Spo24915 (gene)

Overview
NameSpo24915
Typegene
OrganismSpinacia oleracea (Spinach)
Description60S ribosomal protein L32-1
Locationchr1 : 30228293 .. 30230822 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTTCCAAAATTAGACAAGAAGATCATTAAGAAGCGGGTGAAGCAGTTCAAGCGCCCGCAACATGACAGACGGATGTGTGTCAAGGTATATACTTTCACATCCTTCATTTCTGCAACTTTTTCATCTTAAATTTAGCTTTTTTGATTGCTCAAATGTTTAAAAATTTGGAAGAAAAGTAAATTTTTGTTGGATTTCATTGCTAGTAGTCGTGAATTGCAGTGATAATGGTTTAATTTCTAGTGTTTGGTATTATTGTTGACATGAAGTTTACATGAGCTGGTTGCATAAATGTAAGCTAAGTAAATTACGGAATGTGTTTTTTTGGCGTAAATGAGTGTATTGGTGATCTAGTTTATGAAAATAGTTGGATATAGAGGCGAAGTGTTTTTGACATGATGAATGGCGGTGTCTGATGTTTTTCGGGTAAATTAGTGTATTTTATTGAGATTTTTGTCAAGGGTATTGATAACGTGGTCAAATCTGCGTTTTGTATTTATACGTTTGATTAAAATCCCTCTATTATGAATTGATAATATAGTCTCCTTGAACTTGGGAACCCTGTGGATTCATTTCATATTTGGTTTTAAACCTGCTGTCCTCCCTCTATCATGGATTCGTGATGAATATAACGCTTTTATGCAGAATCTCGTTTATTAATTTTTGTACGAAATCATATTTTCATTATAAGAGAAGTTGATCTCATGGTCAGAGAATGCATGGGTGAATATCATAAGCAGTATGTTGGTGTATATGTTGGTTCTTGTTTATCGGGTAAAGTATGCACTCACTTACCTGTCTTAGTGTGATTTGGAAGTACTTCACTATTTAAAGTTGATTTTTTTCAATAAAAGTTTGTTGGTTACTGGGTCTTAATTTTCATTTGTATATTTATAACAAAAATTCAGCTGTGTAATTGTTTTATACTTCGTGTTAGTTTTTCTGAACAGAGCGTCATAAAACTACCCNCTATTTAAAGTTGATTTTTTTCAATAAAAGTTTGTTGGTTACTGGGTCTTAATTTTCATTTGTATATTTATAACAAAAATTCAGCTGTGTAATTGTTTTATACTTCGTGTTAGTTTTTCTGAACAGAGCGTCATAAAACTACCCGGTTAGCAGTTGTTACCAAGCTTAAAACTAATTCTGATGTAGAGTGTCATAGTTCAGCGCTTTAGCCTTTTCTAGTAGATTTGTTTTACCATGTGTTATCTGCTTGACGCCTTGACCTATATGTATTCCACGTGGGTGTAATTTCAGCTAGAATGTGTTAGTTTTAGGTGCATTATACAAGTTTGTAAAACTAGTAATCTAATGTACAATCTGAGCTATGCATTAATCACTGGGCTCCTCGCTATCCAGAGTTGAGATATTAAGTTTGTGGGTTGTCATGATTAGTTGNCATTAATCACTGGGCTCCTCGCTATCCAGAGTTGAGATATTAAGTTTGTGGGTTGTCATGATTAGTTGTGGCCTTGTGGGCACATGTCTTTGATATGATATTCATGCTGCCAGGGTTGTAAGTTTTCTGCAAATGCTAGCTTCACAACTGTTGGGGCTAGCCTTTGGATAAATGTTATGTTCTAAAAAATACCCCTATGAGAACTGGTCTTTCTATGTCTTGCCCAGAAGGGTTGGTTTATAAATGTTATGTTCTAAAAAATACCCCTATGAGAACTGGTCTTTCTATGTCTTGCCCAGAAGGGTTGTGTAAAATTGATTTGTGTTTACTTTATGTTTAGAATTAAGATACTATGGGTGATTCTGATGCATTTTTATGTGTTATTTAAAACCTGAGCGGTCTATAAGTTGGGCTTATAGAGTTCAATCTCCTAGAGGCATTGGGCTCAGTTGGGCTTATAGAGTTCAATCCCCATGCTTGTGTCATTTTAGAGGCATTGTTTCTCCCGTTCCCTTTCCCTGTATTATTATGTGGTTGTTTCCAGTCAAATGTCTTCGTCTCCCCCTCTATCCTATGAGAGGAGCGTGTGTTAAGAGACAATAAATTTCCAAAGAATAATAATCTGCTGTCCTATTTGATTAAGAAGTGCTTCTCTCAAATTTGTAATTTGTCTGTTAATCTGAATGGTTGTCCCCTGCAGACTAACTGGCGTAGGCCAAAGGGTATTGATTCACGAGTGAGGAGAAAGTTTAAGGGAGTTACTTTGATGCCCAACATTGGTTATGGTTCTGACAAAAAGACTAGGCACTTTCTTCCCAATGGCTTCAAGAAGTTCGTCGTCCACAATGTCAGCGATCTGGAACTTCTTATGATGCATAATCGGTAACAAATAGATTTCCCCCCTTCAACTTTCTTCCTCTTAATCCCTTTCACTGTGTAATTATTTATTGAGTGTGTTTTCTGGCTAATATCCAACTTTCTTTCCAAACTTTTAGGACATACTGCGCCGAAATAGCCCACAATATCTCCACCAAGAAAAGGAAGGATATTGTTGAGCGTGCAGCCCAGCTAGATGTGGTCGTCATTAACAAACTTGCTCGCTTGCGTAGCCAGGAAGACGAGTAA

mRNA sequence

ATGGCGGTTCCAAAATTAGACAAGAAGATCATTAAGAAGCGGGTGAAGCAGTTCAAGCGCCCGCAACATGACAGACGGATGTGTGTCAAGACTAACTGGCGTAGGCCAAAGGGTATTGATTCACGAGTGAGGAGAAAGTTTAAGGGAGTTACTTTGATGCCCAACATTGGTTATGGTTCTGACAAAAAGACTAGGCACTTTCTTCCCAATGGCTTCAAGAAGTTCGTCGTCCACAATGTCAGCGATCTGGAACTTCTTATGATGCATAATCGGACATACTGCGCCGAAATAGCCCACAATATCTCCACCAAGAAAAGGAAGGATATTGTTGAGCGTGCAGCCCAGCTAGATGTGGTCGTCATTAACAAACTTGCTCGCTTGCGTAGCCAGGAAGACGAGTAA

Coding sequence (CDS)

ATGGCGGTTCCAAAATTAGACAAGAAGATCATTAAGAAGCGGGTGAAGCAGTTCAAGCGCCCGCAACATGACAGACGGATGTGTGTCAAGACTAACTGGCGTAGGCCAAAGGGTATTGATTCACGAGTGAGGAGAAAGTTTAAGGGAGTTACTTTGATGCCCAACATTGGTTATGGTTCTGACAAAAAGACTAGGCACTTTCTTCCCAATGGCTTCAAGAAGTTCGTCGTCCACAATGTCAGCGATCTGGAACTTCTTATGATGCATAATCGGACATACTGCGCCGAAATAGCCCACAATATCTCCACCAAGAAAAGGAAGGATATTGTTGAGCGTGCAGCCCAGCTAGATGTGGTCGTCATTAACAAACTTGCTCGCTTGCGTAGCCAGGAAGACGAGTAA

Protein sequence

MAVPKLDKKIIKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGSDKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVVINKLARLRSQEDE
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo24915.1Spo24915.1mRNA


Homology
[Close]
BLAST of Spo24915.1 vs. NCBI nr
Match: gi|902213767|gb|KNA17331.1| (hypothetical protein SOVF_080870 [Spinacia oleracea])

HSP 1 Score: 266.9 bits (681), Expect = 1.900e-68
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1 

		  

Query: 1   MAVPKLDKKIIKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 60
           MAVPKLDKKIIKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS
Sbjct: 1   MAVPKLDKKIIKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 60

Query: 61  DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 120
           DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV
Sbjct: 61  DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 120

Query: 121 INKLARLRSQEDE 134
           INKLARLRSQEDE
Sbjct: 121 INKLARLRSQEDE 133
[Close]
BLAST of Spo24915.1 vs. NCBI nr
Match: gi|902228282|gb|KNA21043.1| (hypothetical protein SOVF_046840 [Spinacia oleracea])

HSP 1 Score: 263.1 bits (671), Expect = 2.700e-67
Identity = 131/133 (98.50%), Postives = 132/133 (99.25%), Query Frame = 1 

		  

Query: 1   MAVPKLDKKIIKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 60
           MAVPKL KKI+KKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS
Sbjct: 1   MAVPKLVKKIVKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 60

Query: 61  DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 120
           DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV
Sbjct: 61  DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 120

Query: 121 INKLARLRSQEDE 134
           INKLARLRSQEDE
Sbjct: 121 INKLARLRSQEDE 133
[Close]
BLAST of Spo24915.1 vs. NCBI nr
Match: gi|902205155|gb|KNA15105.1| (hypothetical protein SOVF_101290, partial [Spinacia oleracea])

HSP 1 Score: 259.2 bits (661), Expect = 3.900e-66
Identity = 127/133 (95.49%), Postives = 133/133 (100.00%), Query Frame = 1 

		  

Query: 1   MAVPKLDKKIIKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 60
           MAVPKL+KKI+KKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS
Sbjct: 29  MAVPKLEKKIVKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 88

Query: 61  DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 120
           DKKTRH+LPNGFKKFVV+NVS+LELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLD+VV
Sbjct: 89  DKKTRHYLPNGFKKFVVNNVSELELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDIVV 148

Query: 121 INKLARLRSQEDE 134
           INKLARLRSQEDE
Sbjct: 149 INKLARLRSQEDE 161
[Close]
BLAST of Spo24915.1 vs. NCBI nr
Match: gi|731319339|ref|XP_010670205.1| (PREDICTED: 60S ribosomal protein L32-1-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 247.7 bits (631), Expect = 1.200e-62
Identity = 121/133 (90.98%), Postives = 130/133 (97.74%), Query Frame = 1 

		  

Query: 1   MAVPKLDKKIIKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 60
           MAVP LDKKI+KKRVK+FKRPQHDR++CVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS
Sbjct: 1   MAVPLLDKKIVKKRVKKFKRPQHDRKICVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 60

Query: 61  DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 120
           DKKTRHFLPNGFKKFVV+NVS+LELLMMHNRTYCAEIAHNISTKKRK+IVERAAQLD+VV
Sbjct: 61  DKKTRHFLPNGFKKFVVNNVSELELLMMHNRTYCAEIAHNISTKKRKEIVERAAQLDIVV 120

Query: 121 INKLARLRSQEDE 134
            NKLARL S+EDE
Sbjct: 121 TNKLARLASREDE 133
[Close]
BLAST of Spo24915.1 vs. NCBI nr
Match: gi|731352610|ref|XP_010687630.1| (PREDICTED: 60S ribosomal protein L32-1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 246.5 bits (628), Expect = 2.600e-62
Identity = 122/133 (91.73%), Postives = 127/133 (95.49%), Query Frame = 1 

		  

Query: 1   MAVPKLDKKIIKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 60
           MAVP LDKKI+KKRVK+FKRPQ DR++ VKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS
Sbjct: 1   MAVPLLDKKIVKKRVKKFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 60

Query: 61  DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 120
           DKKTRHFLPNGFKKFVVHNV DLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLD+ V
Sbjct: 61  DKKTRHFLPNGFKKFVVHNVGDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDICV 120

Query: 121 INKLARLRSQEDE 134
            NKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133
[Close]
BLAST of Spo24915.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RCT8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_080870 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.300e-68
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1 

		  

Query: 1   MAVPKLDKKIIKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 60
           MAVPKLDKKIIKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS
Sbjct: 1   MAVPKLDKKIIKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 60

Query: 61  DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 120
           DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV
Sbjct: 61  DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 120

Query: 121 INKLARLRSQEDE 134
           INKLARLRSQEDE
Sbjct: 121 INKLARLRSQEDE 133
[Close]
BLAST of Spo24915.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RNJ3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_046840 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 1.900e-67
Identity = 131/133 (98.50%), Postives = 132/133 (99.25%), Query Frame = 1 

		  

Query: 1   MAVPKLDKKIIKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 60
           MAVPKL KKI+KKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS
Sbjct: 1   MAVPKLVKKIVKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 60

Query: 61  DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 120
           DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV
Sbjct: 61  DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 120

Query: 121 INKLARLRSQEDE 134
           INKLARLRSQEDE
Sbjct: 121 INKLARLRSQEDE 133
[Close]
BLAST of Spo24915.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R6H6_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_101290 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 2.700e-66
Identity = 127/133 (95.49%), Postives = 133/133 (100.00%), Query Frame = 1 

		  

Query: 1   MAVPKLDKKIIKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 60
           MAVPKL+KKI+KKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS
Sbjct: 29  MAVPKLEKKIVKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 88

Query: 61  DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 120
           DKKTRH+LPNGFKKFVV+NVS+LELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLD+VV
Sbjct: 89  DKKTRHYLPNGFKKFVVNNVSELELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDIVV 148

Query: 121 INKLARLRSQEDE 134
           INKLARLRSQEDE
Sbjct: 149 INKLARLRSQEDE 161
[Close]
BLAST of Spo24915.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CYS5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g039920 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 8.100e-63
Identity = 121/133 (90.98%), Postives = 130/133 (97.74%), Query Frame = 1 

		  

Query: 1   MAVPKLDKKIIKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 60
           MAVP LDKKI+KKRVK+FKRPQHDR++CVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS
Sbjct: 1   MAVPLLDKKIVKKRVKKFKRPQHDRKICVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 60

Query: 61  DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 120
           DKKTRHFLPNGFKKFVV+NVS+LELLMMHNRTYCAEIAHNISTKKRK+IVERAAQLD+VV
Sbjct: 61  DKKTRHFLPNGFKKFVVNNVSELELLMMHNRTYCAEIAHNISTKKRKEIVERAAQLDIVV 120

Query: 121 INKLARLRSQEDE 134
            NKLARL S+EDE
Sbjct: 121 TNKLARLASREDE 133
[Close]
BLAST of Spo24915.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EKG6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g191530 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 1.800e-62
Identity = 122/133 (91.73%), Postives = 127/133 (95.49%), Query Frame = 1 

		  

Query: 1   MAVPKLDKKIIKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 60
           MAVP LDKKI+KKRVK+FKRPQ DR++ VKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS
Sbjct: 1   MAVPLLDKKIVKKRVKKFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 60

Query: 61  DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 120
           DKKTRHFLPNGFKKFVVHNV DLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLD+ V
Sbjct: 61  DKKTRHFLPNGFKKFVVHNVGDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDICV 120

Query: 121 INKLARLRSQEDE 134
            NKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133
[Close]
BLAST of Spo24915.1 vs. ExPASy Swiss-Prot
Match: RL321_ARATH (60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2)

HSP 1 Score: 226.1 bits (575), Expect = 2.300e-58
Identity = 111/133 (83.46%), Postives = 122/133 (91.73%), Query Frame = 1 

		  

Query: 1   MAVPKLDKKIIKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 60
           MAVP L KK++KKR  +F RPQ DRR+ VK +WRRPKGIDSRVRRKFKGVTLMPN+GYGS
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 120
           DKKTRH+LPNGFKKFVVHN S+LELLMMHNRTYCAEIAHN+STKKRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVV 120

Query: 121 INKLARLRSQEDE 134
            N+LARLRSQEDE
Sbjct: 121 TNRLARLRSQEDE 133
[Close]
BLAST of Spo24915.1 vs. ExPASy Swiss-Prot
Match: RL322_ARATH (60S ribosomal protein L32-2 OS=Arabidopsis thaliana GN=RPL32B PE=2 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 3.900e-58
Identity = 111/133 (83.46%), Postives = 121/133 (90.98%), Query Frame = 1 

		  

Query: 1   MAVPKLDKKIIKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 60
           MAVP L KK++KKR  +F RPQ DRR+ VK +WRRPKGIDSRVRRKFKGVTLMPN+GYGS
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 120
           DKKTRH+LPNGFKKF+VHN S+LELLMMHNRTYCAEIAHNISTKKRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVV 120

Query: 121 INKLARLRSQEDE 134
            NKL RLRSQEDE
Sbjct: 121 SNKLGRLRSQEDE 133
[Close]
BLAST of Spo24915.1 vs. ExPASy Swiss-Prot
Match: RL32_MACFA (60S ribosomal protein L32 OS=Macaca fascicularis GN=RPL32 PE=2 SV=3)

HSP 1 Score: 173.3 bits (438), Expect = 1.700e-42
Identity = 84/130 (64.62%), Postives = 108/130 (83.08%), Query Frame = 1 

		  

Query: 4   PKLDKKIIKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGSDKK 63
           P +  KI+KKR K+F R Q DR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KK
Sbjct: 6   PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKK 65

Query: 64  TRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVVINK 123
           T+H LP+GF+KF+VHNV +LE+L+M N++YCAEIAHN+S+K RK IVERAAQL + V N 
Sbjct: 66  TKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNP 125

Query: 124 LARLRSQEDE 134
            ARLRS+E+E
Sbjct: 126 NARLRSEENE 135
[Close]
BLAST of Spo24915.1 vs. ExPASy Swiss-Prot
Match: RL32_HUMAN (60S ribosomal protein L32 OS=Homo sapiens GN=RPL32 PE=1 SV=2)

HSP 1 Score: 173.3 bits (438), Expect = 1.700e-42
Identity = 84/130 (64.62%), Postives = 108/130 (83.08%), Query Frame = 1 

		  

Query: 4   PKLDKKIIKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGSDKK 63
           P +  KI+KKR K+F R Q DR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KK
Sbjct: 6   PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKK 65

Query: 64  TRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVVINK 123
           T+H LP+GF+KF+VHNV +LE+L+M N++YCAEIAHN+S+K RK IVERAAQL + V N 
Sbjct: 66  TKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNP 125

Query: 124 LARLRSQEDE 134
            ARLRS+E+E
Sbjct: 126 NARLRSEENE 135
[Close]
BLAST of Spo24915.1 vs. ExPASy Swiss-Prot
Match: RL32_MOUSE (60S ribosomal protein L32 OS=Mus musculus GN=Rpl32 PE=1 SV=2)

HSP 1 Score: 173.3 bits (438), Expect = 1.700e-42
Identity = 84/130 (64.62%), Postives = 108/130 (83.08%), Query Frame = 1 

		  

Query: 4   PKLDKKIIKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGSDKK 63
           P +  KI+KKR K+F R Q DR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KK
Sbjct: 6   PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKK 65

Query: 64  TRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVVINK 123
           T+H LP+GF+KF+VHNV +LE+L+M N++YCAEIAHN+S+K RK IVERAAQL + V N 
Sbjct: 66  TKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNP 125

Query: 124 LARLRSQEDE 134
            ARLRS+E+E
Sbjct: 126 NARLRSEENE 135
[Close]
BLAST of Spo24915.1 vs. TAIR (Arabidopsis)
Match: AT4G18100.1 (Ribosomal protein L32e)

HSP 1 Score: 226.1 bits (575), Expect = 1.300e-59
Identity = 111/133 (83.46%), Postives = 122/133 (91.73%), Query Frame = 1 

		  

Query: 1   MAVPKLDKKIIKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 60
           MAVP L KK++KKR  +F RPQ DRR+ VK +WRRPKGIDSRVRRKFKGVTLMPN+GYGS
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 120
           DKKTRH+LPNGFKKFVVHN S+LELLMMHNRTYCAEIAHN+STKKRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVV 120

Query: 121 INKLARLRSQEDE 134
            N+LARLRSQEDE
Sbjct: 121 TNRLARLRSQEDE 133
[Close]
BLAST of Spo24915.1 vs. TAIR (Arabidopsis)
Match: AT5G46430.1 (Ribosomal protein L32e)

HSP 1 Score: 225.3 bits (573), Expect = 2.200e-59
Identity = 111/133 (83.46%), Postives = 121/133 (90.98%), Query Frame = 1 

		  

Query: 1   MAVPKLDKKIIKKRVKQFKRPQHDRRMCVKTNWRRPKGIDSRVRRKFKGVTLMPNIGYGS 60
           MAVP L KK++KKR  +F RPQ DRR+ VK +WRRPKGIDSRVRRKFKGVTLMPN+GYGS
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHFLPNGFKKFVVHNVSDLELLMMHNRTYCAEIAHNISTKKRKDIVERAAQLDVVV 120
           DKKTRH+LPNGFKKF+VHN S+LELLMMHNRTYCAEIAHNISTKKRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVV 120

Query: 121 INKLARLRSQEDE 134
            NKL RLRSQEDE
Sbjct: 121 SNKLGRLRSQEDE 133
The following BLAST results are available for this feature:
BLAST of Spo24915.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902213767|gb|KNA17331.1|1.9e-68100.hypothetical protein SOVF_0808... [more]
gi|902228282|gb|KNA21043.1|2.7e-6798.5hypothetical protein SOVF_0468... [more]
gi|902205155|gb|KNA15105.1|3.9e-6695.4hypothetical protein SOVF_1012... [more]
gi|731319339|ref|XP_010670205.1|1.2e-6290.9PREDICTED: 60S ribosomal prote... [more]
gi|731352610|ref|XP_010687630.1|2.6e-6291.7PREDICTED: 60S ribosomal prote... [more]
back to top
BLAST of Spo24915.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RCT8_SPIOL1.3e-68100.Uncharacterized protein OS=Spi... [more]
A0A0K9RNJ3_SPIOL1.9e-6798.5Uncharacterized protein OS=Spi... [more]
A0A0K9R6H6_SPIOL2.7e-6695.4Uncharacterized protein (Fragm... [more]
A0A0J8CYS5_BETVU8.1e-6390.9Uncharacterized protein OS=Bet... [more]
A0A0J8EKG6_BETVU1.8e-6291.7Uncharacterized protein OS=Bet... [more]
back to top
BLAST of Spo24915.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RL321_ARATH2.3e-5883.460S ribosomal protein L32-1 OS... [more]
RL322_ARATH3.9e-5883.460S ribosomal protein L32-2 OS... [more]
RL32_MACFA1.7e-4264.660S ribosomal protein L32 OS=M... [more]
RL32_HUMAN1.7e-4264.660S ribosomal protein L32 OS=H... [more]
RL32_MOUSE1.7e-4264.660S ribosomal protein L32 OS=M... [more]
back to top
BLAST of Spo24915.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT4G18100.11.3e-5983.4Ribosomal protein L32e[more]
AT5G46430.12.2e-5983.4Ribosomal protein L32e[more]
back to top
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001515Ribosomal protein L32ePRODOMPD003823coord: 20..122
score: 7.0
IPR001515Ribosomal protein L32ePFAMPF01655Ribosomal_L32ecoord: 16..122
score: 9.9
IPR001515Ribosomal protein L32eSMARTSM01393Ribosomal_L32e_2coord: 15..122
score: 9.3
IPR001515Ribosomal protein L32eunknownSSF52042Ribosomal protein L32ecoord: 3..131
score: 8.89
NoneNo IPR availablePANTHERPTHR2341360S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT Ncoord: 1..133
score: 1.2E

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0034968 histone lysine methylation
biological_process GO:0006606 protein import into nucleus
biological_process GO:0051604 protein maturation
biological_process GO:0000278 mitotic cell cycle
biological_process GO:0048507 meristem development
biological_process GO:0000741 karyogamy
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0006094 gluconeogenesis
biological_process GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0009560 embryo sac egg cell differentiation
biological_process GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0006414 translational elongation
biological_process GO:0032508 DNA duplex unwinding
biological_process GO:0006412 translation
biological_process GO:0007010 cytoskeleton organization
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0009640 photomorphogenesis
biological_process GO:0006950 response to stress
biological_process GO:0000478 endonucleolytic cleavage involved in rRNA processing
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0010197 polar nucleus fusion
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0001510 RNA methylation
biological_process GO:0006364 rRNA processing
biological_process GO:0006406 mRNA export from nucleus
biological_process GO:0002943 tRNA dihydrouridine synthesis
biological_process GO:0010498 proteasomal protein catabolic process
biological_process GO:0006396 RNA processing
biological_process GO:0070475 rRNA base methylation
biological_process GO:0030488 tRNA methylation
biological_process GO:0009909 regulation of flower development
biological_process GO:2000072 regulation of defense response to fungus, incompatible interaction
biological_process GO:0000338 protein deneddylation
cellular_component GO:0005829 cytosol
cellular_component GO:0005657 replication fork
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005773 vacuole
cellular_component GO:0005840 ribosome
cellular_component GO:0072588 box H/ACA RNP complex
cellular_component GO:0015030 Cajal body
cellular_component GO:0009507 chloroplast
cellular_component GO:0005730 nucleolus
cellular_component GO:0030687 preribosome, large subunit precursor
cellular_component GO:0005654 nucleoplasm
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005622 intracellular
molecular_function GO:0051536 iron-sulfur cluster binding
molecular_function GO:0008422 beta-glucosidase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0043141 ATP-dependent 5'-3' DNA helicase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0030515 snoRNA binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0008173 RNA methyltransferase activity
molecular_function GO:0017150 tRNA dihydrouridine synthase activity
molecular_function GO:0043021 ribonucleoprotein complex binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0005515 protein binding
RNA-Seq Expression