Spo24935 (gene)

Overview
NameSpo24935
Typegene
OrganismSpinacia oleracea (Spinach)
Description60S ribosomal protein L28
Locationchr1 : 30230867 .. 30234211 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTCAAAAGTAATGGAAAATGAACTTGACTAGTTGAATTGTGTGACTAAAACATTAGTGTTTTTATAGTATCAAATAGCTATGACCTTGATAATACCTAATAATATTTGACAAGCTCCTNCATTAGTGTTTTTATAGTATCAAATAGCTATGACCTTGATAATACCTAATAATATTTGACAAGCTCCTGAGAAGTGAGCATAGTTAATCAGGCTTGTCATCAAAATATGATTTTCAGGTTTAGTTTGGTTAGAGGTTATGGATGTGGACTATTCATTTAGGTACTTATTAGGGTTTGTTACTGAAAACACCTTACTTATAACTGTAGGGTGTGGTGTGCTGCTTTTCTTTCTTTTCCTATCTTAGTTTTTGCTGTGAGGTCGGTTGGCTGTTGTATATACACTATAACAAGTTTGGGTTGCACCAGTTATCCTCATTTTTTCGTATTTGTATTATTGCAGGGATTGCAAACCCCAAGACCGTGTCTGTTCAAGCAGGAGGCAAAGACTCAGTAGTGCTTACTACGACAAAGACCAGGAAGCAGAACAAGCCTACAAGTATGCAACACAAGTCTGCGATGAAGAAAGATTTCAGTAGGATGGTCAAGGCTGTTGAGAACCAGGTAGATTATTATATGCTAATGCTTGGAACTTGCTACTATATTTCTCTTTTAACTTGGGTTTCAGGAACAATCAATGATAATGTATATAGCTTTTTGGTGAATGGGACTACTATTTATTTAATGCTAGTATGTTTGTGTGTGTATTGTGTAGTTCTTTTCATAGCGTCTTGTGTTCGTTTTTAGAGAGTTTATATAGCATGTAGCGTTTTTCAGTAACTGTGTTAGTTGTTTGGATCCTTGAATCCTAGTTCATAATAAGTGTATGCTATCGAATCTGGATGTCATTTAGAGTTCGTTATAAATAATTTGTTATGGTGAGTTTATGTTCCTCCAACTGAGTGTTCTTTGATGCATACACCAAGACGTCATAGGAAGACTTACACGACTTACACCTATATTTCTTTGTTTAATGGAATGATGGTAGATGATGCAATAAAGGCTATTCTGAAGTAAGTTGAAGAATGATGACCTTGTCTTCCTTGGATCCTAATAATTTATGTCACTCTGGAGTTGATGAATGTTACCAGGGAGATTGGGCTGATGTACATTGTTACATAGTTAGGCTACATATGCGTGCTTTATTCAATTTATTCAATAACAATGTGAATATTCAAGTAAATATTCAATTTAACATTTGGTTGGATCATGTCACGCTACAGTTATTATTCTTTTAAATTGTCGAATGATTCAAATCACTAGATTTTCCGGTAAAACAAAACTTCAATTAAACCACACAGAAAAAAATCTTAAACCAAATCATACAGATTTACAAGAACGCATGCATCAGATCAAATCATATGAAAAGGTCAAAATCTTAAAAAATCCAACGCAAATCAGCTTGTCATTTGATTCAGAAACAATTTCTTATTCATATGCAACGAAAACACAGGAAACAATAAAATACTTCCATAAAAAAANTAAAATACTTCCATAAAAAAATGAACCTAATGAACAAATCAGCACATATTTCTATCAAAAAGAAAATAAATCAGATCAAATGAAAAAAGCAGCAAAATCAAATACGATCATTCAACATACATCAAATCACAATCCAGAATTTCAGTCTAGAACTAACAGTCGAATCAAAAATATGATAATCGCAAATGGAAAACAATCATTTAAAAAACAAAAAAGACGAAGAGAGAGAGAATGGACCTTCAGAGTTCCGAGAGCTTTCCAAGAACCCTAGCCGCAGTTGAAGAGAAATAAAATGTGGAGGAAATGCAGCTGAAGCTAGGGTTTTGAAGGGGGGGTGACGTTATTAGTGTAGGTCGTAGGATAATCAATGGTGAATGTGAAAATGACCAAATTGCCGATTTTCTGATTGTGCTTATCCATATGGACCGGGCCGCTGTCCGGGTGTACCAAATCAAAAGATTGGCAGCTACTTTCCTGTCAGACGGCCTGATGCTCACGCGTCTGTCAGACCGTTTGTTTGCCCATGCGCGCGTGATTTCACGCGCAGTATAAATCCTTTTATTTTCCCTCTCCTCTCATTCCTCTCCTGCAGCGACTCAACCTTTCTCCCTCCTCTTCGCTTCCTCCGTTCTAGATTTTCTCCTCTCCTCTCTGCACTCATCTCTCTTTGCCGGAGACAACACCATTTGTGCACCAGAAATCCACGGAGCTCCTCTCCTCGTTTCTCTGCTTAAAAGCCAAAGAAAATCAGACGATAGAGGTGCGACAGTGGTGTGCGGCTGCTACATCGATCTTTCCGCCCTCACACTCGCCAATTTGTCGGCGATCTCTCCTCCCAGCTACCGGAGATGTCAAGAAGATCCGTCGTTTCCGTTTCCGTTTCTTTGAGATTATGTAAGTATATTTTTCATATTCAATTTCGCACTCAAATTGCAGATCTAGGGTTTCGGTTTCTTCGTATGTATCTTAGGTCTCTTAATTACGCTGATGTAGTTGAAATTATTCATTCGAATGTGCATGAAATTATTGATTAAATATACATTTAAGTTAGCTCTTCTTAATTTTAGTTTTGATTTGTGGAATTCTTAGTTATGAATTAAATTAGTTAATAGTTAATAATTTCTCACATTTAGTTATGTTTTGTGGTGTTTAGTTTTCAGTACGAATTAGTTAACAATTTCTCATATTTAGTTATGTTTTTGTGGTGTTTAGTTTTCAGTATGAATTAGTTAATCCATGGTCATATTTAGTTAAGAATTTGCTTTNTTTTGTGGTGTTTAGTTTTCAGTATGAATTAGTTAATCCATGGTCATATTTAGTTAAGAATTTGCTTTGTTTAGTTAAGCTTTGTGGGAGTTGTGGATAGATTTTAGTCTAAAATAACTTAAAAGGATAAAATGTAAGTTTGGAGTAGCAGACAACAGTAGCCTATGAGTCTAGAACTAAGGTTGCCTAGCAAGAAGGTAAAAGTGAGATGTATGCTTAATAGACATAGACAAAGAGAAGTATGTAATCTTTAAAACAAAGAGAACTAATACATGAAGGTACTGTAAAACCGTGGTACCTTCAACTCTTCAAGCAAGAAAAGTAAATATAATAGTGTAATCACATTCCTTACTGAATAATTCATAATAGCATAAGATTTTCTTTGCCCTGTGGTTGCTTGCGGGACATGTGCCTTTACGCGACAACATGTGAATGGCATATGCCCTCTTTGGGTTGCTTAAATCTTGTTCTTTTCTATGTATGAGTAACACGCAGGAATAAGACCTGCAGTGTGGTAGCTTCCTCTACTGGTTAG

mRNA sequence

ATGAAGTTCAAAAGGATTGCAAACCCCAAGACCGTGTCTGTTCAAGCAGGAGGCAAAGACTCAGTAGTGCTTACTACGACAAAGACCAGGAAGCAGAACAAGCCTACAAGTATGCAACACAAGTCTGCGATGAAGAAAGATTTCAGTAGGATGGTCAAGGCTGTTGAGAACCAGATTTTCTCCTCTCCTCTCTGCACTCATCTCTCTTTGCCGGAGACAACACCATTTGTGCACCAGAAATCCACGGAGCTCCTCTCCTCGTTTCTCTGCTTAAAAGCCAAAGAAAATCAGACGATAGAGGTGCGACAGTGGTGTGCGGCTGCTACATCGATCTTTCCGCCCTCACACTCGCCAATTTGTCGGCGATCTCTCCTCCCAGCTACCGGAGATGTCAAGAAGATCCGTCGTTTCCGTTTCCGTTTCTTTGAGATTATGAATAAGACCTGCAGTGTGGTAGCTTCCTCTACTGGTTAG

Coding sequence (CDS)

ATGAAGTTCAAAAGGATTGCAAACCCCAAGACCGTGTCTGTTCAAGCAGGAGGCAAAGACTCAGTAGTGCTTACTACGACAAAGACCAGGAAGCAGAACAAGCCTACAAGTATGCAACACAAGTCTGCGATGAAGAAAGATTTCAGTAGGATGGTCAAGGCTGTTGAGAACCAGATTTTCTCCTCTCCTCTCTGCACTCATCTCTCTTTGCCGGAGACAACACCATTTGTGCACCAGAAATCCACGGAGCTCCTCTCCTCGTTTCTCTGCTTAAAAGCCAAAGAAAATCAGACGATAGAGGTGCGACAGTGGTGTGCGGCTGCTACATCGATCTTTCCGCCCTCACACTCGCCAATTTGTCGGCGATCTCTCCTCCCAGCTACCGGAGATGTCAAGAAGATCCGTCGTTTCCGTTTCCGTTTCTTTGAGATTATGAATAAGACCTGCAGTGTGGTAGCTTCCTCTACTGGTTAG

Protein sequence

MKFKRIANPKTVSVQAGGKDSVVLTTTKTRKQNKPTSMQHKSAMKKDFSRMVKAVENQIFSSPLCTHLSLPETTPFVHQKSTELLSSFLCLKAKENQTIEVRQWCAAATSIFPPSHSPICRRSLLPATGDVKKIRRFRFRFFEIMNKTCSVVASSTG
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo24935.1Spo24935.1mRNA


Homology
[Close]
BLAST of Spo24935.1 vs. NCBI nr
Match: gi|731357196|ref|XP_010690079.1| (PREDICTED: 60S ribosomal protein L28-1-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 93.2 bits (230), Expect = 4.300e-16
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 1 

		  

Query: 2   KFKRIANPKTVSVQAGGKDSVVLTTTKTRKQNKPTSMQHKSAMKKDFSRMVKAVENQI 60
           K+  IANPKTV+VQ  GKDSVVLTTTKTRKQNKP S+QHKS MKKDF RMVKAVENQ+
Sbjct: 47  KYSGIANPKTVAVQPAGKDSVVLTTTKTRKQNKPASLQHKSVMKKDFRRMVKAVENQV 104
[Close]
BLAST of Spo24935.1 vs. NCBI nr
Match: gi|902221846|gb|KNA19028.1| (hypothetical protein SOVF_065070 [Spinacia oleracea])

HSP 1 Score: 89.4 bits (220), Expect = 6.300e-15
Identity = 52/77 (67.53%), Postives = 54/77 (70.13%), Query Frame = 1 

		  

Query: 2   KFKRIANPKTVSVQAGGKDS-------------------VVLTTTKTRKQNKPTSMQHKS 60
           K+  IANPKTVSVQAGGKDS                   VVLTTTKTRKQNKP SMQHKS
Sbjct: 47  KYSGIANPKTVSVQAGGKDSVVLTTTKTRKQNKPGSKDSVVLTTTKTRKQNKPGSMQHKS 106
[Close]
BLAST of Spo24935.1 vs. NCBI nr
Match: gi|470102137|ref|XP_004287515.1| (PREDICTED: 60S ribosomal protein L28-1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 80.5 bits (197), Expect = 2.900e-12
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1 

		  

Query: 2   KFKRIANPKTVSVQAGGKD-SVVLTTTKTRKQNKPTSMQHKSAMKKDFSRMVKAVENQIF 61
           K   +AN KTVS+QAGGKD SVVL TTKTRKQNKP SM HKS M+K+FSRM KAV NQ+ 
Sbjct: 47  KHSGLANKKTVSIQAGGKDHSVVLATTKTRKQNKPASMVHKSVMRKEFSRMAKAVTNQVV 106

Query: 62  SS 63
           ++
Sbjct: 107 AN 108
[Close]
BLAST of Spo24935.1 vs. NCBI nr
Match: gi|728843710|gb|KHG23153.1| (60S ribosomal L28-1 -like protein [Gossypium arboreum])

HSP 1 Score: 76.6 bits (187), Expect = 4.200e-11
Identity = 38/59 (64.41%), Postives = 51/59 (86.44%), Query Frame = 1 

		  

Query: 2   KFKRIANPKTVSVQAGGKD-SVVLTTTKTRKQNKPTSMQHKSAMKKDFSRMVKAVENQI 60
           K+  +AN KTV++Q+GGKD SV+L TTKT+KQNKP+++ HKSAMKK+F RM KAV+NQ+
Sbjct: 47  KYSGLANKKTVTIQSGGKDQSVLLATTKTKKQNKPSTLLHKSAMKKEFPRMAKAVKNQV 105
[Close]
BLAST of Spo24935.1 vs. NCBI nr
Match: gi|728840255|gb|KHG19698.1| (60S ribosomal L28-1 -like protein [Gossypium arboreum])

HSP 1 Score: 76.6 bits (187), Expect = 4.200e-11
Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = 1 

		  

Query: 2   KFKRIANPKTVSVQAGGKD-SVVLTTTKTRKQNKPTSMQHKSAMKKDFSRMVKAVENQI- 61
           K   +AN KTV++Q+GGKD SV+L TTKT+KQNKP+++ HKS MKK+F RM KAV+NQ+ 
Sbjct: 47  KHSGLANKKTVTIQSGGKDQSVLLATTKTKKQNKPSTLLHKSFMKKEFPRMAKAVKNQVT 106

Query: 62  --FSSPLCTHLSLPETTPFVHQKSTELLSSFLCLKAKENQTIEVRQW 105
             +  P  T  +L   +  VH+      S    +K +  Q ++VR W
Sbjct: 107 DNYYRPDLTKAALARLSA-VHRSLKVAKSG---VKKRNRQALKVRGW 149
[Close]
BLAST of Spo24935.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BNV1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g211490 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.000e-16
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 1 

		  

Query: 2   KFKRIANPKTVSVQAGGKDSVVLTTTKTRKQNKPTSMQHKSAMKKDFSRMVKAVENQI 60
           K+  IANPKTV+VQ  GKDSVVLTTTKTRKQNKP S+QHKS MKKDF RMVKAVENQ+
Sbjct: 47  KYSGIANPKTVAVQPAGKDSVVLTTTKTRKQNKPASLQHKSVMKKDFRRMVKAVENQV 104
[Close]
BLAST of Spo24935.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RHQ5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_065070 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.400e-15
Identity = 52/77 (67.53%), Postives = 54/77 (70.13%), Query Frame = 1 

		  

Query: 2   KFKRIANPKTVSVQAGGKDS-------------------VVLTTTKTRKQNKPTSMQHKS 60
           K+  IANPKTVSVQAGGKDS                   VVLTTTKTRKQNKP SMQHKS
Sbjct: 47  KYSGIANPKTVSVQAGGKDSVVLTTTKTRKQNKPGSKDSVVLTTTKTRKQNKPGSMQHKS 106
[Close]
BLAST of Spo24935.1 vs. UniProtKB/TrEMBL
Match: A0A0B0NYW9_GOSAR (60S ribosomal L28-1-like protein OS=Gossypium arboreum GN=F383_24276 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.900e-11
Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = 1 

		  

Query: 2   KFKRIANPKTVSVQAGGKD-SVVLTTTKTRKQNKPTSMQHKSAMKKDFSRMVKAVENQI- 61
           K   +AN KTV++Q+GGKD SV+L TTKT+KQNKP+++ HKS MKK+F RM KAV+NQ+ 
Sbjct: 47  KHSGLANKKTVTIQSGGKDQSVLLATTKTKKQNKPSTLLHKSFMKKEFPRMAKAVKNQVT 106

Query: 62  --FSSPLCTHLSLPETTPFVHQKSTELLSSFLCLKAKENQTIEVRQW 105
             +  P  T  +L   +  VH+      S    +K +  Q ++VR W
Sbjct: 107 DNYYRPDLTKAALARLSA-VHRSLKVAKSG---VKKRNRQALKVRGW 149
[Close]
BLAST of Spo24935.1 vs. UniProtKB/TrEMBL
Match: A0A0B0P8U6_GOSAR (60S ribosomal L28-1-like protein OS=Gossypium arboreum GN=F383_01194 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.900e-11
Identity = 38/59 (64.41%), Postives = 51/59 (86.44%), Query Frame = 1 

		  

Query: 2   KFKRIANPKTVSVQAGGKD-SVVLTTTKTRKQNKPTSMQHKSAMKKDFSRMVKAVENQI 60
           K+  +AN KTV++Q+GGKD SV+L TTKT+KQNKP+++ HKSAMKK+F RM KAV+NQ+
Sbjct: 47  KYSGLANKKTVTIQSGGKDQSVLLATTKTKKQNKPSTLLHKSAMKKEFPRMAKAVKNQV 105
[Close]
BLAST of Spo24935.1 vs. UniProtKB/TrEMBL
Match: V7BZL0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G161300g PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.800e-11
Identity = 39/59 (66.10%), Postives = 48/59 (81.36%), Query Frame = 1 

		  

Query: 2   KFKRIANPKTVSVQAGGKD-SVVLTTTKTRKQNKPTSMQHKSAMKKDFSRMVKAVENQI 60
           K+  +AN KTV++QA GKD SVVL TTKT+KQNKP S+ HKS MKK+F RM KAV+NQ+
Sbjct: 47  KYSGLANKKTVTIQAAGKDQSVVLATTKTKKQNKPASLLHKSVMKKEFRRMAKAVQNQV 105
[Close]
BLAST of Spo24935.1 vs. ExPASy Swiss-Prot
Match: RL282_ARATH (60S ribosomal protein L28-2 OS=Arabidopsis thaliana GN=RPL28C PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.700e-9
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1 

		  

Query: 2   KFKRIANPKTVSVQAGGKDS-VVLTTTKTRKQNKPTSMQHKSAMKKDFSRMVKAVENQI 60
           K   +AN KTV++QA GKD  VVL TTKT++QNKP    +KS +KK+FSRM K V NQ+
Sbjct: 47  KHSGLANKKTVTIQAAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQV 105
[Close]
BLAST of Spo24935.1 vs. ExPASy Swiss-Prot
Match: RL281_ARATH (60S ribosomal protein L28-1 OS=Arabidopsis thaliana GN=RPL28A PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.500e-8
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1 

		  

Query: 2   KFKRIANPKTVSVQAGGKD-SVVLTTTKTRKQNKPTSMQHKSAMKKDFSRMVKAVENQI 60
           K   +AN KTV++QA  KD +VVL TTKT+KQNKP    +KS +KK+F RM KAV NQ+
Sbjct: 47  KHSGLANKKTVTIQAADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQV 105
[Close]
BLAST of Spo24935.1 vs. TAIR (Arabidopsis)
Match: AT4G29410.1 (Ribosomal L28e protein family)

HSP 1 Score: 61.6 bits (148), Expect = 4.900e-10
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1 

		  

Query: 2   KFKRIANPKTVSVQAGGKDS-VVLTTTKTRKQNKPTSMQHKSAMKKDFSRMVKAVENQI 60
           K   +AN KTV++QA GKD  VVL TTKT++QNKP    +KS +KK+FSRM K V NQ+
Sbjct: 47  KHSGLANKKTVTIQAAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQV 105
[Close]
BLAST of Spo24935.1 vs. TAIR (Arabidopsis)
Match: AT2G19730.1 (Ribosomal L28e protein family)

HSP 1 Score: 60.8 bits (146), Expect = 8.400e-10
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1 

		  

Query: 2   KFKRIANPKTVSVQAGGKD-SVVLTTTKTRKQNKPTSMQHKSAMKKDFSRMVKAVENQI 60
           K   +AN KTV++QA  KD +VVL TTKT+KQNKP    +KS +KK+F RM KAV NQ+
Sbjct: 47  KHSGLANKKTVTIQAADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQV 105
The following BLAST results are available for this feature:
BLAST of Spo24935.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|731357196|ref|XP_010690079.1|4.3e-1681.0PREDICTED: 60S ribosomal prote... [more]
gi|902221846|gb|KNA19028.1|6.3e-1567.5hypothetical protein SOVF_0650... [more]
gi|470102137|ref|XP_004287515.1|2.9e-1269.3PREDICTED: 60S ribosomal prote... [more]
gi|728843710|gb|KHG23153.1|4.2e-1164.460S ribosomal L28-1 -like prot... [more]
gi|728840255|gb|KHG19698.1|4.2e-1144.860S ribosomal L28-1 -like prot... [more]
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BLAST of Spo24935.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0J8BNV1_BETVU3.0e-1681.0Uncharacterized protein OS=Bet... [more]
A0A0K9RHQ5_SPIOL4.4e-1567.5Uncharacterized protein OS=Spi... [more]
A0A0B0NYW9_GOSAR2.9e-1144.860S ribosomal L28-1-like prote... [more]
A0A0B0P8U6_GOSAR2.9e-1164.460S ribosomal L28-1-like prote... [more]
V7BZL0_PHAVU3.8e-1166.1Uncharacterized protein OS=Pha... [more]
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BLAST of Spo24935.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RL282_ARATH8.7e-957.660S ribosomal protein L28-2 OS... [more]
RL281_ARATH1.5e-857.660S ribosomal protein L28-1 OS... [more]
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BLAST of Spo24935.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT4G29410.14.9e-1057.6Ribosomal L28e protein family[more]
AT2G19730.18.4e-1057.6Ribosomal L28e protein family[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002672Ribosomal protein L28ePANTHERPTHR1054460S RIBOSOMAL PROTEIN L28coord: 2..59
score: 8.6
NoneNo IPR availablePANTHERPTHR10544:SF1SUBFAMILY NOT NAMEDcoord: 2..59
score: 8.6

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006826 iron ion transport
biological_process GO:0044030 regulation of DNA methylation
biological_process GO:0009909 regulation of flower development
biological_process GO:0009266 response to temperature stimulus
biological_process GO:0006412 translation
biological_process GO:0032482 Rab protein signal transduction
biological_process GO:0006897 endocytosis
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0010106 cellular response to iron ion starvation
biological_process GO:0015706 nitrate transport
biological_process GO:0042742 defense response to bacterium
biological_process GO:0010167 response to nitrate
biological_process GO:0006970 response to osmotic stress
biological_process GO:0008152 metabolic process
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0016567 protein ubiquitination
biological_process GO:0031347 regulation of defense response
biological_process GO:0061025 membrane fusion
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0000902 cell morphogenesis
biological_process GO:0006334 nucleosome assembly
biological_process GO:0006338 chromatin remodeling
biological_process GO:0008654 phospholipid biosynthetic process
biological_process GO:0044237 cellular metabolic process
biological_process GO:0006457 protein folding
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0009058 biosynthetic process
biological_process GO:0016049 cell growth
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0009987 cellular process
cellular_component GO:0044425 membrane part
cellular_component GO:0005840 ribosome
cellular_component GO:0000785 chromatin
cellular_component GO:0005622 intracellular
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0005773 vacuole
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0000786 nucleosome
cellular_component GO:0005783 endoplasmic reticulum
molecular_function GO:0019003 GDP binding
molecular_function GO:0005525 GTP binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0004842 ubiquitin-protein transferase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0005515 protein binding
molecular_function GO:0016746 transferase activity, transferring acyl groups
molecular_function GO:0004683 calmodulin-dependent protein kinase activity
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0050662 coenzyme binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003682 chromatin binding
RNA-Seq Expression