Spo25050 (gene)

Overview
NameSpo25050
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr3 : 14182025 .. 14188108 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATACTGCTGCTCCAAAGTTGCTACTTGTGTGTTCTTTTCATACTTGTGAAAACCATTTCATAATCTCTGTTTCTGAGTTTTCACTTTTCTCACTGGTCATCACCATCTATACCTTGTCATTTGATATCATTTGCATTTAAGTCCTTAGGGGAGTAGTTCTCTGAGTTTCCTGAGATGAAAACTAGGAACAAAATACTTGCTGATGCAAAACTATCTTAATTGGGAAATTGGAAGCAGTTTAGGGAATTGAATTTATGAGAGGGTGAGTCATTCATAAATGGTGGGAAGTCGTTGGTGATGGAGCCCATTACGGAATGTTGGATGGTAAATGTAACGAAACATAAAGGGGTAGTGCTATTATTATTTGTTCACAGATGGTCTCATGGCTCGTACTCACTAAAAGATTGAATGCGATGCTTCATTTTGCCTATGTATGTCTTCAATTCTGTGAATTATATTCCTGAATTTTATAAACGATGTTGTTGCTTGAAGGTCACATGATATAAGAGGATTCTCAAGTTTGGAAGCATCACCAATCTGGCCGATGTATCTTGTCCTAACTTGGACAAAGACCAGTAGTAAGTACTGTGAGGCCTGGAAGTTGCTTGAGGTAGATGATTAGACCACTTGATCAATGGCCTCATCTTCGATATTTCGAGGCAATAGAAGTTAAAGATCCACTGTATTTAGTCTTTTAATTAATGCCTTCTGTTGCAATGCTGTCATTTATATGTCACTGCCAGTTTTCTGGGGTTCTGTCACAATTTTAAGATCTTATATTTCCTCTCTTTTTTATTCCATTCTGTTGGCCATTGTCTGCCATAAAAGGGTGATTTGATTATTTATTCATGTAGTCATGACTGCCAATGAAATGTACCTAGTAAATGAAAGAATTCCTCTGAAATTTATGTCTGTTTGATTTCCAGGACATTCAACCTCTTGCATAAACTTAAATTGTGGAACATGAACGATTTTACAAAAGGAAACTACAGCAGTTACTTCAATGCACGAAGTTGGTGGTTCTCCTTGACAATGGTGATCGAAATTAGTATAATCATCTATTCTTTAGACAGCCAAGATGCGTCCTTGACTCGCTATTTGGATTAAGGAAGGCCAATCCTTTCGTGTACCACTCAATCACTTTCTCCTGCAATCAGGTATCAGCATATTCATCAGTAATTACAGTACTATAACTTTGATAGTGCAATATAGTGAGTTCATTGACTAGAGGCGTTAGTGGTAGAAACAACGAAAAATAGTTGATTGGACGTGTTTTAGATTCGTGTACCTCTTGGCAAGTTACGCTTATGTTTGGGACTGAGAAGGATGTTTCTAGCTTTTTGCAGCTCACTTATTGCTTCACTTATCTTCATCCGATCACGTGGTAAATGACTTGAGCAAGCAACTCCAATCTTTATCACCGACACCATGCACTCCTCTGTTTTTCGAAGCATTTCATGGGGTTTTGGTCCCCTTTTGTCAGGTTCGTCACTTTCATCCTCCATTAGTGTAGAGTCAACAATATGTAGCACTTGGTGAGGCAATGCTGCCTTTGCAAACATATGGAGGTTGAAATCTTCCTTGAACATATTATCGGTTGGTCTCCTTTTTGTCATTAGCTCAAGCAGTAAGATTCCGTAACTGTATAGATCAGCTTCAGGGGATGCTTCACCTCCCAAGCCGTACTCTAGGACAAATAAAATTATATCCAAAGTTAAAACTCAAATACCTATACTTGCTTATAATTTGTTAGTTTCTGTATCCTCAGTCCTTGATTAGTTTATCAATTTTCTTTTGATATTTGATTTCACAAAGCAAGGAGTTAATTATGATTAAATAAATTTCTTTGATGACAAAAAAGCTTCATGTTATATCCTAGAATTAGGGGAAAAAAAAAGTTTAGGTACAAAAAGAGGATAATATATGCTTTTGGTTATCTAATGAGCCAATTAAGATAAAGTTATTAAGATGTCATGAACTGAAGAAAAAATATACCCTTTAAGCAAAATAATTACCTGGAGCGGCATAGCCAACAGTCCCCCTGACTCCAATTGAACTGCTTTGGTTTGGGTGGAGGGGTTGACCAAGAACCTTTGCTAACCCGAAATCTCCGACATGGGCAACCATGTCATTATCAAGCAATATGTTGTTTGGTTTAAGGTCGCAGTGCACTATCGGGGTTTCACACTCACATTGGAGATAGTTGAGTGCATGAGCCACGTCAATGGCTATATTCACCCTTTGGAGAAGGCTCAGGTAACCACTTTTATATAACCATTTATCAAGACTTCCATTGGGCATGAACTCATAGACAAGAGCTTTGAAATCATTTCTTTTGAAGTCTATACTTGAGCAAGCTGTTAGTATCCCAACCAGATTACGGTGACGAATATACCTTAATGCCTCACACTCTGCCATGAAACTCTTAGACCCACCTCGTTGTTGCAAGTTGAGTACTTTTACTGCCACTGTCTTTCCATCAAGAATCCCTTTGAAAACAGATCCAAAAGTACCCGAACCGAGTAGATTTTCTTGAGAAAATCCATCTGTTGCTTTGAGTAGCATGTCATATGATACTTTCAAGAACCTCTCCTTTACTAGTGCGTCTGATGAAGAAGTAGATTTTCTTTTTTTGCTCTGACCTTTCAAGTATAGCCATATGCATATCGCCATGACCAACACCCCAACAAATGCACTAGCCGTTATAATTGTCAGCTTGAGAGCACGAGACATTCTCCTTTTCTTCCTTTCATTCTCCACACATCTTGGTAGGTGTAGCTTAGAACTTCCTCCACAAAGGTTTTTGTTACCAACAAAAGATGTTGCACTTGAATTTGCAAAAACTCCTTTTGTTGGAACTCTTCCCTCGAAATTGTTGTGAGATAAGTTTAAGACTATCAACGGAAAAGTAGCAAAATATTCTGGAACGGGTCCAGAAAGATTGTTCTGAGAAAGATCAAGTTTCAAAAGGCTTTTTAAAGAGGCAAATGATGGAGGAATAAGACCATGGAAGAAATTATCTTCCATGTATAATTCTTGTAGAGCAGGTAAACTGCTAAAGACATCCGGAATACTCCCAAAAAATTTATTATTTGACATTGAAAACACTTCTAAATTTATTTGCTTGCTAATCTCCATAGTTAGAGGCCCTTGAAAATGATTTTGATCTAACCATAATTGAATGAAGTTTGTAGTTTTTGCAAACAGCTCAATGGGTAAGGAACCATTGAATTGATTATATGATAAATACAAGTATAACAAGTTTGCACAATTACCAAGGCTTGAAGGTACTCTGCCTTGCAACTTATTTTCATAAAAATTGAGATTGCTCAAATGCGATAAATTTCCGAATGAACTGGGAATTTCACCTGTTAGTCTATTGAAACTTAGATCTAGAATCTCTAGATTTTGAAGCTCCCCAAGATCTCGAGGAACGGTTCCTGTTAGGCCACTTGATTTCATGGATAAAATCCTAAGATTGTTTAGATTACCAAGACCTACAGGGATTCCTCCAGTGACTTGATTTCCTTCAATCCAAATCTCAATTAAATTGGTTGAAAGATTAGCCAGAACTTTTGGAACTAATCCTGTGAATTGGTTGTTCCCCACATCCAGGCTTTCCAATTTGCTACAGTTAACTAGTTTAGTAATAAAGTTGATGTCTCCTGATAAATTATTATTACTAATGACTAGCCTTTGCAGGTTATAGAGGTGGCCAAAATGTAGATTGGAAATGGTGCCTTTGAAGTAGTTGTTTGATAACTCAATGGATCGAAGACTTGTGAGGTTATGTATGGAGATTGGTAATGGCCCCGAAAAATAGTTATAAGCAAGTTGTAGATATTGTAATTGAGGAAGTGTTAAGGCTATATGTGGCGGAATACTTCCTCGCAATTGGTTGTAAGCCAAGTACAATATCTGAAGAGAGGAGAGATTGAAGATGGACGGGGGAATTATACCTGACAGTTGATTCATAGACAAGTCTAATATTTGAAGCGAGGAGAGGTTAGAGATGGACGGGGGAATTATACCTGAGAGTTGATTTGTTGAGAGCTCCAAACTAGTTAAGTTGGTCAACTTAGGAATGTTGTCCGGAATAGGACCTGTAAATGCATTTGTGTGGCCCTTAATACGTACCAAAGATGTAAGATTCAGTATCAGTTTAAAGATAGGCCCAGAGAGTTTATTTTTGTGAAGCCAAAGCCATTTGAGGTTGGACAACGCTCCTAATTCCATCGGAAGTTCACCTTCTAGATTGTTGATAGCAAGAGAAAGATTTTGTAAGTTGATGCAACTTGATAAACTGGCTGGAATTCCTCCACTGAGGGTGTTGTTAGGAAGATATAGTGATTGTAGCCTCAAAAGACGGCCGATTTCAGGGGGAATTGAGCCATGTAGGCTATTACTGTCAAGCCAAATGATATTTAGAAAACTAAGGTTCCCTATGAAGGGTGATATGGTTCCTGACAAACCTCTACCAAACAGCTTTAGGCCAGTTACTCTTTTATGTTTGCGGCCGCAAATGACACCCTCCCATAAACAATGGTGAAGAGAGTGATTCCATGAGCTTAAAACTCCGTTGGGATGAAGATCGATTAATTGACTCTTGATTGCTAGCAATGCCATATAGTCTGTTTCGTTACTAATGGCATTAGCTACTCTAAGTGGATGTGGCTGCATTGCAATTACAACAACCAAGAGGATAACAGCTGCTTGTGTGTATAACAGAGGTTGTGGCTTCATTTTCTCTTCTTTTGTATTATTTGGTGATTTTTAGCTTCCTTTCTTACTCTATATATAGATATTTAAGCAATATAGTACTCCATTAAATTTGTCGTCAACTTCTTTCTGTTGTTTAACATCAAGAGTATACAAATAATGCAGTCGTCGTTTACTTTCGAATTTGAAAATGATATTCCATTTGTGTGGTTGTTTACTTGTATGGAAAAACATCTTAATGTGAAATACTCTTTCTGAGTTTGAAATAAGTTCTCATTTCTCTAACATACAAATTTTAGGAGAGAGTATATAGTACAATTTCATTGACTTTGGCGAGTAAAGGAGGTTAGGCTCTACAATTTCATTGACTTTGGTGAGTAAAGGACGTTAGGCTTTCTTTGTAACATAAAGAGATCGAAAAAGAGACGAAACTGATAAGTTAGTTGAAATTGAAAAGATAGTACTCCCTCCGTATTTTTTCAAGAGATACACTTGTCTTTTTCGGCCGTATTTATTTAAGAGATACACTTGCCATTTTTAGTAACTTATCAACCCCACCATCTAATTAAATAATACATCTAATATACCCTATCACCCACCATCCTATGAAACAAATATTTTCATAAACCCACCCCACCCTCCACCTACCAAAATGACATGGTCCCACATATTTAATTATTAAAATATCTATCCAACCCCACTTGCTTTATTATTTTATTTCATTCAATTATTCTTCTTAATACCCGTACCCGACCAAGTGTATCTCTTAAAAAAAATACGGAGGGAGTAGTTGAACTGATAAGGTGTTCACCTGACAATGAATTTGAAGGTTGTACGAAGTATGAAACAAGTAAAAATATACATGAATTAAACGCTTGTAGATTGATAGAATTTTGTTTCGTAATTTAATTCAATAAGTATACGTTATATTTAGATTTCTTTACGTCATCTGATTTTTTACCAGCTTTTTTTTTTTTTTTTGAGGGAGATTTTTACCAGTCAGTCATGATAGAAAAAGTACTATAACACGTTAGCATACTCAAAATTCTATTATTTCTCATATTAAAAAATAAAATAGTTTAAATGAAAAAGGCAAAAGAATTTGAAGTTACAAGTGTTGCGAACTTGCAACCATTTATTGAGATGAAATTAAGTGAGTTTGAATTATGATGCAGTGTCTTAGGAGTATTATTGAAGTCTAATATGGCGGCGTTGGCGAGCCTTGTTTTGGGCCCGGATACAGGAACAATGAAGGAGACGTTATTTAACTTTTCCGGATAAAGTTGACTACTGTACTTAATAAATACTTCCTCCGTCTTTTAATACTCGCAACGTTTGTTAGTTTTACGCATGCCAATGCA

mRNA sequence

ATGGATACTGCTGCTCCAAAGTTGCTACTTGTGTGTTCTTTTCATACTTGTGAAAACCATTTCATAATCTCTGTTTCTGAGTTTTCACTTTTCTCACTGGGTGAGTCATTCATAAATGGTGGGAAGTCGTTGGTGATGGAGCCCATTACGGAATGTTGGATGAGGATTCTCAAGTTTGGAAGCATCACCAATCTGGCCGATGTATCTTGTCCTAACTTGGACAAAGACCAGTAGACATTCAACCTCTTGCATAAACTTAAATTGTGGAACATGAACGATTTTACAAAAGGAAACTACAGCAGTTACTTCAATGCACGAAGTTGGTGGTTCTCCTTGACAATGGTGATCGAAATTAGTATAATCATCTATTCTTTAGACAGCCAAGATGCGTCCTTGACTCGCTATTTGGATTAAGGAAGGCCAATCCTTTCGTGTACCACTCAATCACTTTCTCCTGCAATCAGCTTTTTGCAGCTCACTTATTGCTTCACTTATCTTCATCCGATCACGTGGTAAATGACTTGAGCAAGCAACTCCAATCTTTATCACCGACACCATGCACTCCTCTGTTTTTCGAAGCATTTCATGGGGTTTTGGTCCCCTTTTGTCAGGTTATAGAGGTGGCCAAAATGTAGATTGGAAATGGTGCCTTTGAAGTAGTTGTTTGATAACTCAATGGATCGAAGACTTGTGAGGTTATGTATGGAGATTGGTAATGGCCCCGAAAAATAGTTATAAGCAAGTTGTAGATATTGTAATTGAGGAAGTGTTAAGGCTATATGTGGCGGAATACTTCCTCGCAATTGGTTGTAAGCCAAGTACAATATCTGAAGAGAGGAGAGATTGAAGATGGACGGGGGAATTATACCTGACAGTTGATTCATAGACAAGTCTAATATTTGAAGCGAGGAGAGGTTAGAGATGGACGGGGGAATTATACCTGAGAGTTGATTTGTTGAGAGCTCCAAACTAGTTAAGTTGGTCAACTTAGGAATGTTGTCCGGAATAGGACCTGTAAATGCATTTGTGTGGCCCTTAATACGTACCAAAGATGTAAGATTCAGTATCAGTTTAAAGATAGGCCCAGAGAGTTTATTTTTGTGAAGCCAAAGCCATTTGAGGTTGGACAACGCTCCTAATTCCATCGGAAGTTCACCTTCTAGATTGTTGATAGCAAGAGAAAGATTTTGTAAGTTGATGCAACTTGATAAACTGGCTGGAATTCCTCCACTGAGGGTGTTGTTAGGAAGATATAGTGATTGTAGCCTCAAAAGACGGCCGATTTCAGGGGGAATTGAGCCATGTAGGCTATTACTGTCAAGCCAAATGATATTTAGAAAACTAAGGTTCCCTATGAAGGGTGATATGGTTCCTGACAAACCTCTACCAAACAGCTTTAGGCCAGTTACTCTTTTATGTTTGCGGCCGCAAATGACACCCTCCCATAAACAATGGTGAAGAGAGTGATTCCATGAGCTTAAAACTCCGTTGGGATGAAGATCGATTAATTGACTCTTGATTGCTAGCAATGCCATATAGTCTGTTTCGTTACTAATGGCATTAGCTACTCTAAGTGGATGTGGCTGCATTGCAATTACAACAACCAAGAGGATAACAGCTGCTTGTGTGTATAACAGAGTGTCTTAGGAGTATTATTGAAGTCTAATATGGCGGCGTTGGCGAGCCTTGTTTTGGGCCCGGATACAGGAACAATGAAGGAGACGTTATTTAACTTTTCCGGATAAAGTTGACTACTGTACTTAATAAATACTTCCTCCGTCTTTTAATACTCGCAACGTTTGTTAGTTTTACGCATGCCAATGCA

Coding sequence (CDS)

ATGGATACTGCTGCTCCAAAGTTGCTACTTGTGTGTTCTTTTCATACTTGTGAAAACCATTTCATAATCTCTGTTTCTGAGTTTTCACTTTTCTCACTGGGTGAGTCATTCATAAATGGTGGGAAGTCGTTGGTGATGGAGCCCATTACGGAATGTTGGATGAGGATTCTCAAGTTTGGAAGCATCACCAATCTGGCCGATGTATCTTGTCCTAACTTGGACAAAGACCAGTAG

Protein sequence

MDTAAPKLLLVCSFHTCENHFIISVSEFSLFSLGESFINGGKSLVMEPITECWMRILKFGSITNLADVSCPNLDKDQ
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo25050.1Spo25050.1mRNA


Homology
[Close]
BLAST of Spo25050.1 vs. NCBI nr
Match: gi|902198047|gb|KNA13588.1| (hypothetical protein SOVF_115310 [Spinacia oleracea])

HSP 1 Score: 70.5 bits (171), Expect = 1.500e-9
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 1 

		  

Query: 1  MDTAAPKLLLVCSFHTCENHFIISVSEFSLFSL 34
          MDTAAPKLLLVCSFHTCENHFIISVSEFSLFSL
Sbjct: 1  MDTAAPKLLLVCSFHTCENHFIISVSEFSLFSL 33
[Close]
BLAST of Spo25050.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R253_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_115310 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.000e-9
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 1 

		  

Query: 1  MDTAAPKLLLVCSFHTCENHFIISVSEFSLFSL 34
          MDTAAPKLLLVCSFHTCENHFIISVSEFSLFSL
Sbjct: 1  MDTAAPKLLLVCSFHTCENHFIISVSEFSLFSL 33
The following BLAST results are available for this feature:
BLAST of Spo25050.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902198047|gb|KNA13588.1|1.5e-9100.hypothetical protein SOVF_1153... [more]
back to top
BLAST of Spo25050.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9R253_SPIOL1.0e-9100.Uncharacterized protein OS=Spi... [more]
back to top
BLAST of Spo25050.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo25050.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009616 virus induced gene silencing
biological_process GO:0080006 internode patterning
biological_process GO:0050896 response to stimulus
biological_process GO:0010016 shoot system morphogenesis
biological_process GO:0009887 animal organ morphogenesis
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0048645 animal organ formation
biological_process GO:0007267 cell-cell signaling
biological_process GO:0009855 determination of bilateral symmetry
biological_process GO:0006306 DNA methylation
biological_process GO:0048457 floral whorl morphogenesis
biological_process GO:0010154 fruit development
biological_process GO:0010076 maintenance of floral meristem identity
biological_process GO:0010051 xylem and phloem pattern formation
biological_process GO:0010077 maintenance of inflorescence meristem identity
biological_process GO:0010014 meristem initiation
biological_process GO:0006346 methylation-dependent chromatin silencing
biological_process GO:0048481 plant ovule development
biological_process GO:0009944 polarity specification of adaxial/abaxial axis
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0010267 production of ta-siRNAs involved in RNA interference
biological_process GO:0009909 regulation of flower development
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0010223 secondary shoot formation
biological_process GO:0006810 transport
biological_process GO:0050793 regulation of developmental process
biological_process GO:0035194 posttranscriptional gene silencing by RNA
biological_process GO:0009886 post-embryonic animal morphogenesis
biological_process GO:0009888 tissue development
biological_process GO:0031048 chromatin silencing by small RNA
biological_process GO:0010413 glucuronoxylan metabolic process
biological_process GO:0009630 gravitropism
biological_process GO:0050665 hydrogen peroxide biosynthetic process
biological_process GO:0045132 meiotic chromosome segregation
biological_process GO:0042138 meiotic DNA double-strand break formation
biological_process GO:0010638 positive regulation of organelle organization
biological_process GO:0016926 protein desumoylation
biological_process GO:0007131 reciprocal meiotic recombination
biological_process GO:0010359 regulation of anion channel activity
biological_process GO:0033044 regulation of chromosome organization
biological_process GO:0007062 sister chromatid cohesion
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0007389 pattern specification process
biological_process GO:0045492 xylan biosynthetic process
biological_process GO:0006468 protein phosphorylation
biological_process GO:0048438 floral whorl development
biological_process GO:0048507 meristem development
biological_process GO:0045892 negative regulation of transcription, DNA-templated
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005829 cytosol
cellular_component GO:0016020 membrane
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005634 nucleus
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0005515 protein binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0022857 transmembrane transporter activity
molecular_function GO:0005215 transporter activity
RNA-Seq Expression