Spo24797 (gene) | SpinachBase

Overview


Name	Spo24797
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr3 : 91210804 .. 91211810 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCAGGAAATCAAGGTTATAATGGTATTGAAGTAGAGGGGAAGGAAATAAAACGATTAGTACAGATTGTGATATATTATTTGGAGGGTCAAGATTCATCCAAATCAATGGTGAAGATGAAGGTTCTCACCATAAGAAAAAATCTCGCCGTAAGGTGGTTCTCATGTGAACCTATATATATATATATATATATATATATATTAGACTAAAATTATTATTACTTTTCGTATTATCGAAACAAAAAGTGAATTAAAATATTTTTCATTTTTTTAAGTAAATTAGGATTCCCCTCATAAAAAAGGAAAAAAATTGAAGTTTTTTTTTTTTTTTTGAAAGATAAGAAAAACTACCGAAAAAAAAATTTAAGAAAAAAAGTGAATTAGGATAAAGTTGTATTGCCAAAATAAAAGGATAAAGGATAAATATTTATTCTCCCTCAAAAACGAAAAGAAAGATTCAATGAACCAGTAACCACCTAAGCTTCCTAGTTTCCTCCTTCTACACAACTTCGTTCTCCCTCTTATATAATGGCGTAATTCCCCAATTTCGCCCTCTTTCTGGAGAGAGATTGGCGTCTAACACACGATTTCTGAAATTTTCAGCGAACCCCAAATTTCTTCCTTCATTTTGTATCGTCAAATCTCAGGTACCCAACTGCTCCTTTCTTTGTTGAATTTCTCTCTTATCCTAAGTTTCTTGATCAAGTAATTTTTTAGGCTTCTCAATCTTTCTTGATGGTATCATAGATTAGTAAGGTGTTAATTTTGGTTCTTTATGGTACAACTTTAACCTGATAAGATCATGTTTTGATTTTGAATTTCCAATTCAATTAAACCTAATCATGGTTTTTCAGTTGATTTTTTTTGTCAATGATTGATTTCGTTAATCAAATTGCTATTTACTCCGTCTGTTATAAACTTCGAATTTGAATATCATTAGGTCGTTTAATTGCCATTTAATTATGGGTTTTCATTGTTTTTAGTTGCAGGGAATTATTCTGTAA

mRNA sequence

ATGGAGGCAGGAAATCAAGGTTATAATGGTATTGAAGTAGAGGGGAAGGAAATAAAACGATTAGTACAGATTGTGATATATTATTTGGAGGGTCAAGATTCATCCAAATCAATGGTGAAGATGAAGGTTCTCACCATAAGAAAAAATCTCGCCGTAAGTAACCACCTAAGCTTCCTAGTTTCCTCCTTCTACACAACTTCGTTCTCCCTCTTATATAATGGCGTAATTCCCCAATTTCGCCCTCTTTCTGGAGAGAGATTGGCGTCTAACACACGATTTCTGAAATTTTCAGCGAACCCCAAATTTCTTCCTTCATTTTGTATCGTCAAATCTCAGTTGCAGGGAATTATTCTGTAA

Coding sequence (CDS)

ATGGAGGCAGGAAATCAAGGTTATAATGGTATTGAAGTAGAGGGGAAGGAAATAAAACGATTAGTACAGATTGTGATATATTATTTGGAGGGTCAAGATTCATCCAAATCAATGGTGAAGATGAAGGTTCTCACCATAAGAAAAAATCTCGCCGTAAGTAACCACCTAAGCTTCCTAGTTTCCTCCTTCTACACAACTTCGTTCTCCCTCTTATATAATGGCGTAATTCCCCAATTTCGCCCTCTTTCTGGAGAGAGATTGGCGTCTAACACACGATTTCTGAAATTTTCAGCGAACCCCAAATTTCTTCCTTCATTTTGTATCGTCAAATCTCAGTTGCAGGGAATTATTCTGTAA

Protein sequence

MEAGNQGYNGIEVEGKEIKRLVQIVIYYLEGQDSSKSMVKMKVLTIRKNLAVSNHLSFLVSSFYTTSFSLLYNGVIPQFRPLSGERLASNTRFLKFSANPKFLPSFCIVKSQLQGIIL

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo24797.1	Spo24797.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo24797.1 vs. NCBI nr
BLAST of Spo24797.1 vs. UniProtKB/TrEMBL
BLAST of Spo24797.1 vs. ExPASy Swiss-Prot
BLAST of Spo24797.1 vs. TAIR (Arabidopsis)

BLAST of Spo24797.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo24797.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo24797.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo24797.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006754	ATP biosynthetic process
biological_process	GO:0010015	root morphogenesis
biological_process	GO:0048481	plant ovule development
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006364	rRNA processing
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0010075	regulation of meristem growth
biological_process	GO:0008361	regulation of cell size
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0009832	plant-type cell wall biogenesis
biological_process	GO:0007389	pattern specification process
biological_process	GO:0009926	auxin polar transport
biological_process	GO:0048653	anther development
biological_process	GO:0009793	embryo development ending in seed dormancy
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0044424	intracellular part
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0019843	rRNA binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo01224	0.71	Barchart \| Table
Spo15619	0.70	Barchart \| Table
Spo15244	0.69	Barchart \| Table
Spo11478	0.66	Barchart \| Table
Spo09460	0.65	Barchart \| Table
Spo16392	0.65	Barchart \| Table