Spo24877 (gene) | SpinachBase

Overview


Name	Spo24877
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Gibberellin-regulated protein 6 (GAST1 protein homolog 6) (Precursor)
Location	SpoScf_02767 : 17830 .. 19656 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAATTTGTTGCAATAAAAGAAAAAAGTTATTTAAAAGTAGCAAGTATACCGGTCACAACTGTCTATAAATAGGGTCCAAAAATCGTTAGTAACCACCAACTCCATCAGTCTCATTTCTCTCCGACCTTCACTTTTCTATCTATTTTCTTTCTCCACTTTAGATTATAGATAACACATTTTTTGTTGAAGATTAACAACAATGGGTATCAAAGTTCTGTATACCATTTTCATTTTTGTTATTTTCCTCCACTTTTCTCCTGCAGAAAATCATGTAAGTTCCGAAATTCACAATGAATAGTTTGGATTCGTTTCCTTGATTAGTCTCATATTAAAAGCGATGGAAACACGTACAGTTAGTTACCCATTACGATTTCCAAGTTAGTATTATATAATGGAGGAAAATGTTTGATGTTTATTATCCTAGTGAAATTTCCTTGTATGCACGGATGGATCCGTATAACCGTCATCAATAATGCTCTAACTTTTCCAGTTTCCTTTAAAACAAAAAGTAGCAGCTCTGGTTTTTCTGTTAATTTGTCAACAAAGTTTTGAGTTTTGACCATTTTAATGAGTGATTTTGTTAATGAATGCAGCCAACCCATCAGCATAAGGGCCATACCCAGCCTCCAAGTCCAAGCCCACTATCCTCATACACCTTGCCTTCGGTAAGATCGATGAGCTGCTTTTGCTACGGTTTTCTGGGCAATTTATAAATTAATAATGTAAATTTATAAATTTTAAAGCTCTAAACCACTAACTTGGAAACTTTGATAAATTTCAGTATGGTTTTACCCAAGGAAGTCTCCAGCCTCAAGGTACTACTATACTAATTACTAAGCTCAACTATATATATGTTCGATCTTATATTTCTGATTTCACTTACTGGAATACTAGCTGTTTAGATATTTAAAATTGGAACTTAATTATTTCCAATTATAACTAATTAATTGTTAATTGGAACAGAATGTGGAACAAGATGTGCTTATAGATGTTCAAACACACAGTATAGGAAGCCATGCTTGTTTTTCTGTAACAAGTGTTGTGCCAAGTGCTTGTGTGTGCCTACTGGTACTTACGGCAACAAACAAGCTTGCCCTTGCTACAACAACTGGAAGACCAAGAGGGGTGGTCCCAAATGTCCCTAAACTTATACGGAGTACAACTACTACTCTTTTAACGCAAGCTCACCCTATAACTCTAAGTCTATTATTCTTTCAGTAATTCAGAGTTGAGCTTCGTATGTTCCCAATTTCAGGAATAGCTTTCCTAACAAATATTGTTGCTTTCCTAAAGTCTCAAACTCGAGAAATTGGTTAAGCCGGAACAATTCTCTTATCATTTGATCCAAACACTTGTACGTTAATCCTCGTCTACTTACCTATACTTCTATACTTTTTTATTTTCACTATTTTGACATTTCCTCCATGTCATGCATGTTTCTTAATATAAAATGTCCCTATCAATAATGTAATATGATGTATTGTTATGTTTATAAGGATGTAATTTGGGAATTAAGATTATATTATGTGGAATAAAAGTTTTGTAACTTTGTCGTGGCTAATGCGAAATATTTGAAGACGAGAAATAATTTCACTATCCAAGATCGAGCATTGCTCTCGCCCAGTAGCCCCTTGTACGTAATAATTAGTTATCACCGTACTACTTGAAAAAATTGGTTGTTTAGAGTGAAAAGCCTGTATCTATTGGTAAGACTGTACAAGAGCACAAGAGAACAGGAGCATATCACAAGCGAACGTTATTTAAAGCTACTAATTTTAACGTTTGACAAAAGTTACCCAATCACTACATCTACCGCTAATCGCTA

mRNA sequence

TTTAATTTGTTGCAATAAAAGAAAAAAGTTATTTAAAAGTAGCAAGTATACCGGTCACAACTGTCTATAAATAGGGTCCAAAAATCGTTAGTAACCACCAACTCCATCAGTCTCATTTCTCTCCGACCTTCACTTTTCTATCTATTTTCTTTCTCCACTTTAGATTATAGATAACACATTTTTTGTTGAAGATTAACAACAATGGGTATCAAAGTTCTGTATACCATTTTCATTTTTGTTATTTTCCTCCACTTTTCTCCTGCAGAAAATCATCCAACCCATCAGCATAAGGGCCATACCCAGCCTCCAAGTCCAAGCCCACTATCCTCATACACCTTGCCTTCGTATGGTTTTACCCAAGGAAGTCTCCAGCCTCAAGAATGTGGAACAAGATGTGCTTATAGATGTTCAAACACACAGTATAGGAAGCCATGCTTGTTTTTCTGTAACAAGTGTTGTGCCAAGTGCTTGTGTGTGCCTACTGGTACTTACGGCAACAAACAAGCTTGCCCTTGCTACAACAACTGGAAGACCAAGAGGGGTGGTCCCAAATGTCCCTAAACTTATACGGAGTACAACTACTACTCTTTTAACGCAAGCTCACCCTATAACTCTAAGTCTATTATTCTTTCAGTAATTCAGAGTTGAGCTTCGTATGTTCCCAATTTCAGGAATAGCTTTCCTAACAAATATTGTTGCTTTCCTAAAGTCTCAAACTCGAGAAATTGGTTAAGCCGGAACAATTCTCTTATCATTTGATCCAAACACTTGTACGTTAATCCTCGTCTACTTACCTATACTTCTATACTTTTTTATTTTCACTATTTTGACATTTCCTCCATGTCATGCATGTTTCTTAATATAAAATGTCCCTATCAATAATGTAATATGATGTATTGTTATGTTTATAAGGATGTAATTTGGGAATTAAGATTATATTATGTGGAATAAAAGTTTTGTAACTTTGTCGTGGCTAATGCGAAATATTTGAAGACGAGAAATAATTTCACTATCCAAGATCGAGCATTGCTCTCGCCCAGTAGCCCCTTGTACGTAATAATTAGTTATCACCGTACTACTTGAAAAAATTGGTTGTTTAGAGTGAAAAGCCTGTATCTATTGGTAAGACTGTACAAGAGCACAAGAGAACAGGAGCATATCACAAGCGAACGTTATTTAAAGCTACTAATTTTAACGTTTGACAAAAGTTACCCAATCACTACATCTACCGCTAATCGCTA

Coding sequence (CDS)

ATGGGTATCAAAGTTCTGTATACCATTTTCATTTTTGTTATTTTCCTCCACTTTTCTCCTGCAGAAAATCATCCAACCCATCAGCATAAGGGCCATACCCAGCCTCCAAGTCCAAGCCCACTATCCTCATACACCTTGCCTTCGTATGGTTTTACCCAAGGAAGTCTCCAGCCTCAAGAATGTGGAACAAGATGTGCTTATAGATGTTCAAACACACAGTATAGGAAGCCATGCTTGTTTTTCTGTAACAAGTGTTGTGCCAAGTGCTTGTGTGTGCCTACTGGTACTTACGGCAACAAACAAGCTTGCCCTTGCTACAACAACTGGAAGACCAAGAGGGGTGGTCCCAAATGTCCCTAA

Protein sequence

MGIKVLYTIFIFVIFLHFSPAENHPTHQHKGHTQPPSPSPLSSYTLPSYGFTQGSLQPQECGTRCAYRCSNTQYRKPCLFFCNKCCAKCLCVPTGTYGNKQACPCYNNWKTKRGGPKCP

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo24877.1	Spo24877.1	mRNA

Homology

[Close]

BLAST of Spo24877.1 vs. NCBI nr
Match: gi|902108065|gb|KNA03687.1| (hypothetical protein SOVF_206730 [Spinacia oleracea])

HSP 1 Score: 265.4 bits (677), Expect = 4.800e-68
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1


		  
Query: 1   MGIKVLYTIFIFVIFLHFSPAENHPTHQHKGHTQPPSPSPLSSYTLPSYGFTQGSLQPQE 60
           MGIKVLYTIFIFVIFLHFSPAENHPTHQHKGHTQPPSPSPLSSYTLPSYGFTQGSLQPQE
Sbjct: 1   MGIKVLYTIFIFVIFLHFSPAENHPTHQHKGHTQPPSPSPLSSYTLPSYGFTQGSLQPQE 60

Query: 61  CGTRCAYRCSNTQYRKPCLFFCNKCCAKCLCVPTGTYGNKQACPCYNNWKTKRGGPKCP 120
           CGTRCAYRCSNTQYRKPCLFFCNKCCAKCLCVPTGTYGNKQACPCYNNWKTKRGGPKCP
Sbjct: 61  CGTRCAYRCSNTQYRKPCLFFCNKCCAKCLCVPTGTYGNKQACPCYNNWKTKRGGPKCP 119

[Close]

BLAST of Spo24877.1 vs. NCBI nr
Match: gi|731324413|ref|XP_010672957.1| (PREDICTED: gibberellin-regulated protein 13-like isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 203.4 bits (516), Expect = 2.300e-49
Identity = 94/119 (78.99%), Postives = 99/119 (83.19%), Query Frame = 1


		  
Query: 1   MGIKVLYTIFIFVIFLHFSPAENHPTHQHKGHTQPPSPSPLSSYTLPSYGFTQGSLQPQE 60
           M +K+LY IF FVIFLHFSPAENH      G T+ PSPSP  S T+PSYG T GSLQPQE
Sbjct: 1   MAMKLLYAIFFFVIFLHFSPAENHKV----GKTEVPSPSPQPSSTMPSYGSTPGSLQPQE 60

Query: 61  CGTRCAYRCSNTQYRKPCLFFCNKCCAKCLCVPTGTYGNKQACPCYNNWKTKRGGPKCP 120
           CG RCA RCSNTQY+KPCLFFCNKCCAKCLCVP GTYGNKQ CPCYNNWKTKRGGPKCP
Sbjct: 61  CGPRCATRCSNTQYKKPCLFFCNKCCAKCLCVPPGTYGNKQFCPCYNNWKTKRGGPKCP 115

[Close]

BLAST of Spo24877.1 vs. NCBI nr
Match: gi|731324415|ref|XP_010672958.1| (PREDICTED: gibberellin-regulated protein 13-like isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 203.0 bits (515), Expect = 2.900e-49
Identity = 94/119 (78.99%), Postives = 99/119 (83.19%), Query Frame = 1


		  
Query: 1   MGIKVLYTIFIFVIFLHFSPAENHPTHQHKGHTQPPSPSPLSSYTLPSYGFTQGSLQPQE 60
           M +K+LY IF FVIFLHFSPAEN     H G T+ PSPSP  S T+PSYG T GSLQPQE
Sbjct: 1   MAMKLLYAIFFFVIFLHFSPAEN-----HVGKTEVPSPSPQPSSTMPSYGSTPGSLQPQE 60

Query: 61  CGTRCAYRCSNTQYRKPCLFFCNKCCAKCLCVPTGTYGNKQACPCYNNWKTKRGGPKCP 120
           CG RCA RCSNTQY+KPCLFFCNKCCAKCLCVP GTYGNKQ CPCYNNWKTKRGGPKCP
Sbjct: 61  CGPRCATRCSNTQYKKPCLFFCNKCCAKCLCVPPGTYGNKQFCPCYNNWKTKRGGPKCP 114

[Close]

BLAST of Spo24877.1 vs. NCBI nr
Match: gi|645271074|ref|XP_008240742.1| (PREDICTED: protein GAST1 [Prunus mume])

HSP 1 Score: 160.6 bits (405), Expect = 1.700e-36
Identity = 74/111 (66.67%), Postives = 82/111 (73.87%), Query Frame = 1


		  
Query: 9   IFIFVIFLHFSPAENHPTHQHKGHTQPPSPSPLSSYTLPSYGFTQGSLQPQECGTRCAYR 68
           I + ++ LHF   ENH T      T+ P+P P  S      G T+GSLQPQECG RC+ R
Sbjct: 10  IVLSLVMLHFLIVENHATTI----TEAPAPQPQGSNNHTMNGITEGSLQPQECGPRCSTR 69

Query: 69  CSNTQYRKPCLFFCNKCCAKCLCVPTGTYGNKQACPCYNNWKTKRGGPKCP 120
           CSNTQY+KPCLFFC KCCAKCLCVP GTYGNKQ CPCYNNWKTKRGGPKCP
Sbjct: 70  CSNTQYKKPCLFFCQKCCAKCLCVPPGTYGNKQFCPCYNNWKTKRGGPKCP 116

[Close]

BLAST of Spo24877.1 vs. NCBI nr
Match: gi|59042581|gb|AAW83819.1| (GASA2-like protein [Pelargonium zonale])

HSP 1 Score: 160.2 bits (404), Expect = 2.200e-36
Identity = 69/87 (79.31%), Postives = 73/87 (83.91%), Query Frame = 1


		  
Query: 33  TQPPSPSPLSSYTLPSYGFTQGSLQPQECGTRCAYRCSNTQYRKPCLFFCNKCCAKCLCV 92
           T+ PSP P S      YG T+GSLQPQECG RC+ RCSNTQY+KPCLFFCNKCCAKCLCV
Sbjct: 31  TEAPSPQPHSQSNHTMYGITEGSLQPQECGPRCSERCSNTQYKKPCLFFCNKCCAKCLCV 90

Query: 93  PTGTYGNKQACPCYNNWKTKRGGPKCP 120
           P GTYGNKQ CPCYNNWKTKRGGPKCP
Sbjct: 91  PPGTYGNKQFCPCYNNWKTKRGGPKCP 117

[Close]

BLAST of Spo24877.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q8T4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_206730 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 3.400e-68
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1


		  
Query: 1   MGIKVLYTIFIFVIFLHFSPAENHPTHQHKGHTQPPSPSPLSSYTLPSYGFTQGSLQPQE 60
           MGIKVLYTIFIFVIFLHFSPAENHPTHQHKGHTQPPSPSPLSSYTLPSYGFTQGSLQPQE
Sbjct: 1   MGIKVLYTIFIFVIFLHFSPAENHPTHQHKGHTQPPSPSPLSSYTLPSYGFTQGSLQPQE 60

Query: 61  CGTRCAYRCSNTQYRKPCLFFCNKCCAKCLCVPTGTYGNKQACPCYNNWKTKRGGPKCP 120
           CGTRCAYRCSNTQYRKPCLFFCNKCCAKCLCVPTGTYGNKQACPCYNNWKTKRGGPKCP
Sbjct: 61  CGTRCAYRCSNTQYRKPCLFFCNKCCAKCLCVPTGTYGNKQACPCYNNWKTKRGGPKCP 119

[Close]

BLAST of Spo24877.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CN04_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g062340 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.600e-49
Identity = 94/119 (78.99%), Postives = 99/119 (83.19%), Query Frame = 1


		  
Query: 1   MGIKVLYTIFIFVIFLHFSPAENHPTHQHKGHTQPPSPSPLSSYTLPSYGFTQGSLQPQE 60
           M +K+LY IF FVIFLHFSPAENH      G T+ PSPSP  S T+PSYG T GSLQPQE
Sbjct: 1   MAMKLLYAIFFFVIFLHFSPAENHKV----GKTEVPSPSPQPSSTMPSYGSTPGSLQPQE 60

Query: 61  CGTRCAYRCSNTQYRKPCLFFCNKCCAKCLCVPTGTYGNKQACPCYNNWKTKRGGPKCP 120
           CG RCA RCSNTQY+KPCLFFCNKCCAKCLCVP GTYGNKQ CPCYNNWKTKRGGPKCP
Sbjct: 61  CGPRCATRCSNTQYKKPCLFFCNKCCAKCLCVPPGTYGNKQFCPCYNNWKTKRGGPKCP 115

[Close]

BLAST of Spo24877.1 vs. UniProtKB/TrEMBL
Match: Q5EDG3_9ROSI (GASA2-like protein OS=Pelargonium zonale PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.500e-36
Identity = 69/87 (79.31%), Postives = 73/87 (83.91%), Query Frame = 1


		  
Query: 33  TQPPSPSPLSSYTLPSYGFTQGSLQPQECGTRCAYRCSNTQYRKPCLFFCNKCCAKCLCV 92
           T+ PSP P S      YG T+GSLQPQECG RC+ RCSNTQY+KPCLFFCNKCCAKCLCV
Sbjct: 31  TEAPSPQPHSQSNHTMYGITEGSLQPQECGPRCSERCSNTQYKKPCLFFCNKCCAKCLCV 90

Query: 93  PTGTYGNKQACPCYNNWKTKRGGPKCP 120
           P GTYGNKQ CPCYNNWKTKRGGPKCP
Sbjct: 91  PPGTYGNKQFCPCYNNWKTKRGGPKCP 117

[Close]

BLAST of Spo24877.1 vs. UniProtKB/TrEMBL
Match: M5XG21_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023616mg PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.000e-36
Identity = 73/116 (62.93%), Postives = 83/116 (71.55%), Query Frame = 1


		  
Query: 4   KVLYTIFIFVIFLHFSPAENHPTHQHKGHTQPPSPSPLSSYTLPSYGFTQGSLQPQECGT 63
           + L  + + ++ LHF   ENH T       + P+P P  S      G T+GSLQPQECG 
Sbjct: 3   RTLRIVMLCLVMLHFLIVENHATTI----AEAPAPQPQGSNNHTMSGITEGSLQPQECGP 62

Query: 64  RCAYRCSNTQYRKPCLFFCNKCCAKCLCVPTGTYGNKQACPCYNNWKTKRGGPKCP 120
           RC+ RCSNTQY+KPCLFFC KCCAKCLCVP GTYGNKQ CPCYNNWKTKRGGPKCP
Sbjct: 63  RCSTRCSNTQYKKPCLFFCQKCCAKCLCVPPGTYGNKQFCPCYNNWKTKRGGPKCP 114

[Close]

BLAST of Spo24877.1 vs. UniProtKB/TrEMBL
Match: B9SVR9_RICCO (GAST1 protein, putative OS=Ricinus communis GN=RCOM_0255000 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 9.900e-36
Identity = 69/116 (59.48%), Postives = 82/116 (70.69%), Query Frame = 1


		  
Query: 4   KVLYTIFIFVIFLHFSPAENHPTHQHKGHTQPPSPSPLSSYTLPSYGFTQGSLQPQECGT 63
           K  + +F+  + L F          H   ++ P+P P  + +LP YG TQGSLQPQ+CG 
Sbjct: 7   KASFAMFVLALMLLFI------LESHASTSEAPAPQPQQNSSLPKYGSTQGSLQPQDCGP 66

Query: 64  RCAYRCSNTQYRKPCLFFCNKCCAKCLCVPTGTYGNKQACPCYNNWKTKRGGPKCP 120
           +C  RCS TQY KPC+FFC KCCAKCLCVP+GTYGNKQ CPCYNNWKTKRGGPKCP
Sbjct: 67  QCTRRCSKTQYHKPCMFFCQKCCAKCLCVPSGTYGNKQTCPCYNNWKTKRGGPKCP 116

[Close]

BLAST of Spo24877.1 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 4.300e-32
Identity = 54/71 (76.06%), Postives = 61/71 (85.92%), Query Frame = 1


		  
Query: 49  YGFTQGSLQPQECGTRCAYRCSNTQYRKPCLFFCNKCCAKCLCVPTGTYGNKQACPCYNN 108
           YG ++G L PQ+C  +C YRCS T Y+KPC+FFC KCCAKCLCVP GTYGNKQ+CPCYNN
Sbjct: 42  YGVSEGRLHPQDCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNN 101

Query: 109 WKTKRGGPKCP 120
           WKTKRGGPKCP
Sbjct: 102 WKTKRGGPKCP 112

[Close]

BLAST of Spo24877.1 vs. ExPASy Swiss-Prot
Match: GASAD_ARATH (Gibberellin-regulated protein 13 OS=Arabidopsis thaliana GN=GASA13 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 4.400e-29
Identity = 54/69 (78.26%), Postives = 58/69 (84.06%), Query Frame = 1


		  
Query: 52  TQGSLQPQ-ECGTRCAYRCSNTQYRKPCLFFCNKCCAKCLCVPTGTYGNKQACPCYNNWK 111
           T+ ++ P  ECG RC  RCSNTQY+KPCLFFCNKCC KCLCVP GTYGNKQ CPCYNNWK
Sbjct: 35  TKSAIPPLLECGPRCGDRCSNTQYKKPCLFFCNKCCNKCLCVPPGTYGNKQVCPCYNNWK 94

Query: 112 TKRGGPKCP 120
           TK GGPKCP
Sbjct: 95  TKSGGPKCP 103

[Close]

BLAST of Spo24877.1 vs. ExPASy Swiss-Prot
Match: GASA6_ARATH (Gibberellin-regulated protein 6 OS=Arabidopsis thaliana GN=GASA6 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.800e-29
Identity = 54/78 (69.23%), Postives = 62/78 (79.49%), Query Frame = 1


		  
Query: 42  SSYTLPSYGFTQGSLQPQECGTRCAYRCSNTQYRKPCLFFCNKCCAKCLCVPTGTYGNKQ 101
           + Y   SYG   GSL+  +CG +C  RCSNT+Y KPC+FFC KCCAKCLCVP GTYGNKQ
Sbjct: 26  AEYHPESYG--PGSLKSYQCGGQCTRRCSNTKYHKPCMFFCQKCCAKCLCVPPGTYGNKQ 85

Query: 102 ACPCYNNWKTKRGGPKCP 120
            CPCYNNWKT++GGPKCP
Sbjct: 86  VCPCYNNWKTQQGGPKCP 101

[Close]

BLAST of Spo24877.1 vs. ExPASy Swiss-Prot
Match: GASAC_ARATH (Gibberellin-regulated protein 12 OS=Arabidopsis thaliana GN=GASA12 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.900e-28
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 1


		  
Query: 53  QGSLQPQECGTRCAYRCSNTQYRKPCLFFCNKCCAKCLCVPTGTYGNKQACPCYNNWKTK 112
           +GSL+P+EC   C YRCS T +RKPCLFFCNKCC KCLCVP+GTYG+K+ CPCYNNW TK
Sbjct: 40  EGSLKPEECPKACEYRCSATSHRKPCLFFCNKCCNKCLCVPSGTYGHKEECPCYNNWTTK 99

Query: 113 RGGPKCP 120
            GGPKCP
Sbjct: 100 EGGPKCP 106

[Close]

BLAST of Spo24877.1 vs. ExPASy Swiss-Prot
Match: GASA5_ARATH (Gibberellin-regulated protein 5 OS=Arabidopsis thaliana GN=GASA5 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 9.200e-27
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = 1


		  
Query: 54  GSLQPQECGTRCAYRCSNTQYRKPCLFFCNKCCAKCLCVPTGTYGNKQACPCYNNWKTKR 113
           G L+PQ+C ++C++RCS T ++KPC+FFC KCC KCLCVP GT+GNKQ CPCYNNWKTK 
Sbjct: 32  GKLKPQQCNSKCSFRCSATSHKKPCMFFCLKCCKKCLCVPPGTFGNKQTCPCYNNWKTKE 91

Query: 114 GGPKCP 120
           G PKCP
Sbjct: 92  GRPKCP 97

[Close]

BLAST of Spo24877.1 vs. TAIR (Arabidopsis)
Match: AT3G10185.1 (Gibberellin-regulated family protein)

HSP 1 Score: 128.6 bits (322), Expect = 2.500e-30
Identity = 54/69 (78.26%), Postives = 58/69 (84.06%), Query Frame = 1


		  
Query: 52  TQGSLQPQ-ECGTRCAYRCSNTQYRKPCLFFCNKCCAKCLCVPTGTYGNKQACPCYNNWK 111
           T+ ++ P  ECG RC  RCSNTQY+KPCLFFCNKCC KCLCVP GTYGNKQ CPCYNNWK
Sbjct: 35  TKSAIPPLLECGPRCGDRCSNTQYKKPCLFFCNKCCNKCLCVPPGTYGNKQVCPCYNNWK 94

Query: 112 TKRGGPKCP 120
           TK GGPKCP
Sbjct: 95  TKSGGPKCP 103

[Close]

BLAST of Spo24877.1 vs. TAIR (Arabidopsis)
Match: AT1G74670.1 (Gibberellin-regulated family protein)

HSP 1 Score: 128.3 bits (321), Expect = 3.200e-30
Identity = 54/78 (69.23%), Postives = 62/78 (79.49%), Query Frame = 1


		  
Query: 42  SSYTLPSYGFTQGSLQPQECGTRCAYRCSNTQYRKPCLFFCNKCCAKCLCVPTGTYGNKQ 101
           + Y   SYG   GSL+  +CG +C  RCSNT+Y KPC+FFC KCCAKCLCVP GTYGNKQ
Sbjct: 26  AEYHPESYG--PGSLKSYQCGGQCTRRCSNTKYHKPCMFFCQKCCAKCLCVPPGTYGNKQ 85

Query: 102 ACPCYNNWKTKRGGPKCP 120
            CPCYNNWKT++GGPKCP
Sbjct: 86  VCPCYNNWKTQQGGPKCP 101

[Close]

BLAST of Spo24877.1 vs. TAIR (Arabidopsis)
Match: AT2G30810.1 (Gibberellin-regulated family protein)

HSP 1 Score: 125.9 bits (315), Expect = 1.600e-29
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 1


		  
Query: 53  QGSLQPQECGTRCAYRCSNTQYRKPCLFFCNKCCAKCLCVPTGTYGNKQACPCYNNWKTK 112
           +GSL+P+EC   C YRCS T +RKPCLFFCNKCC KCLCVP+GTYG+K+ CPCYNNW TK
Sbjct: 40  EGSLKPEECPKACEYRCSATSHRKPCLFFCNKCCNKCLCVPSGTYGHKEECPCYNNWTTK 99

Query: 113 RGGPKCP 120
            GGPKCP
Sbjct: 100 EGGPKCP 106

[Close]

BLAST of Spo24877.1 vs. TAIR (Arabidopsis)
Match: AT3G02885.1 (GAST1 protein homolog 5)

HSP 1 Score: 120.9 bits (302), Expect = 5.200e-28
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = 1


		  
Query: 54  GSLQPQECGTRCAYRCSNTQYRKPCLFFCNKCCAKCLCVPTGTYGNKQACPCYNNWKTKR 113
           G L+PQ+C ++C++RCS T ++KPC+FFC KCC KCLCVP GT+GNKQ CPCYNNWKTK 
Sbjct: 32  GKLKPQQCNSKCSFRCSATSHKKPCMFFCLKCCKKCLCVPPGTFGNKQTCPCYNNWKTKE 91

Query: 114 GGPKCP 120
           G PKCP
Sbjct: 92  GRPKCP 97

[Close]

BLAST of Spo24877.1 vs. TAIR (Arabidopsis)
Match: AT5G15230.1 (GAST1 protein homolog 4)

HSP 1 Score: 109.0 bits (271), Expect = 2.000e-24
Identity = 44/66 (66.67%), Postives = 49/66 (74.24%), Query Frame = 1


		  
Query: 54  GSLQPQECGTRCAYRCSNTQYRKPCLFFCNKCCAKCLCVPTGTYGNKQACPCYNNWKTKR 113
           GSL+  +C + C  RC  TQY K C+ FCNKCC KCLCVP G YGNKQ C CYNNWKT+ 
Sbjct: 41  GSLKRTQCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQE 100

Query: 114 GGPKCP 120
           GGPKCP
Sbjct: 101 GGPKCP 106

The following BLAST results are available for this feature:

BLAST of Spo24877.1 vs. NCBI nr
BLAST of Spo24877.1 vs. UniProtKB/TrEMBL
BLAST of Spo24877.1 vs. ExPASy Swiss-Prot
BLAST of Spo24877.1 vs. TAIR (Arabidopsis)

BLAST of Spo24877.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902108065\|gb\|KNA03687.1\|	4.8e-68	100.	hypothetical protein SOVF_2067...	[more]
gi\|731324413\|ref\|XP_010672957.1\|	2.3e-49	78.9	PREDICTED: gibberellin-regulat...	[more]
gi\|731324415\|ref\|XP_010672958.1\|	2.9e-49	78.9	PREDICTED: gibberellin-regulat...	[more]
gi\|645271074\|ref\|XP_008240742.1\|	1.7e-36	66.6	PREDICTED: protein GAST1 [Prun...	[more]
gi\|59042581\|gb\|AAW83819.1\|	2.2e-36	79.3	GASA2-like protein [Pelargoniu...	[more]

BLAST of Spo24877.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9Q8T4_SPIOL	3.4e-68	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CN04_BETVU	1.6e-49	78.9	Uncharacterized protein OS=Bet...	[more]
Q5EDG3_9ROSI	1.5e-36	79.3	GASA2-like protein OS=Pelargon...	[more]
M5XG21_PRUPE	2.0e-36	62.9	Uncharacterized protein OS=Pru...	[more]
B9SVR9_RICCO	9.9e-36	59.4	GAST1 protein, putative OS=Ric...	[more]

BLAST of Spo24877.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
GAST1_SOLLC	4.3e-32	76.0	Protein GAST1 OS=Solanum lycop...	[more]
GASAD_ARATH	4.4e-29	78.2	Gibberellin-regulated protein ...	[more]
GASA6_ARATH	5.8e-29	69.2	Gibberellin-regulated protein ...	[more]
GASAC_ARATH	2.9e-28	74.6	Gibberellin-regulated protein ...	[more]
GASA5_ARATH	9.2e-27	69.7	Gibberellin-regulated protein ...	[more]

BLAST of Spo24877.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT3G10185.1	2.5e-30	78.2	Gibberellin-regulated family p...	[more]
AT1G74670.1	3.2e-30	69.2	Gibberellin-regulated family p...	[more]
AT2G30810.1	1.6e-29	74.6	Gibberellin-regulated family p...	[more]
AT3G02885.1	5.2e-28	69.7	GAST1 protein homolog 5	[more]
AT5G15230.1	2.0e-24	66.6	GAST1 protein homolog 4	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003854	Gibberellin regulated protein	PFAM	PF02704	GASA	coord: 60..119 score: 2.6
None	No IPR available	PANTHER	PTHR23201	EXTENSIN, PROLINE-RICH PROTEIN	coord: 45..119 score: 3.1
None	No IPR available	PANTHER	PTHR23201:SF8	SUBFAMILY NOT NAMED	coord: 45..119 score: 3.1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0009718	anthocyanin-containing compound biosynthetic process
biological_process	GO:0016126	sterol biosynthetic process
biological_process	GO:0009845	seed germination
biological_process	GO:0010214	seed coat development
biological_process	GO:0030259	lipid glycosylation
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0010264	myo-inositol hexakisphosphate biosynthetic process
biological_process	GO:0009813	flavonoid biosynthetic process
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0006863	purine nucleobase transport
biological_process	GO:0015713	phosphoglycerate transmembrane transport
biological_process	GO:0089722	phosphoenolpyruvate transmembrane transport
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0071805	potassium ion transmembrane transport
biological_process	GO:0006508	proteolysis
biological_process	GO:0006457	protein folding
biological_process	GO:0008152	metabolic process
biological_process	GO:0032259	methylation
biological_process	GO:0030163	protein catabolic process
biological_process	GO:0071229	cellular response to acid chemical
biological_process	GO:0016311	dephosphorylation
biological_process	GO:0048573	photoperiodism, flowering
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0000160	phosphorelay signal transduction system
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0002213	defense response to insect
biological_process	GO:0030154	cell differentiation
biological_process	GO:0009555	pollen development
biological_process	GO:1901701	cellular response to oxygen-containing compound
biological_process	GO:0007165	signal transduction
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0009308	amine metabolic process
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0006364	rRNA processing
biological_process	GO:0010114	response to red light
biological_process	GO:0010218	response to far red light
biological_process	GO:0009637	response to blue light
biological_process	GO:0090333	regulation of stomatal closure
biological_process	GO:0019216	regulation of lipid metabolic process
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0001676	long-chain fatty acid metabolic process
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0009704	de-etiolation
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0071277	cellular response to calcium ion
biological_process	GO:0006646	phosphatidylethanolamine biosynthetic process
biological_process	GO:0019745	pentacyclic triterpenoid biosynthetic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006636	unsaturated fatty acid biosynthetic process
biological_process	GO:0010205	photoinhibition
biological_process	GO:0006655	phosphatidylglycerol biosynthetic process
biological_process	GO:0031408	oxylipin biosynthetic process
biological_process	GO:0046685	response to arsenic-containing substance
biological_process	GO:0005992	trehalose biosynthetic process
biological_process	GO:0071310	cellular response to organic substance
biological_process	GO:0006486	protein glycosylation
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0015979	photosynthesis
biological_process	GO:0050896	response to stimulus
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0019760	glucosinolate metabolic process
biological_process	GO:0050789	regulation of biological process
biological_process	GO:0006817	phosphate ion transport
biological_process	GO:0006744	ubiquinone biosynthetic process
biological_process	GO:0009639	response to red or far red light
biological_process	GO:0015996	chlorophyll catabolic process
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006810	transport
biological_process	GO:0009611	response to wounding
biological_process	GO:0009805	coumarin biosynthetic process
biological_process	GO:0015706	nitrate transport
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0042545	cell wall modification
biological_process	GO:0045490	pectin catabolic process
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0071555	cell wall organization
biological_process	GO:0030029	actin filament-based process
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0006811	ion transport
biological_process	GO:0009411	response to UV
biological_process	GO:0006661	phosphatidylinositol biosynthetic process
biological_process	GO:0009987	cellular process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005773	vacuole
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005618	cell wall
cellular_component	GO:0016020	membrane
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0031969	chloroplast membrane
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005856	cytoskeleton
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005622	intracellular
cellular_component	GO:0010287	plastoglobule
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0003950	NAD+ ADP-ribosyltransferase activity
molecular_function	GO:0005267	potassium channel activity
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0008131	primary amine oxidase activity
molecular_function	GO:0048038	quinone binding
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0045330	aspartyl esterase activity
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0004305	ethanolamine kinase activity
molecular_function	GO:0045430	chalcone isomerase activity
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0005200	structural constituent of cytoskeleton
molecular_function	GO:0005515	protein binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0005215	transporter activity
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0005315	inorganic phosphate transmembrane transporter activity
molecular_function	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups
molecular_function	GO:0004650	polygalacturonase activity
molecular_function	GO:0016829	lyase activity
molecular_function	GO:0047911	galacturan 1,4-alpha-galacturonidase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0020037	heme binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0046577	long-chain-alcohol oxidase activity
molecular_function	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water
molecular_function	GO:0050660	flavin adenine dinucleotide binding
molecular_function	GO:0080019	fatty-acyl-CoA reductase (alcohol-forming) activity
molecular_function	GO:0016871	cycloartenol synthase activity
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0016758	transferase activity, transferring hexosyl groups
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008289	lipid binding
molecular_function	GO:0016906	sterol 3-beta-glucosyltransferase activity
molecular_function	GO:0004805	trehalose-phosphatase activity
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0080048	GDP-D-glucose phosphorylase activity
molecular_function	GO:0015120	phosphoglycerate transmembrane transporter activity
molecular_function	GO:0015121	phosphoenolpyruvate:phosphate antiporter activity
molecular_function	GO:0004222	metalloendopeptidase activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0016772	transferase activity, transferring phosphorus-containing groups
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0030599	pectinesterase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo01081	0.80	Barchart \| Table
Spo06271	0.78	Barchart \| Table
Spo25648	0.77	Barchart \| Table
Spo20791	0.77	Barchart \| Table
Spo10761	0.77	Barchart \| Table
Spo09412	0.77	Barchart \| Table
Spo08168	0.77	Barchart \| Table
Spo15704	0.76	Barchart \| Table
Spo07910	0.75	Barchart \| Table
Spo04256	0.75	Barchart \| Table
Spo00275	0.74	Barchart \| Table
Spo25953	0.74	Barchart \| Table
Spo25439	0.74	Barchart \| Table
Spo12889	0.74	Barchart \| Table
Spo21035	0.73	Barchart \| Table
Spo25262	0.73	Barchart \| Table
Spo12666	0.72	Barchart \| Table
Spo22372	0.72	Barchart \| Table
Spo11392	0.72	Barchart \| Table
Spo01693	0.72	Barchart \| Table
Spo15458	0.72	Barchart \| Table
Spo14923	0.72	Barchart \| Table
Spo21148	0.72	Barchart \| Table
Spo19444	0.72	Barchart \| Table
Spo10677	0.71	Barchart \| Table
Spo12268	0.71	Barchart \| Table
Spo02044	0.71	Barchart \| Table
Spo23404	0.71	Barchart \| Table
Spo06753	0.71	Barchart \| Table
Spo25444	0.71	Barchart \| Table
Spo21382	0.70	Barchart \| Table
Spo05898	0.70	Barchart \| Table
Spo09566	0.70	Barchart \| Table
Spo12252	0.70	Barchart \| Table
Spo21581	0.70	Barchart \| Table
Spo17203	0.70	Barchart \| Table
Spo26520	0.70	Barchart \| Table
Spo07109	0.70	Barchart \| Table
Spo06012	0.69	Barchart \| Table
Spo30001	0.69	Barchart \| Table
Spo17238	0.69	Barchart \| Table
Spo11303	0.69	Barchart \| Table
Spo11368	0.69	Barchart \| Table
Spo19487	0.69	Barchart \| Table
Spo19461	0.69	Barchart \| Table
Spo24490	0.68	Barchart \| Table
Spo01697	0.68	Barchart \| Table
Spo03551	0.68	Barchart \| Table
Spo03639	0.68	Barchart \| Table
Spo07237	0.68	Barchart \| Table
Spo07579	0.68	Barchart \| Table
Spo10958	0.68	Barchart \| Table
Spo14473	0.68	Barchart \| Table
Spo21631	0.68	Barchart \| Table
Spo21956	0.68	Barchart \| Table
Spo25727	0.68	Barchart \| Table
Spo15369	0.67	Barchart \| Table
Spo16038	0.67	Barchart \| Table
Spo12005	0.67	Barchart \| Table
Spo18570	0.67	Barchart \| Table
Spo19150	0.67	Barchart \| Table
Spo10855	0.67	Barchart \| Table
Spo20043	0.67	Barchart \| Table
Spo21123	0.67	Barchart \| Table
Spo01087	0.67	Barchart \| Table
Spo21749	0.67	Barchart \| Table
Spo23035	0.67	Barchart \| Table
Spo23225	0.67	Barchart \| Table
Spo02833	0.67	Barchart \| Table
Spo23993	0.67	Barchart \| Table
Spo02279	0.67	Barchart \| Table
Spo01230	0.67	Barchart \| Table
Spo01107	0.67	Barchart \| Table
Spo26224	0.67	Barchart \| Table
Spo15074	0.67	Barchart \| Table
Spo14948	0.67	Barchart \| Table
Spo05552	0.66	Barchart \| Table
Spo26335	0.66	Barchart \| Table
Spo01533	0.66	Barchart \| Table
Spo12189	0.66	Barchart \| Table
Spo05020	0.66	Barchart \| Table
Spo10957	0.66	Barchart \| Table
Spo19862	0.66	Barchart \| Table
Spo00660	0.66	Barchart \| Table
Spo02775	0.66	Barchart \| Table
Spo06719	0.66	Barchart \| Table
Spo21274	0.66	Barchart \| Table
Spo06257	0.66	Barchart \| Table
Spo16173	0.66	Barchart \| Table
Spo13030	0.65	Barchart \| Table
Spo28001	0.65	Barchart \| Table
Spo01108	0.65	Barchart \| Table
Spo07702	0.65	Barchart \| Table
Spo21544	0.65	Barchart \| Table
Spo15079	0.65	Barchart \| Table
Spo25493	0.65	Barchart \| Table
Spo11270	0.65	Barchart \| Table
Spo08647	0.65	Barchart \| Table