Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGTGAGGGACTCGCTCACTCGCCTACGTGGCGCCTTACAATTGGTACTCATGATAAACTCCACGTTATTTTGACATATCGTCACTGCTAAACAATCCAACATTCAACCGGAGTCACCAACTGAACACCGTGTACCAATTCCTCACCGAATACAGAGAAAATCAGAGATACAACAATGGCGGAAAACTCCGATAATCCACCCACCGTCTCCAACCATTCTTCACCACCTAAACCTGCCGAGAATGATCTCAAGCTTCCTCAGGTCTTATTTTCCACCTTCTTCTACTACTTCATCTTCCTCGATAATTTTTTTTATTTAGATTTATGCTTAAGATCTAATTTAGGGCTTCCAATTTGCAAATTCGATTAATCAAGTATGTTATTTTGTGAATTTTTGAAAAAAATGGGCCTTTCTTAGCTTTAGGTTCAATGCCTATGATTCAATGATTTGGTCTCCCTCCTGAATCAAACTTTTTAGTGGAAAAAATGTTAAAGGTTTTATTTTATCTCGATTGCAATAATTTCTGCTCTGCTAAAAACATAAATTCAAACTCCGCAAAATTGAGGGGTTTCTGTTAGCTAGTTTATTTTCGTGTAGATAGAGCCACAAAGGGCAGTGTTACATACGAATTTGACTGAATTCGATCAATTAAGCTAGTTGACATCCGCTTGGAGAGTCGTGGAAGCCGTAATGCGACCTTTCATTAAGCAGAAGGAAAATTTTCTAGTATGTGATGTTGTTTTAGGCTATTTGTGTTCATATGTGGTGAATTAAAGGCTTTGTTTTAGGGTTTTTATTCATGTTAGTATGCTTATTGAGTTGGGAAATTAGTTTTCCAAGAGACCGTTGTGTTTTGTGGAGAAGAAAATAGACTTTCTCTCAAGAAGATGTTTCATTTACCTCGATTTCGAAGGAATTAAAACCTAATCCTCTACAAATATTAAGAGTGTAAAGGTTCTTCTTTTGGTAGAAACAATAAAGCTTAAATGAATTGGTTTACTGGAGATTATTGAAATTGCATCTAAAGGAGCCTATAATCAGTATAATGTGGGAACTTTTTGACACAGAGCCTGTTGTGTGGAAATCCAATTGGGTGTGATCCTTTCAGAATTAATGGTTTTTTGTTTGTGAGATAATTTCGATTGATATGTTTCACTTTGGTGTCACGCTATCTCTCTTTTTGACTGATTTATTGTATCAGGTACCCAATTTGCCTTATTTTCCATCTGTACAACATGGGGGTGTCAATATGATACCGATCATGTACCCCGCACTACTTCCAGGTCTTGCTTCTGCGCAGAACTCAGATCAGAATAACCGTGGACCCGGCATTTATGCTGTACCTATGCTTCCTTTTATGGGTACTGTCGCTGGGATTCCCACTGATACTCTTATTCCTCTTACATACAGCACACCAACGTAAGTATTAAGTGGGAATGTTTAAAGCTTCGTAATACTTGATTACTAGTATATCTGTTTGCACATTCTGCTAAAACGCTTTAAGTTAATATCCTTCTTCCTTTTGTTATGATAAGTTTAATTTGAATACTCCGTGGTGTATAGGTTGTGTGCAAGTGTCCAATAATCGCCTCGACAACAGAGGATATACATATTAAGGCTATTGCCATAACTTTCTGGGGTAACAGTAGCAAAGCTCTTTAAAAGTTAAAACCGTTGGAGTTGATAAACTGTTTTATTCTTTTTGGTTTTAGTAAGGGATAGTTATGTTAATTAAACACATTCATCTTGGGTTTTAAGTACGAACTACAAATTATGACTTAGGGAAGTATTTGTACGTTTAGAAATGAGGAGCTGCAATAGAAAGATGTGTGCCAGTTGCTGAATCCAATCTTTCCTTTGCGATTTGGATATACACTAGGAGTGCCATATTTGCTATTCTGAAACCGTACATAAATATGAAGTGATTAAGCTGAATCTTGGTTCTTCCAATTTAGCCAAATTCCTACTGGACAACTCATTTTCCTCCCCTGGAACTTGCACAACAGCAAGAGGCATACGATTTTTGCAAGTGATGTGTTAACTAATCTAACATTTTGAATATTTTATTTTGCACATTACTCATATGGCAAGGCTAGATGTAAAAGTTGGTTTCCTTAACATTTTAGTTAGTCGCATTTCTGTAACCCTTGAAGTTAACCAATTCTTGCTCGTGAATTTGTTGTAAGTTGTAACCCTTGAAGTTAGAGTTCTCCAAAGAAATTTTAAGATCTGTATTATTGGATTACCAAACTCGTTAGATTGGATTAATGTTGGGTAATTATACAACTAAATCATGCGACAACGATCATGTCAGCATGTGTAAATAAAAGAACTGAGTCTTGGAAGGTTTGGGTTGTAGTCCTGTATTTAAGTAGCACTATCAACTGAAGGGATGGAATGGTCTATAATAATTTGGTTGCTTAATGTTAATAGGAGAAGGACCTCTTCTGAGGCTGGAACTACTAACGGGGAGCAAGGCCAGATGAACCAGCAGCAGCCTCAACAGCTTGGAGCTCAACGACAGATTGTTGTACGGAGATTTCAGATAGCATTCCAGCTTGACTTGCTGCTCATATTAAAGTTGGCAGCTGTGATCTTTATATTTAACCAAGATGGTTCAAGACAAAGGCTTGCTCTACTTGTGTTCTTTGCATTTATCGTCTACTTGTAAGTATATGTTATATTTGATGGCATAAAATATCTGCTTGAGGACATATTTTAAAATATTACCAATAAGGATCTCTGTCTAATGAATCTGTACGTCCTTATGTATGAAAAGTAGTTTTTAGTCTCAATTTTTGTACTTCTGTGTTCCACTTACAATAGACTTTACTTTCACATATATGTTCTGAATCAGTTTTTAAGATCTTCACTCAAACTACTTCCCACTATTTTCATGCTTGATTTACAACAGACTGGAAGTTTGGATACTTTTACTGTTCTGAACTTTGGTTTATGAATGTCAATATGAGATTATGTTTGTCCACTTACCCTTGTTTTCTTTCTCTGAGGATATCTGGTCCTCCTTGTACTCTTCAATTGTATATTAACATGAATTCTTCTCATACAAGTCTGAAATTACTCAACCTTTATGATGGTTTACTGCAGATACCAGACTGGAGCTTTAACTCCACTTATGCGTTGGATATCACAAGCAATGCACAGGGCAGCTGCTCCTCCTCGACAACCAAGGCCTGTTGCCAGGGTTGACCCGGTTGTTGGACAAGGGAATAATAACGTTGTTGCAGCTGCTGCTGGTAATCTACTATTTTTTAGTCTTGCATATTGTATCATGTTGGGTGTTAATTGTTGAAAAAAAATGTTACCCTTGATGATCATTTATGATGTGGCCATCTGAAGAGAATCAGCGAGTCCGCATTTGATGTTTTTTACTAAATTCAGCACTTGTAGTGTTTTATTTGACAAAGAGTTCCTGATGAGTTATTTTTTCCAAATATCTTTGGCTCTTTGCGAAGCCATCATGTACCATCCATAAAAATGCAACATTTTATTTTCTTCAGGGTCTTTTTTTCTTTTTACATGGGCACATGCATTGGAGCATTTTCAGCTCCCAATGAGTTCCCAATGTGTTAAAGAGATGGGAGTGGGAGTGGGAGATATTGGACCACATGGTATTTATATCAATTCCTGGTTTTAATACGCATAGGAATAATGAGGTCTGTTGGTATTTTGAAATAATTGCAAGGACATAAAGTTTTTTCATGCTTGTTAGTGGAGATTAGGCATTCATGTATTAGGGCAAAAAGAAAGACTGATTGGAAAATATGCAGAATGGAAATGGAAGACTACTACTGATTGTTTTCTGATCCTACTGATGTGTGGATGCATTATTTTCCATGTAACAGAGCATCAACCTGGAGCAGAGAACGGCAATCCACCAGCAGATGGTGCAGAACGTGTAGTTGAAAATGAAGAGGCTCCTGAGGCAGGAGTTGAAGGAGGCAACCACTGGTGGGGTATCGTAAAAGAGATTCAGATGATAGTTTTTGGCTTCATCACCTCTCTCCTCCCCGGATTCCATAACATGGATCATCCCTAAAGGGCTTATGGACTAACCAAATTGCTCCACCCTGCAGCGAAAACAACTTTACATGTCGAAGTGGGGGATTAAGCCGTATACCTGTCAAACATTTTTACAAACCGATACCTTTCTCTTTCTCTACTTTCTTGTGTAGTGAGAAGGTGCATGTGTAGAGTAGTATCCCTTAGCAAATCTTGTTTACTTGTTCAGCCCATTTAGTTTAGGATGGATGTATTTGGCATTCTATGCAAGAGATAGATGGTATATGGATTCGAAGGTGATGTAAGCATCTGTCTTATTTTCCGATTTGCAGCAGTCTGTAAATTATCCGCTGATATGCTTGTTAGCTGAAAATAGAGATGATTGTTGATAGATCTAAAATCCGGAGTGATTGACATGGAAAGGCAATGGTTTGTTCATGATGCAATCTTTTCTTTTGATTAGCATAATCTCAAATTCTGAATTTCACTAATCTATTTAGTAGATTTATTGGTGAAATACAAGTTATTTTTGTTTTGAGAAAA TGTGAGGGACTCGCTCACTCGCCTACGTGGCGCCTTACAATTGGTACTCATGATAAACTCCACGTTATTTTGACATATCGTCACTGCTAAACAATCCAACATTCAACCGGAGTCACCAACTGAACACCGTGTACCAATTCCTCACCGAATACAGAGAAAATCAGAGATACAACAATGGCGGAAAACTCCGATAATCCACCCACCGTCTCCAACCATTCTTCACCACCTAAACCTGCCGAGAATGATCTCAAGCTTCCTCAGGTACCCAATTTGCCTTATTTTCCATCTGTACAACATGGGGGTGTCAATATGATACCGATCATGTACCCCGCACTACTTCCAGGTCTTGCTTCTGCGCAGAACTCAGATCAGAATAACCGTGGACCCGGCATTTATGCTGTACCTATGCTTCCTTTTATGGGTACTGTCGCTGGGATTCCCACTGATACTCTTATTCCTCTTACATACAGCACACCAACGAGAAGGACCTCTTCTGAGGCTGGAACTACTAACGGGGAGCAAGGCCAGATGAACCAGCAGCAGCCTCAACAGCTTGGAGCTCAACGACAGATTGTTGTACGGAGATTTCAGATAGCATTCCAGCTTGACTTGCTGCTCATATTAAAGTTGGCAGCTGTGATCTTTATATTTAACCAAGATGGTTCAAGACAAAGGCTTGCTCTACTTGTGTTCTTTGCATTTATCGTCTACTTATACCAGACTGGAGCTTTAACTCCACTTATGCGTTGGATATCACAAGCAATGCACAGGGCAGCTGCTCCTCCTCGACAACCAAGGCCTGTTGCCAGGGTTGACCCGGTTGTTGGACAAGGGAATAATAACGTTGTTGCAGCTGCTGCTGAGCATCAACCTGGAGCAGAGAACGGCAATCCACCAGCAGATGGTGCAGAACGTGTAGTTGAAAATGAAGAGGCTCCTGAGGCAGGAGTTGAAGGAGGCAACCACTGGTGGGGTATCGTAAAAGAGATTCAGATGATAGTTTTTGGCTTCATCACCTCTCTCCTCCCCGGATTCCATAACATGGATCATCCCTAAAGGGCTTATGGACTAACCAAATTGCTCCACCCTGCAGCGAAAACAACTTTACATGTCGAAGTGGGGGATTAAGCCGTATACCTGTCAAACATTTTTACAAACCGATACCTTTCTCTTTCTCTACTTTCTTGTGTAGTGAGAAGGTGCATGTGTAGAGTAGTATCCCTTAGCAAATCTTGTTTACTTGTTCAGCCCATTTAGTTTAGGATGGATGTATTTGGCATTCTATGCAAGAGATAGATGGTATATGGATTCGAAGGTGATGTAAGCATCTGTCTTATTTTCCGATTTGCAGCAGTCTGTAAATTATCCGCTGATATGCTTGTTAGCTGAAAATAGAGATGATTGTTGATAGATCTAAAATCCGGAGTGATTGACATGGAAAGGCAATGGTTTGTTCATGATGCAATCTTTTCTTTTGATTAGCATAATCTCAAATTCTGAATTTCACTAATCTATTTAGTAGATTTATTGGTGAAATACAAGTTATTTTTGTTTTGAGAAAA ATGGCGGAAAACTCCGATAATCCACCCACCGTCTCCAACCATTCTTCACCACCTAAACCTGCCGAGAATGATCTCAAGCTTCCTCAGGTACCCAATTTGCCTTATTTTCCATCTGTACAACATGGGGGTGTCAATATGATACCGATCATGTACCCCGCACTACTTCCAGGTCTTGCTTCTGCGCAGAACTCAGATCAGAATAACCGTGGACCCGGCATTTATGCTGTACCTATGCTTCCTTTTATGGGTACTGTCGCTGGGATTCCCACTGATACTCTTATTCCTCTTACATACAGCACACCAACGAGAAGGACCTCTTCTGAGGCTGGAACTACTAACGGGGAGCAAGGCCAGATGAACCAGCAGCAGCCTCAACAGCTTGGAGCTCAACGACAGATTGTTGTACGGAGATTTCAGATAGCATTCCAGCTTGACTTGCTGCTCATATTAAAGTTGGCAGCTGTGATCTTTATATTTAACCAAGATGGTTCAAGACAAAGGCTTGCTCTACTTGTGTTCTTTGCATTTATCGTCTACTTATACCAGACTGGAGCTTTAACTCCACTTATGCGTTGGATATCACAAGCAATGCACAGGGCAGCTGCTCCTCCTCGACAACCAAGGCCTGTTGCCAGGGTTGACCCGGTTGTTGGACAAGGGAATAATAACGTTGTTGCAGCTGCTGCTGAGCATCAACCTGGAGCAGAGAACGGCAATCCACCAGCAGATGGTGCAGAACGTGTAGTTGAAAATGAAGAGGCTCCTGAGGCAGGAGTTGAAGGAGGCAACCACTGGTGGGGTATCGTAAAAGAGATTCAGATGATAGTTTTTGGCTTCATCACCTCTCTCCTCCCCGGATTCCATAACATGGATCATCCCTAA MAENSDNPPTVSNHSSPPKPAENDLKLPQVPNLPYFPSVQHGGVNMIPIMYPALLPGLASAQNSDQNNRGPGIYAVPMLPFMGTVAGIPTDTLIPLTYSTPTRRTSSEAGTTNGEQGQMNQQQPQQLGAQRQIVVRRFQIAFQLDLLLILKLAAVIFIFNQDGSRQRLALLVFFAFIVYLYQTGALTPLMRWISQAMHRAAAPPRQPRPVARVDPVVGQGNNNVVAAAAEHQPGAENGNPPADGAERVVENEEAPEAGVEGGNHWWGIVKEIQMIVFGFITSLLPGFHNMDHP Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo24878.1 vs. NCBI nr
Match: gi|902217993|gb|KNA17936.1| (hypothetical protein SOVF_075370 [Spinacia oleracea]) HSP 1 Score: 574.7 bits (1480), Expect = 9.200e-161 Identity = 292/293 (99.66%), Postives = 293/293 (100.00%), Query Frame = 1
BLAST of Spo24878.1 vs. NCBI nr
Match: gi|731354114|ref|XP_010688410.1| (PREDICTED: uncharacterized protein LOC104902356 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 451.1 bits (1159), Expect = 1.500e-123 Identity = 238/295 (80.68%), Postives = 262/295 (88.81%), Query Frame = 1
BLAST of Spo24878.1 vs. NCBI nr
Match: gi|590581671|ref|XP_007014411.1| (Uncharacterized protein TCM_039439 [Theobroma cacao]) HSP 1 Score: 334.3 bits (856), Expect = 2.100e-88 Identity = 194/300 (64.67%), Postives = 224/300 (74.67%), Query Frame = 1
BLAST of Spo24878.1 vs. NCBI nr
Match: gi|823258022|ref|XP_012461715.1| (PREDICTED: uncharacterized protein LOC105781751 [Gossypium raimondii]) HSP 1 Score: 324.3 bits (830), Expect = 2.200e-85 Identity = 189/299 (63.21%), Postives = 217/299 (72.58%), Query Frame = 1
BLAST of Spo24878.1 vs. NCBI nr
Match: gi|595864023|ref|XP_007211696.1| (hypothetical protein PRUPE_ppa009235mg [Prunus persica]) HSP 1 Score: 323.2 bits (827), Expect = 4.800e-85 Identity = 185/302 (61.26%), Postives = 213/302 (70.53%), Query Frame = 1
BLAST of Spo24878.1 vs. UniProtKB/TrEMBL
Match: A0A0K9REL3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_075370 PE=4 SV=1) HSP 1 Score: 574.7 bits (1480), Expect = 6.400e-161 Identity = 292/293 (99.66%), Postives = 293/293 (100.00%), Query Frame = 1
BLAST of Spo24878.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BTD2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g198020 PE=4 SV=1) HSP 1 Score: 451.1 bits (1159), Expect = 1.100e-123 Identity = 238/295 (80.68%), Postives = 262/295 (88.81%), Query Frame = 1
BLAST of Spo24878.1 vs. UniProtKB/TrEMBL
Match: A0A061GQ93_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_039439 PE=4 SV=1) HSP 1 Score: 334.3 bits (856), Expect = 1.500e-88 Identity = 194/300 (64.67%), Postives = 224/300 (74.67%), Query Frame = 1
BLAST of Spo24878.1 vs. UniProtKB/TrEMBL
Match: A0A0D2VI08_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G243400 PE=4 SV=1) HSP 1 Score: 324.3 bits (830), Expect = 1.500e-85 Identity = 189/299 (63.21%), Postives = 217/299 (72.58%), Query Frame = 1
BLAST of Spo24878.1 vs. UniProtKB/TrEMBL
Match: M5X1G1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009235mg PE=4 SV=1) HSP 1 Score: 323.2 bits (827), Expect = 3.300e-85 Identity = 185/302 (61.26%), Postives = 213/302 (70.53%), Query Frame = 1
BLAST of Spo24878.1 vs. TAIR (Arabidopsis)
Match: AT4G29960.1 (unknown protein) HSP 1 Score: 253.1 bits (645), Expect = 2.200e-67 Identity = 157/282 (55.67%), Postives = 186/282 (65.96%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo24878.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo24878.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo24878.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo24878.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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