121/142 (85.21%), Postives = 127/142 (89.44%), Query Frame = 1 

		  

Query: 1   MSGKEGGGSTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60
           MS   G G+TKGGRGKPKA+KSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS
Sbjct: 1   MSSGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60

Query: 61  AVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGQVTIANGGVLPNIN 120
           AVLEYLAAEVLELAGNAARDNKK+RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNI+
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 120

Query: 121 PTLLPRKLAGGGKDNNTLSQEF 143
            TLLP K+     D  + SQEF
Sbjct: 121 QTLLPSKVGKNKGDIGSASQEF 142
[Close]
BLAST of Spo24754.1 vs. ExPASy Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 7.800e-57
Identity = 120/142 (84.51%), Postives = 127/142 (89.44%), Query Frame = 1 

		  

Query: 1   MSGKEGGGSTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60
           MS   G G+TKGGRGKPKA+KSVSRSSKAGLQFPVGRIARFLK+GKYAERVGAGAPVYLS
Sbjct: 1   MSTGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLS 60

Query: 61  AVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGQVTIANGGVLPNIN 120
           AVLEYLAAEVLELAGNAARDNKK+RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNI+
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 120

Query: 121 PTLLPRKLAGGGKDNNTLSQEF 143
            TLLP K+     D  + SQEF
Sbjct: 121 QTLLPSKVGKNKGDIGSASQEF 142
[Close]
BLAST of Spo24754.1 vs. ExPASy Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.300e-56
Identity = 117/134 (87.31%), Postives = 124/134 (92.54%), Query Frame = 1 

		  

Query: 9   STKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 68
           +TKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 6   TTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 65

Query: 69  EVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGQVTIANGGVLPNINPTLLPRKL 128
           EVLELAGNAARDNK +RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNI+ TLLP+K+
Sbjct: 66  EVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 125

Query: 129 AGGGKDNNTLSQEF 143
             G  +  + SQEF
Sbjct: 126 GKGKGEIGSASQEF 139
[Close]
BLAST of Spo24754.1 vs. ExPASy Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.600e-52
Identity = 110/132 (83.33%), Postives = 118/132 (89.39%), Query Frame = 1 

		  

Query: 11  KGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 70
           KGGRGK K++KSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAAEV
Sbjct: 7   KGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEV 66

Query: 71  LELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGQVTIANGGVLPNINPTLLPRKLAG 130
           LELAGNAARDNKK+RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNI+  LLP+K   
Sbjct: 67  LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKSGK 126

Query: 131 GGKDNNTLSQEF 143
              +  + SQEF
Sbjct: 127 DKGEIGSASQEF 138
[Close]
BLAST of Spo24754.1 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 3.400e-52
Identity = 117/140 (83.57%), Postives = 123/140 (87.86%), Query Frame = 1 

		  

Query: 6   GGGSTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEY 65
           GGG   GGRGK K SKSVSRSSKAGLQFPVGRIAR+LKAGKYAERVGAGAPVYLSAVLEY
Sbjct: 5   GGG---GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEY 64

Query: 66  LAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGQVTIANGGVLPNINPTLLP 125
           LAAEVLELAGNAARDNKK+RIVPRHIQLAVRNDEELS+LLG VTIA GGVLPNI+ TLLP
Sbjct: 65  LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLP 124

Query: 126 RKLAGGGKDN---NTLSQEF 143
           +K   GGKD     + SQEF
Sbjct: 125 KK---GGKDKADIGSASQEF 138
[Close]
BLAST of Spo24754.1 vs. TAIR (Arabidopsis)
Match: AT1G54690.1 (gamma histone variant H2AX)

HSP 1 Score: 223.0 bits (567), Expect = 1.200e-58
Identity = 121/142 (85.21%), Postives = 127/142 (89.44%), Query Frame = 1 

		  

Query: 1   MSGKEGGGSTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60
           MS   G G+TKGGRGKPKA+KSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS
Sbjct: 1   MSSGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60

Query: 61  AVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGQVTIANGGVLPNIN 120
           AVLEYLAAEVLELAGNAARDNKK+RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNI+
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 120

Query: 121 PTLLPRKLAGGGKDNNTLSQEF 143
            TLLP K+     D  + SQEF
Sbjct: 121 QTLLPSKVGKNKGDIGSASQEF 142
[Close]
BLAST of Spo24754.1 vs. TAIR (Arabidopsis)
Match: AT1G08880.1 (Histone superfamily protein)

HSP 1 Score: 221.1 bits (562), Expect = 4.400e-58
Identity = 120/142 (84.51%), Postives = 127/142 (89.44%), Query Frame = 1 

		  

Query: 1   MSGKEGGGSTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60
           MS   G G+TKGGRGKPKA+KSVSRSSKAGLQFPVGRIARFLK+GKYAERVGAGAPVYLS
Sbjct: 1   MSTGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLS 60

Query: 61  AVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGQVTIANGGVLPNIN 120
           AVLEYLAAEVLELAGNAARDNKK+RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNI+
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 120

Query: 121 PTLLPRKLAGGGKDNNTLSQEF 143
            TLLP K+     D  + SQEF
Sbjct: 121 QTLLPSKVGKNKGDIGSASQEF 142
[Close]
BLAST of Spo24754.1 vs. TAIR (Arabidopsis)
Match: AT4G27230.1 (histone H2A 2)

HSP 1 Score: 191.0 bits (484), Expect = 4.900e-49
Identity = 106/125 (84.80%), Postives = 111/125 (88.80%), Query Frame = 1 

		  

Query: 13  GRGKP----KASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 72
           GRGK      A KS SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 73  EVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGQVTIANGGVLPNINPTLLPRKL 132
           EVLELAGNAARDNKK+RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNI+  LLP+K 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKK- 122

Query: 133 AGGGK 134
           AG  K
Sbjct: 123 AGSSK 126
[Close]
BLAST of Spo24754.1 vs. TAIR (Arabidopsis)
Match: AT5G54640.1 (Histone superfamily protein)

HSP 1 Score: 188.7 bits (478), Expect = 2.400e-48
Identity = 106/128 (82.81%), Postives = 112/128 (87.50%), Query Frame = 1 

		  

Query: 6   GGGSTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEY 65
           G G T G  G   A K+ SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEY
Sbjct: 3   GRGKTLGSGG---AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEY 62

Query: 66  LAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGQVTIANGGVLPNINPTLLP 125
           LAAEVLELAGNAARDNKK+RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNI+  LLP
Sbjct: 63  LAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLP 122

Query: 126 RKLAGGGK 134
           +K AG  K
Sbjct: 123 KK-AGASK 126
[Close]
BLAST of Spo24754.1 vs. TAIR (Arabidopsis)
Match: AT1G51060.1 (histone H2A 10)

HSP 1 Score: 186.4 bits (472), Expect = 1.200e-47
Identity = 100/119 (84.03%), Postives = 107/119 (89.92%), Query Frame = 1 

		  

Query: 13  GRGKP----KASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 72
           GRGK      A K+ +RSSKAGLQFPVGRIARFLK GKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 73  EVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGQVTIANGGVLPNINPTLLPRK 128
           EVLELAGNAARDNKK+RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNI+  LLP+K
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKK 121
The following BLAST results are available for this feature:
BLAST of Spo24754.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902174491|gb|KNA08418.1|6.8e-69100.hypothetical protein SOVF_1627... [more]
gi|743910741|ref|XP_011048890.1|5.4e-5888.0PREDICTED: histone H2AX [Popul... [more]
gi|743829393|ref|XP_011023506.1|5.4e-5888.0PREDICTED: histone H2AX-like [... [more]
gi|255542492|ref|XP_002512309.1|7.1e-5890.4PREDICTED: histone H2AX [Ricin... [more]
gi|566169383|ref|XP_006382663.1|7.1e-5888.0histone H2A family protein [Po... [more]
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BLAST of Spo24754.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QP00_SPIOL4.7e-69100.Histone H2A OS=Spinacia olerac... [more]
B9MZP0_POPTR4.9e-5888.0Histone H2A OS=Populus trichoc... [more]
B9REZ0_RICCO4.9e-5890.4Histone H2A OS=Ricinus communi... [more]
B9I828_POPTR6.4e-5887.3Histone H2A OS=Populus trichoc... [more]
A0A059B728_EUCGR2.4e-5786.6Histone H2A OS=Eucalyptus gran... [more]
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BLAST of Spo24754.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
H2AXB_ARATH2.1e-5785.2Probable histone H2AXb OS=Arab... [more]
H2AXA_ARATH7.8e-5784.5Probable histone H2AXa OS=Arab... [more]
H2AX_CICAR1.3e-5687.3Histone H2AX OS=Cicer arietinu... [more]
H2AX_PICAB2.6e-5283.3Histone H2AX OS=Picea abies PE... [more]
H2AXB_ORYSI3.4e-5283.5Probable histone H2AXb OS=Oryz... [more]
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BLAST of Spo24754.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT1G54690.11.2e-5885.2gamma histone variant H2AX[more]
AT1G08880.14.4e-5884.5Histone superfamily protein[more]
AT4G27230.14.9e-4984.8histone H2A 2[more]
AT5G54640.12.4e-4882.8Histone superfamily protein[more]
AT1G51060.11.2e-4784.0histone H2A 10[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 107..125
score: 2.0E-52coord: 65..78
score: 2.0E-52coord: 79..93
score: 2.0E-52coord: 21..43
score: 2.0E-52coord: 50..65
score: 2.0
IPR002119Histone H2ASMARTSM00414h2a4coord: 10..130
score: 6.1
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 17..96
score: 2.0
IPR009072Histone-foldGENE3D1.10.20.10coord: 14..127
score: 1.3
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 14..131
score: 3.29
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 7..142
score: 4.8E

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0006334 nucleosome assembly
biological_process GO:0051788 response to misfolded protein
biological_process GO:0046686 response to cadmium ion
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:0006096 glycolytic process
biological_process GO:0008283 cell proliferation
biological_process GO:0006094 gluconeogenesis
biological_process GO:0009407 toxin catabolic process
biological_process GO:0006635 fatty acid beta-oxidation
biological_process GO:0009414 response to water deprivation
biological_process GO:0006275 regulation of DNA replication
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0009987 cellular process
biological_process GO:0000338 protein deneddylation
biological_process GO:0001731 formation of translation preinitiation complex
biological_process GO:0009651 response to salt stress
biological_process GO:0009640 photomorphogenesis
biological_process GO:0006007 glucose catabolic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0006810 transport
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0006457 protein folding
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0019643 reductive tricarboxylic acid cycle
biological_process GO:0006090 pyruvate metabolic process
biological_process GO:0006108 malate metabolic process
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0044262 cellular carbohydrate metabolic process
biological_process GO:0042742 defense response to bacterium
cellular_component GO:0042575 DNA polymerase complex
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
cellular_component GO:0033290 eukaryotic 48S preinitiation complex
cellular_component GO:0016282 eukaryotic 43S preinitiation complex
cellular_component GO:0005618 cell wall
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005839 proteasome core complex
cellular_component GO:0000786 nucleosome
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0009536 plastid
cellular_component GO:0005840 ribosome
cellular_component GO:0005737 cytoplasm
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0048046 apoplast
cellular_component GO:0005829 cytosol
cellular_component GO:0005853 eukaryotic translation elongation factor 1 complex
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005773 vacuole
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0016020 membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0005634 nucleus
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005730 nucleolus
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0009579 thylakoid
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0030060 L-malate dehydrogenase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0004298 threonine-type endopeptidase activity
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0004386 helicase activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0030337 DNA polymerase processivity factor activity
molecular_function GO:0003676 nucleic acid binding
RNA-Seq Expression