Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GAAAGCAGGAATTATAAGAAAGAAAAATTACAAAAAGGCGTCGGTGAGAGATAAAACCGCAAGGATCTTCGGAGTTGTAGAGAGAGAAAGAAAGAGAGAGTGTTAGAGAGAGAAAGTTGAGAAACAGAGAAAATTTAGAGGTATTTCTATATAATATAGATCAAAGCTTGAGGTCTGAATTTCTCCAAACTCCATCAACAACAAAAGAGGAGAGAGAAAGTGGTGCAAAGTTTTGGGGTGGCACCAATTTGAAGCGGCTTTCAGAGCCCCCCAAAAAAAATTCAATTGAAAAATAAATAAACAAATAAAATGGGGGAATTTTGCAGCACTGATTCAGTTTCCGTTGATATGGAAACTATTTATCTTGGTGGAAAGGTTTTAATTCTTGCACTAATTCATCGAATTTCAAGCCCAATGTGCAATTTGATTCAATTTTATTTTTTTTGGGGGAAATTTTGGTTTTTGTTACTGTTCTTGAATTTCTGGGGTTTTAATATTGGTTTAACAGATCTTGTTGTAATTTTACTGGGTTTTTTTTAATTGGATTTCCCCCCCCCCAAATGCATTGAATTGTTTGATTGGTAAACCCCTAATTTAGAATTTTTTCCCCTATGATTGGCAACATGATAGTGTAAGGAGTTGCAATTTTGTGATTGTTTCCAGCATTTTTGGAATTCTATGTCTGATAATTGGGTCTTTGAAATTCTTAATTTAGTGGTATTTGTGTAATTTTAATTCAATTTGTGTTGTTTAACTAGTATTCTACTTGAATTTTGCTAGGGTAGCTTTACCCTCTTGAATTGCTGCCTTTTCTTTCTTGTTTGTCATCTTGGGATAACTAAATGTGGTTGGTAATTATTGAAAATTCTTAATTTTGTTGTTGTAATTGTCAGTCTAATTACATTTGGAAAATGGGGTTGTTGTTCATAATTACTACCATTTTACTCTTAATAATACGCGTACAAAGGATGGAGGGAGTAATATTATGCTTGATGTTAGTACACAAGACACTAAACTGTCAATATTCTTGAATTTACATGATTTATGCTTATATTCCTATATGCTTTTGACTTTCTAAATAATTATTCATTTCAGTAAATGTTTTCCCCCCTGAAAACTTATTGTCAGCTTTTTGTAGAATCTGTCATCATCACTTTTATTCTCCTCTTTTACTTTTTTTAATTGGCAAAGTAAAGTATTTTTTTTCTTTTTTTGTAGTTGTTGGGTTAGAACTTGAAGTAAAGCATCATATGGTTTGAATTAGATTCTTAGCCTCTTATAGAAGGGATTGAAGTTGTATAGATTTATTTTTGTTTCTGGAAAGAAGTCAGAGAATTAGTTGCAATATTGCACATGGCAAGCTACTTTTTTTGTTGAAATTCTATCTGTTATTCCTCCTTTTGTTGTCTATCACATAACAAGAAGCTATGGATATTGCTTTACTTTATTCATTTTTAATGGAAGTAATAACATGACAAATCATCTCTTTTGACTTTATCTAAGTGTCATTTTTTTGGCAATAAGATCATAGATTATGCATTTTTCTGTAGTGAGTTTCTGGCGATTAGTTCCGTTTACTGAATTGAGATGCTGATATCTTATCGTTCTTCCACGTTCTATGAGTTTTTTTTTCTGCTTTTTAATGATGTATTATGTCAATTTTTGATTGCAGGAATACCACGTACAAACAGGCTGTGGCCCTGTGTCTGTCATTGTTTATGGAGATAAAGACAAGCCAGCATTGGTTACATATCCTGATTTAGCTTTAAATCGTAAGTGATATTGATGAATTCTCATTTTTAACTTGAAGTTATTGGTAACGATAGTATCATTGTAATGACGGGATTTGCACAACCTAGAACATAAAGTTGTTTGCTGCTATCTTAACATGCAAGTTCTGAACTGATACTGATCATGTATTGTTGTGATATAAGGAACTGGTAAAGATTCACAAACTGAGTATCATGATTTAAGTTCAAGCATGGGTGTTCTTCAAGGTCGGATGGGTAGTTGTTCAGTTTTACTATTACGAATAGTCTTTGAAGTTGAATTTCATGATTTATACTCTTTTTTTTTCTCTCTTTCTTCTTACATTTTAATTTAATTCGTAAGAATCATAACTCTCATTTCCTGCCTTTGGTACTATTTGACTAATTCCTTGTGACTACTGAACAGAAATGTCTTGTTTCCAAGGATTATTCTTTTTTCCTGAGGCCGCTTCTTTGCTGCTCCACAACTTTTGCATTTACCATATTAGCCCTCCTGGACACGAGGTCTGTAAATCTTCGTATATGGGTTCCTTTATCTTTTTCTTTATTGGTCTTCTTTTTTCTGAAATCTTTCTTTTTTCTGCTCTATTTAGACGACTTTGTTCAATTATTCACATTTACCTTATGAAACTCTTGTCAAGAGTTCTTGCAGTTGGGAGCTGCTGCTTTATGTCCAGATAAACCTGTGCCATCAACAGAAGATTTAGCCGATCAGGTCCTTGAGGTTCTCAACTTTTTTGGGTAAGCTAGGGTCAAATGGGATTCAATTCATTTTGTTTGTTTAGGATCTTTTACCAAAGTGACTACTCTTACAATTTTAATTACCAAAATGACTATTTTAAAAGTCTATTTTCCAAACTAGCTAAAATTTATTTACCAAAATGACTATTTTAAAAATCTATTTTCCAAACTAGCTATATTTTATATAGTGAACCGGTTTTTTGGGGTTTCTTAATTCATCTTTTATTTTTATCTACTTTATACTCCTAATTGATTTTTTTTCCTTTTTTCCTGTAAATAATTTAAAATCATGCTCCTGATATTGTAATTTCGGTACATACACCATAGTAGTAAATTCAAATACAAACAAAAGCAAGAGTGTGTGTGTCTCAACTGATATTTTATCATTGGTGCTGTTTCTCGTAACTATTTAGTTTTTTTTTTGACAATGGTAACTATTTAGTTGCTTTATGTTAGTTAATTCTGACAGCAATTTTCCTTGTTTAGGCTTGGTGCAGTAATGTGCATGGGGGTAACCGCAGGAGCTTACATACTTACCCAATTTGCTGTATGTTGTTTTTAATTCCTTACCCAATTTGCTGTATATTGTTTTTAATTCCTTAATGTGTTTGAATAAGTTCTTTAGCTGAGTGGCTAATTGACAAAGGTTATTGGTGTTACAGCTGAAGTACAAAGAGCGTGTTGTTGGTTTGATACTTGTTTCACCTCTGTGCAAAGGACCTTCATGGACTGAATGGTTGTACAATAAGGTCCTTTTCCTTTCTCTGTCCTATACTATATTTTCCACAGAAAAAAAATTGTGTCCTTATGTACTGTATTATAAATTCTGAATCTGTTAATTTATCGATTAATATAGGTTTTGTCGAATTTGCTTTACTTTTACGGGATATGTGGCTTGGTCAAGGAGTGTTTGCTGAAGCGCTACTTCAGTAAGGTAGTACTTAACTTTTTAGGTTCTCGTTTACACCAGTAATTGCCTTTGTGGTAGTTTGTTTTGAACTTTTACTATATACAGGAAGTTCGTGGCAGTGCAGAACTCCCGGAATCAGACATAGTTCAAGCATGCAGGAGGGTTAGTGTTAATTATTTTTATTTTTTTTTGGAAAATATGTTCTTTCTTTTTCTAGTGCATTTTTTCTTGTTTTCCCCTCTAATTGGACCATGACGCGTTAACTGACTGCTTATCGCTTCAGTTGTTGGATGAGAGGCAAAGCATCAATGTTTTACGGTTTCTTGAGACAATGAATGGGTAAGTTCTATTGCAAGAGTTTGCATTTCAAGTTCCCACCTTTTATTAATTAATTTATTATACACTTTTCTTTTTTTGCATATTTTTAATCCTTTTGTTTTCCTGTTTTGTTTAAACAAGCAGAAGACCCGACATTAGCGAAGGATTGAAAAAACTAAGATGTCGGACACTGATTTTTGTTGGGGATGAATCTTCTTTTCACGCAGAAGCTCTTCACATGATTTCAAAACTAGATAAAAGATGCAGTGCATTGGTTGAGGTATGTGCATGGAACTAAGTTCACTTGAAACTCGCTTTCATTGTGGTTAACCTAGTTTGATGAGTCTTTCATTTCAAGATTATCTAATTTTGGTAGATTGCATGAACATTTTCTGTCCATTTAGGAATCAGTTAAGCTGGTCATTTGTGATGTAGATGTTGTTCATCTTTCCCTTCATTATCCGCCAAGGATGTTGCTTACATGGGGTTGATGTGTTGGTAGGTACAAGCTTGTGGATCAATGGTGACGGAGGAGCAACCCCATGCGATGCTGATACCATTGGAATTCTTCCTCATGGGATACGGATTCTACCGGCCATCTCAGCTAAGTGGAAGCCCAAGAAGCCCGTTAAGCCCATCGTGCATTTCCCCGGAGTTGCTTTCTCCGGAAAGCATGGGGTTGAAGCTGAAACCGATAAAGACTCGCATTTCTTTGCAGTCATAGCAATGGGTGATGAACTGATGATGTAATGTAAAAGATGTATTTTTACCAGCAATTTCCACTCTTTTTCTGTTGTAATTTTTATCATAATTTTTTGGAATCGCGATTCGCGAAAGGAAGGGTGGTGGGTTGGAAGATTTGTAGATATGTAATGTAGGATTGTTTTTGATAGAAAAAGGGACATTTTATTTTAGGGAGGGAATCGATCATTCATTCATTTGTAGTCTGTCATTCATAAAACGACCGGACATTGGTTATTTGCTTGTAAATTCTTAGAACACCTTTGTTGATGATGAGCAATTAATAATGAAAAGAGCATATTTATGTATTTTTTCT GAAAGCAGGAATTATAAGAAAGAAAAATTACAAAAAGGCGTCGGTGAGAGATAAAACCGCAAGGATCTTCGGAGTTGTAGAGAGAGAAAGAAAGAGAGAGTGTTAGAGAGAGAAAGTTGAGAAACAGAGAAAATTTAGAGGTATTTCTATATAATATAGATCAAAGCTTGAGGTCTGAATTTCTCCAAACTCCATCAACAACAAAAGAGGAGAGAGAAAGTGGTGCAAAGTTTTGGGGTGGCACCAATTTGAAGCGGCTTTCAGAGCCCCCCAAAAAAAATTCAATTGAAAAATAAATAAACAAATAAAATGGGGGAATTTTGCAGCACTGATTCAGTTTCCGTTGATATGGAAACTATTTATCTTGGTGGAAAGGAATACCACGTACAAACAGGCTGTGGCCCTGTGTCTGTCATTGTTTATGGAGATAAAGACAAGCCAGCATTGGTTACATATCCTGATTTAGCTTTAAATCAAATGTCTTGTTTCCAAGGATTATTCTTTTTTCCTGAGGCCGCTTCTTTGCTGCTCCACAACTTTTGCATTTACCATATTAGCCCTCCTGGACACGAGTTGGGAGCTGCTGCTTTATGTCCAGATAAACCTGTGCCATCAACAGAAGATTTAGCCGATCAGGTCCTTGAGGTTCTCAACTTTTTTGGGCTTGGTGCAGTAATGTGCATGGGGGTAACCGCAGGAGCTTACATACTTACCCAATTTGCTCTGAAGTACAAAGAGCGTGTTGTTGGTTTGATACTTGTTTCACCTCTGTGCAAAGGACCTTCATGGACTGAATGGTTGTACAATAAGGTTTTGTCGAATTTGCTTTACTTTTACGGGATATGTGGCTTGGTCAAGGAGTGTTTGCTGAAGCGCTACTTCAGTAAGGAAGTTCGTGGCAGTGCAGAACTCCCGGAATCAGACATAGTTCAAGCATGCAGGAGGTTGTTGGATGAGAGGCAAAGCATCAATGTTTTACGGTTTCTTGAGACAATGAATGGAAGACCCGACATTAGCGAAGGATTGAAAAAACTAAGATGTCGGACACTGATTTTTGTTGGGGATGAATCTTCTTTTCACGCAGAAGCTCTTCACATGATTTCAAAACTAGATAAAAGATGCAGTGCATTGGTTGAGGTACAAGCTTGTGGATCAATGGTGACGGAGGAGCAACCCCATGCGATGCTGATACCATTGGAATTCTTCCTCATGGGATACGGATTCTACCGGCCATCTCAGCTAAGTGGAAGCCCAAGAAGCCCGTTAAGCCCATCGTGCATTTCCCCGGAGTTGCTTTCTCCGGAAAGCATGGGGTTGAAGCTGAAACCGATAAAGACTCGCATTTCTTTGCAGTCATAGCAATGGGTGATGAACTGATGATGTAATGTAAAAGATGTATTTTTACCAGCAATTTCCACTCTTTTTCTGTTGTAATTTTTATCATAATTTTTTGGAATCGCGATTCGCGAAAGGAAGGGTGGTGGGTTGGAAGATTTGTAGATATGTAATGTAGGATTGTTTTTGATAGAAAAAGGGACATTTTATTTTAGGGAGGGAATCGATCATTCATTCATTTGTAGTCTGTCATTCATAAAACGACCGGACATTGGTTATTTGCTTGTAAATTCTTAGAACACCTTTGTTGATGATGAGCAATTAATAATGAAAAGAGCATATTTATGTATTTTTTCT ATGGGGGAATTTTGCAGCACTGATTCAGTTTCCGTTGATATGGAAACTATTTATCTTGGTGGAAAGGAATACCACGTACAAACAGGCTGTGGCCCTGTGTCTGTCATTGTTTATGGAGATAAAGACAAGCCAGCATTGGTTACATATCCTGATTTAGCTTTAAATCAAATGTCTTGTTTCCAAGGATTATTCTTTTTTCCTGAGGCCGCTTCTTTGCTGCTCCACAACTTTTGCATTTACCATATTAGCCCTCCTGGACACGAGTTGGGAGCTGCTGCTTTATGTCCAGATAAACCTGTGCCATCAACAGAAGATTTAGCCGATCAGGTCCTTGAGGTTCTCAACTTTTTTGGGCTTGGTGCAGTAATGTGCATGGGGGTAACCGCAGGAGCTTACATACTTACCCAATTTGCTCTGAAGTACAAAGAGCGTGTTGTTGGTTTGATACTTGTTTCACCTCTGTGCAAAGGACCTTCATGGACTGAATGGTTGTACAATAAGGTTTTGTCGAATTTGCTTTACTTTTACGGGATATGTGGCTTGGTCAAGGAGTGTTTGCTGAAGCGCTACTTCAGTAAGGAAGTTCGTGGCAGTGCAGAACTCCCGGAATCAGACATAGTTCAAGCATGCAGGAGGTTGTTGGATGAGAGGCAAAGCATCAATGTTTTACGGTTTCTTGAGACAATGAATGGAAGACCCGACATTAGCGAAGGATTGAAAAAACTAAGATGTCGGACACTGATTTTTGTTGGGGATGAATCTTCTTTTCACGCAGAAGCTCTTCACATGATTTCAAAACTAGATAAAAGATGCAGTGCATTGGTTGAGGTACAAGCTTGTGGATCAATGGTGACGGAGGAGCAACCCCATGCGATGCTGATACCATTGGAATTCTTCCTCATGGGATACGGATTCTACCGGCCATCTCAGCTAAGTGGAAGCCCAAGAAGCCCGTTAAGCCCATCGTGCATTTCCCCGGAGTTGCTTTCTCCGGAAAGCATGGGGTTGAAGCTGAAACCGATAAAGACTCGCATTTCTTTGCAGTCATAG MGEFCSTDSVSVDMETIYLGGKEYHVQTGCGPVSVIVYGDKDKPALVTYPDLALNQMSCFQGLFFFPEAASLLLHNFCIYHISPPGHELGAAALCPDKPVPSTEDLADQVLEVLNFFGLGAVMCMGVTAGAYILTQFALKYKERVVGLILVSPLCKGPSWTEWLYNKVLSNLLYFYGICGLVKECLLKRYFSKEVRGSAELPESDIVQACRRLLDERQSINVLRFLETMNGRPDISEGLKKLRCRTLIFVGDESSFHAEALHMISKLDKRCSALVEVQACGSMVTEEQPHAMLIPLEFFLMGYGFYRPSQLSGSPRSPLSPSCISPELLSPESMGLKLKPIKTRISLQS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo24976.1 vs. NCBI nr
Match: gi|902194605|gb|KNA12589.1| (hypothetical protein SOVF_124500 [Spinacia oleracea]) HSP 1 Score: 712.6 bits (1838), Expect = 3.400e-202 Identity = 349/349 (100.00%), Postives = 349/349 (100.00%), Query Frame = 1
BLAST of Spo24976.1 vs. NCBI nr
Match: gi|731373048|ref|XP_010666529.1| (PREDICTED: pollen-specific protein SF21-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 662.5 bits (1708), Expect = 4.000e-187 Identity = 320/345 (92.75%), Postives = 333/345 (96.52%), Query Frame = 1
BLAST of Spo24976.1 vs. NCBI nr
Match: gi|1012092635|ref|XP_015955231.1| (PREDICTED: pollen-specific protein SF21-like isoform X1 [Arachis duranensis]) HSP 1 Score: 604.4 bits (1557), Expect = 1.300e-169 Identity = 282/343 (82.22%), Postives = 319/343 (93.00%), Query Frame = 1
BLAST of Spo24976.1 vs. NCBI nr
Match: gi|659099901|ref|XP_008450831.1| (PREDICTED: pollen-specific protein SF21 [Cucumis melo]) HSP 1 Score: 599.7 bits (1545), Expect = 3.200e-168 Identity = 288/341 (84.46%), Postives = 313/341 (91.79%), Query Frame = 1
BLAST of Spo24976.1 vs. NCBI nr
Match: gi|566214634|ref|XP_006371981.1| (Ndr family protein [Populus trichocarpa]) HSP 1 Score: 598.6 bits (1542), Expect = 7.100e-168 Identity = 284/343 (82.80%), Postives = 317/343 (92.42%), Query Frame = 1
BLAST of Spo24976.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QZ97_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_124500 PE=4 SV=1) HSP 1 Score: 712.6 bits (1838), Expect = 2.300e-202 Identity = 349/349 (100.00%), Postives = 349/349 (100.00%), Query Frame = 1
BLAST of Spo24976.1 vs. UniProtKB/TrEMBL
Match: A0A0J8DYU6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_002640 PE=4 SV=1) HSP 1 Score: 662.5 bits (1708), Expect = 2.800e-187 Identity = 320/345 (92.75%), Postives = 333/345 (96.52%), Query Frame = 1
BLAST of Spo24976.1 vs. UniProtKB/TrEMBL
Match: B9N5G7_POPTR (Ndr family protein OS=Populus trichocarpa GN=POPTR_0018s06900g PE=4 SV=1) HSP 1 Score: 598.6 bits (1542), Expect = 4.900e-168 Identity = 284/343 (82.80%), Postives = 317/343 (92.42%), Query Frame = 1
BLAST of Spo24976.1 vs. UniProtKB/TrEMBL
Match: D7TBA3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g02490 PE=4 SV=1) HSP 1 Score: 597.8 bits (1540), Expect = 8.400e-168 Identity = 282/344 (81.98%), Postives = 322/344 (93.60%), Query Frame = 1
BLAST of Spo24976.1 vs. UniProtKB/TrEMBL
Match: A0A0R0JZV5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G222800 PE=4 SV=1) HSP 1 Score: 597.0 bits (1538), Expect = 1.400e-167 Identity = 284/343 (82.80%), Postives = 315/343 (91.84%), Query Frame = 1
BLAST of Spo24976.1 vs. ExPASy Swiss-Prot
Match: SF21_HELAN (Pollen-specific protein SF21 OS=Helianthus annuus GN=SF21 PE=2 SV=1) HSP 1 Score: 481.1 bits (1237), Expect = 1.000e-134 Identity = 231/343 (67.35%), Postives = 273/343 (79.59%), Query Frame = 1
BLAST of Spo24976.1 vs. ExPASy Swiss-Prot
Match: NDRG2_HUMAN (Protein NDRG2 OS=Homo sapiens GN=NDRG2 PE=1 SV=2) HSP 1 Score: 137.9 bits (346), Expect = 2.100e-31 Identity = 88/303 (29.04%), Postives = 148/303 (48.84%), Query Frame = 1
BLAST of Spo24976.1 vs. ExPASy Swiss-Prot
Match: NDRG2_PONAB (Protein NDRG2 OS=Pongo abelii GN=NDRG2 PE=2 SV=2) HSP 1 Score: 136.7 bits (343), Expect = 4.800e-31 Identity = 87/303 (28.71%), Postives = 148/303 (48.84%), Query Frame = 1
BLAST of Spo24976.1 vs. ExPASy Swiss-Prot
Match: NDRG2_BOVIN (Protein NDRG2 OS=Bos taurus GN=NDRG2 PE=2 SV=1) HSP 1 Score: 136.0 bits (341), Expect = 8.100e-31 Identity = 85/302 (28.15%), Postives = 148/302 (49.01%), Query Frame = 1
BLAST of Spo24976.1 vs. ExPASy Swiss-Prot
Match: NDRG2_RAT (Protein NDRG2 OS=Rattus norvegicus GN=Ndrg2 PE=1 SV=1) HSP 1 Score: 136.0 bits (341), Expect = 8.100e-31 Identity = 86/303 (28.38%), Postives = 148/303 (48.84%), Query Frame = 1
BLAST of Spo24976.1 vs. TAIR (Arabidopsis)
Match: AT5G56750.1 (N-MYC downregulated-like 1) HSP 1 Score: 566.2 bits (1458), Expect = 1.400e-161 Identity = 270/341 (79.18%), Postives = 307/341 (90.03%), Query Frame = 1
BLAST of Spo24976.1 vs. TAIR (Arabidopsis)
Match: AT2G19620.1 (N-MYC downregulated-like 3) HSP 1 Score: 521.9 bits (1343), Expect = 3.000e-148 Identity = 243/338 (71.89%), Postives = 293/338 (86.69%), Query Frame = 1
BLAST of Spo24976.1 vs. TAIR (Arabidopsis)
Match: AT5G11790.1 (N-MYC downregulated-like 2) HSP 1 Score: 518.5 bits (1334), Expect = 3.300e-147 Identity = 249/342 (72.81%), Postives = 297/342 (86.84%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo24976.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo24976.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo24976.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo24976.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|