Spo25065 (gene)

Overview
NameSpo25065
Typegene
OrganismSpinacia oleracea (Spinach)
Description(RNA polymerase II transcriptional coactivator) (RNA polymerase II transcriptional coactivator KIWI)
LocationSpoScf_00995 : 144328 .. 148004 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCAATTCGAAAAGTTTTTACTTCAAATTTAAAACTGTCCAACTCTCACCGCTCACACTTGACACTTCCACTTTCTCTCTCTTCACTCCATTTTCCGTCGCTTGCAAAACCGCTTCACTCTCTCTCCACCGGCACTTCCACCAAGAGTTAAAATGTCGGGAAAATTCAAGCGAAAGGAAAACGACGGTTACGCCTCAGACGGTGGTTCTGACGGCAACGCTCCTCCTAAGAAGTCTGTTAAGCGCGAGGACGATGAAGATGGAATTGTCGTTTGCGAGGTACTTCCTCTCTCCTAATAGTGAGCATTTTCTGTAGCGAATTTTGTTTTTTAGGTTTAATTTTTTTTGACGTTTGACTGATTGTATGTATGAACCCTAGATTTCGAAGAATCGGAGGGTTTCTGTGAGGAGTTGGCAGGGGAGAGTTATGGTTGATATTCGTGAGTTCTACGTCAAGGACGGCAAGCAAATGCCCGGTCGCAAAGGTTCCTCTCGAATTTCTGCTTGCTTGTTGTTGAACAATTTTCAGTAATTTTGTCGATTTTAAGTGTATTGTGAGTGTGAAATGTTAATTGATATTTTTTTCTAGGGTTTAGCTTTGGTTGTTTTGTGAAATTACAAAGAGAGACCAGTAAAATGATAGAAGGTGTTGAGATGATTTTTATTTATGCTGAGAAAAGAATGTGGTGGTTTTGAAGTATTGTTGTTGCAATTCAATTTTTAGATGTTTGTCATGATTTTTGTCGCGAGCTGTTAAATAATAATGATTTGCTGTTATTGAAATTCAGGTTTTACCTAGTTAGGTTTTGTGTTTTTGTTGATTTTTTTCATGTGCTGGTAATTATACTCCCTCTGGCCCTCCCTCACCCCAGGATATGAAGGTAATTTTTATAGAGCTCTGGAATTCATGAACGGTAATTTAGGGATGTGTGGACTTATAGTAGGTGCTTTAGATATTTCCTTGGCTAATAGGGGATTTTTCTGGGGGGTTCTGGGGCTGGAATTGGCGAATTTATAGCATAAGAAAGACTTAGATTCTTTGAGACACCTCTACCTTAAACAAAGAGAAAGGATAAAGTTCCACAAGGGACTATTTCATATTTTCTGGTCTATGATAAAGTTATTGAACATTAGGTCAACAAGATAATTTGGATTTTCATGGTATCTGGATGTTAAAGTGTGTAGATTCTTACTTCTCATGTATGAGAATATGAGATGGTAGGTGAAGCCGAATGTCGTGTAAAAGGGTCTACCACAAATTACAGGAATTTGATTTTAATCTACTATTGTAGTAAACTAGTAGTCTGTTGTGTTGTGCATTAGGGTTGGGAGAGTGGTTTGTGGACTACTTCAAGTTTCTACCCATAACATGTGTAAAAGAGCAAGCAGATGAAAGGGATGAAGACAAAGTTGCAAGCTATTAATGATTGTCGTATTATTTGCTTATTTGATTGGCGGAATAGTTGCAAACCTCTGCCTCTTCTTGTTGGCATGTAATAGTAATGGAATGTGTAGCGGAATTTTTTTGTCAGATTTTTCGATATTTGAATTATGGTCAGTGGTAAGCGTTCAAGTATTGTTGATGCAATTTGGTCCCCCATGTCATTCTTGGTTGATTTTTGAAACATTAGCCAATTTACTATCAGCCTTCCACCCCTAAAAAGCTTTTTTTTTTCCTTTTTTCCTGAAGATAGTTGGTATTGGACTTGTGTTCCCTCTCTTTCCTTTCGGGAGAATTGTTCTAATAGAAGAGGTTATTTCACCGTTGTTTGGAAACATTTGGATTAATTGATGATCGAGATTTACTTGTTTGTATTGTTCCAATAGGACATGGTAACACTGTTAATGTGGGAGTGATGTCCAACTTAATTTGAACTGTTTTGTTGTCGCTTGAGGTAAAGGCTGGCTAGGGAGGAATACTGGCTCATGTACTAGGTTCCACCCATGTCATATGTATATTTAATTGAAGGGTTGGGGAGAAGAAAGAAGGTTGCTAGTTTGTAATGATGTTACTTGTTGTATACTTGTATGAACGCATTACAAGAAACTTGTTCTGGACTCTTAACTGAAGTATCATAATCCCTTTTTTTTAAAAAAGAATTTATGCGCATGTCTAACTTTGCACCTACTTAGCAAAGAAGTTTAGGAATATGAAAGATACAAGGCTTGGCTGTGTGGGTGTGTGATCCAGTTCTTGCATTTGGAATTACTGCTGTGATGTCATGCTGATCCAGACTTCTGTTGCAAAAAATCTAGCAAAACAAAAATTACAAAATCATTTATTCAGTTTCAGATTGCTTCTTGTTTATAATCCTTAGCACAGCCAATTAGTGAATTTACTACTTCCATTTGGATTTAGTGGTCACATTCTGCTTACTAGGTTATTCAAATAACTCGTAATGTGACAATTATTTCAGAACGGTGGGACTGTTGGAGTAGTTTTTTTACTTTGTTCAGACCACCATATCACATGAAAATCACATAGTATCTATAATCTGATTATCTGCATGAAAAGCAACAATATGGTTTTACGCAATCTGTTCTGCTGCATACATTTGGTATGTTCACTCGTTTCCAATGAAATACAGTAGAATGTTTATGAGTGCACAAAGGAAGGGGGGAAATGGAGAAGTGCTCTGTATTTCCAGTGGAATAGGATATTTACGTACACCTCTTTGCCTGAAATGGTTGGTGTTGTTTCATTTACTTTGTTTTAGAACCCCCCACCCATCCAGTGCTTATCGTGCTTTGTGCAGAGTTTCTGTCGTGTTTTTTAAGGTTGATGTTTTCAGCTTAACTAAAGTTACAAATTTTCTTTTACTGATTTGTTGTCATTGTTCCTTTCAGGTATCACACTTACCATGGATCAGGTACATATCTTACATTCTTACGAATAGCTAATTGGCTACGATTAGTGTCACTATAATTCTTAATCAGTTTATGTCGTGTTCTGTTGGTTGATGACCATCTATTTTAGGTATTAACCCTTATTTTTCCGTTGGCTGCTGCAGTGGAAGGTGCTTCGTGATCATGCTGAGGATATTGACCAGGCTGTTACTGACAATTCTTAGGCTGGAGGTCTGATCCTTGTTGATATAGTTGATGGATGCTGGGTTTCAGGCTGTTACATTTTGCTGACTAGGACTTCTGCAGTAGTTATTAGTGGTAATTTCGGCTAATGTTCTGTATCTAAGTAGGATTATTGGATTGTGTAATCATGACTGCAGGTTTTCCACCTGTTTATGGATGCCTACAGACTCTATTTTGCTGAAATGGTAGTATGTACGCTTATTGACAGTACATTCAAAAACAGCTGTTTTACTATTGCAGAGTCGTGTAACAACAAAGTCGTCGTACAACTTGAAACATACATTGAAATCAAATTAGAGCTTCTTATTTAGAATTTCGAAGGAAAGCTGTTGGCCAATACCCAGTTTGAATTGACGAGTCTCCAGTACAGATTCGAAGACATTCATCACATGTTGTAAGTTATGATCATTACACAGATCTAACTGGAATGTGGATGATTTTGTGCTCAAATTTGAGAATTTTTGGCACAGTAATGTAGAGCACACCATTCTTAAACACAGCCATTATTTCTTCCTTCCATGAATTGAAAGGCAGGTGAAGGGTTGTCTCACGTGGACTAAATACCTTGTTTCCAAAAGCATCAATCCC

mRNA sequence

GGCAATTCGAAAAGTTTTTACTTCAAATTTAAAACTGTCCAACTCTCACCGCTCACACTTGACACTTCCACTTTCTCTCTCTTCACTCCATTTTCCGTCGCTTGCAAAACCGCTTCACTCTCTCTCCACCGGCACTTCCACCAAGAGTTAAAATGTCGGGAAAATTCAAGCGAAAGGAAAACGACGGTTACGCCTCAGACGGTGGTTCTGACGGCAACGCTCCTCCTAAGAAGTCTGTTAAGCGCGAGGACGATGAAGATGGAATTGTCGTTTGCGAGATTTCGAAGAATCGGAGGGTTTCTGTGAGGAGTTGGCAGGGGAGAGTTATGGTTGATATTCGTGAGTTCTACGTCAAGGACGGCAAGCAAATGCCCGGTCGCAAAGGTATCACACTTACCATGGATCAGTGGAAGGTGCTTCGTGATCATGCTGAGGATATTGACCAGGCTGTTACTGACAATTCTTAGGCTGGAGGTCTGATCCTTGTTGATATAGTTGATGGATGCTGGGTTTCAGGCTGTTACATTTTGCTGACTAGGACTTCTGCAGTAGTTATTAGTGGTAATTTCGGCTAATGTTCTGTATCTAAGTAGGATTATTGGATTGTGTAATCATGACTGCAGGTTTTCCACCTGTTTATGGATGCCTACAGACTCTATTTTGCTGAAATGGTAGTATGTACGCTTATTGACAGTACATTCAAAAACAGCTGTTTTACTATTGCAGAGTCGTGTAACAACAAAGTCGTCGTACAACTTGAAACATACATTGAAATCAAATTAGAGCTTCTTATTTAGAATTTCGAAGGAAAGCTGTTGGCCAATACCCAGTTTGAATTGACGAGTCTCCAGTACAGATTCGAAGACATTCATCACATGTTGTAAGTTATGATCATTACACAGATCTAACTGGAATGTGGATGATTTTGTGCTCAAATTTGAGAATTTTTGGCACAGTAATGTAGAGCACACCATTCTTAAACACAGCCATTATTTCTTCCTTCCATGAATTGAAAGGCAGGTGAAGGGTTGTCTCACGTGGACTAAATACCTTGTTTCCAAAAGCATCAATCCC

Coding sequence (CDS)

ATGTCGGGAAAATTCAAGCGAAAGGAAAACGACGGTTACGCCTCAGACGGTGGTTCTGACGGCAACGCTCCTCCTAAGAAGTCTGTTAAGCGCGAGGACGATGAAGATGGAATTGTCGTTTGCGAGATTTCGAAGAATCGGAGGGTTTCTGTGAGGAGTTGGCAGGGGAGAGTTATGGTTGATATTCGTGAGTTCTACGTCAAGGACGGCAAGCAAATGCCCGGTCGCAAAGGTATCACACTTACCATGGATCAGTGGAAGGTGCTTCGTGATCATGCTGAGGATATTGACCAGGCTGTTACTGACAATTCTTAG

Protein sequence

MSGKFKRKENDGYASDGGSDGNAPPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRVMVDIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDNS
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo25065.1Spo25065.1mRNA


Homology
[Close]
BLAST of Spo25065.1 vs. NCBI nr
Match: gi|902181989|gb|KNA09844.1| (hypothetical protein SOVF_149820 [Spinacia oleracea])

HSP 1 Score: 212.6 bits (540), Expect = 3.200e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 

		  

Query: 1   MSGKFKRKENDGYASDGGSDGNAPPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRVMV 60
           MSGKFKRKENDGYASDGGSDGNAPPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRVMV
Sbjct: 1   MSGKFKRKENDGYASDGGSDGNAPPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRVMV 60

Query: 61  DIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDNS 105
           DIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDNS
Sbjct: 61  DIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDNS 104
[Close]
BLAST of Spo25065.1 vs. NCBI nr
Match: gi|731327233|ref|XP_010674417.1| (PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 156.4 bits (394), Expect = 2.800e-35
Identity = 77/103 (74.76%), Postives = 91/103 (88.35%), Query Frame = 1 

		  

Query: 1   MSGKFKRKENDGYASDGGSDGNAPPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRVMV 60
           MS K KRK++   ASD  SDGNAPPKKS K  +DEDGI+VCE+SK+RRV+VRSWQG+V+V
Sbjct: 43  MSAKSKRKDD---ASDADSDGNAPPKKSAKH-NDEDGILVCELSKSRRVTVRSWQGKVVV 102

Query: 61  DIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDN 104
           DIREFY KDGK++PGRKGI+LTMDQWK+LRDHAEDIDQAV +N
Sbjct: 103 DIREFYTKDGKELPGRKGISLTMDQWKILRDHAEDIDQAVAEN 141
[Close]
BLAST of Spo25065.1 vs. NCBI nr
Match: gi|870862858|gb|KMT14046.1| (hypothetical protein BVRB_4g078750 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 156.4 bits (394), Expect = 2.800e-35
Identity = 77/103 (74.76%), Postives = 91/103 (88.35%), Query Frame = 1 

		  

Query: 1   MSGKFKRKENDGYASDGGSDGNAPPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRVMV 60
           MS K KRK++   ASD  SDGNAPPKKS K  +DEDGI+VCE+SK+RRV+VRSWQG+V+V
Sbjct: 1   MSAKSKRKDD---ASDADSDGNAPPKKSAKH-NDEDGILVCELSKSRRVTVRSWQGKVVV 60

Query: 61  DIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDN 104
           DIREFY KDGK++PGRKGI+LTMDQWK+LRDHAEDIDQAV +N
Sbjct: 61  DIREFYTKDGKELPGRKGISLTMDQWKILRDHAEDIDQAVAEN 99
[Close]
BLAST of Spo25065.1 vs. NCBI nr
Match: gi|593328692|ref|XP_007137773.1| (hypothetical protein PHAVU_009G154400g [Phaseolus vulgaris])

HSP 1 Score: 153.7 bits (387), Expect = 1.800e-34
Identity = 75/106 (70.75%), Postives = 94/106 (88.68%), Query Frame = 1 

		  

Query: 1   MSGKFKRKENDGYASDGGSDGNAPPKKSVKREDDE--DGIVVCEISKNRRVSVRSWQGRV 60
           MSGK KR++ DG ASD  S+G+APPKK++KR+ D+  D IVVCEISKNRRVSVR+WQGR+
Sbjct: 1   MSGKAKRRDEDG-ASDADSEGHAPPKKTLKRDSDDESDSIVVCEISKNRRVSVRNWQGRI 60

Query: 61  MVDIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDNS 105
           +VDIREFY+KDGK+MPG+KGI+LTMDQW VLR H E+ID+AV++NS
Sbjct: 61  VVDIREFYLKDGKKMPGKKGISLTMDQWNVLRTHVEEIDKAVSENS 105
[Close]
BLAST of Spo25065.1 vs. NCBI nr
Match: gi|571457897|ref|XP_006580939.1| (PREDICTED: uncharacterized protein LOC100499936 isoform X1 [Glycine max])

HSP 1 Score: 152.9 bits (385), Expect = 3.100e-34
Identity = 74/106 (69.81%), Postives = 93/106 (87.74%), Query Frame = 1 

		  

Query: 1   MSGKFKRKENDGYASDGGSDGNAPPKKSVKRE--DDEDGIVVCEISKNRRVSVRSWQGRV 60
           MSGK KR+++DG ASD  S+G+APPKKS+K++  DD D I VCEISKNRRV+VR+W+G +
Sbjct: 1   MSGKAKRRDDDG-ASDADSEGHAPPKKSLKKDSDDDPDSITVCEISKNRRVAVRNWKGSI 60

Query: 61  MVDIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDNS 105
           MVDIREFYVKDGKQ+PGRKGI+LTMDQW VLR+H E+ID+A+ +NS
Sbjct: 61  MVDIREFYVKDGKQLPGRKGISLTMDQWNVLRNHVEEIDKAINENS 105
[Close]
BLAST of Spo25065.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QRB0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_149820 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 2.300e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 

		  

Query: 1   MSGKFKRKENDGYASDGGSDGNAPPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRVMV 60
           MSGKFKRKENDGYASDGGSDGNAPPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRVMV
Sbjct: 1   MSGKFKRKENDGYASDGGSDGNAPPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRVMV 60

Query: 61  DIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDNS 105
           DIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDNS
Sbjct: 61  DIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDNS 104
[Close]
BLAST of Spo25065.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FDZ3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g078750 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.900e-35
Identity = 77/103 (74.76%), Postives = 91/103 (88.35%), Query Frame = 1 

		  

Query: 1   MSGKFKRKENDGYASDGGSDGNAPPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRVMV 60
           MS K KRK++   ASD  SDGNAPPKKS K  +DEDGI+VCE+SK+RRV+VRSWQG+V+V
Sbjct: 1   MSAKSKRKDD---ASDADSDGNAPPKKSAKH-NDEDGILVCELSKSRRVTVRSWQGKVVV 60

Query: 61  DIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDN 104
           DIREFY KDGK++PGRKGI+LTMDQWK+LRDHAEDIDQAV +N
Sbjct: 61  DIREFYTKDGKELPGRKGISLTMDQWKILRDHAEDIDQAVAEN 99
[Close]
BLAST of Spo25065.1 vs. UniProtKB/TrEMBL
Match: V7AVU6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G154400g PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.200e-34
Identity = 75/106 (70.75%), Postives = 94/106 (88.68%), Query Frame = 1 

		  

Query: 1   MSGKFKRKENDGYASDGGSDGNAPPKKSVKREDDE--DGIVVCEISKNRRVSVRSWQGRV 60
           MSGK KR++ DG ASD  S+G+APPKK++KR+ D+  D IVVCEISKNRRVSVR+WQGR+
Sbjct: 1   MSGKAKRRDEDG-ASDADSEGHAPPKKTLKRDSDDESDSIVVCEISKNRRVSVRNWQGRI 60

Query: 61  MVDIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDNS 105
           +VDIREFY+KDGK+MPG+KGI+LTMDQW VLR H E+ID+AV++NS
Sbjct: 61  VVDIREFYLKDGKKMPGKKGISLTMDQWNVLRTHVEEIDKAVSENS 105
[Close]
BLAST of Spo25065.1 vs. UniProtKB/TrEMBL
Match: A0A0B2PPL3_GLYSO (RNA polymerase II transcriptional coactivator KIWI OS=Glycine soja GN=glysoja_011908 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.100e-34
Identity = 74/106 (69.81%), Postives = 93/106 (87.74%), Query Frame = 1 

		  

Query: 1   MSGKFKRKENDGYASDGGSDGNAPPKKSVKRE--DDEDGIVVCEISKNRRVSVRSWQGRV 60
           MSGK KR+++DG ASD  S+G+APPKKS+K++  DD D I VCEISKNRRV+VR+W+G +
Sbjct: 1   MSGKAKRRDDDG-ASDADSEGHAPPKKSLKKDSDDDPDSITVCEISKNRRVAVRNWKGSI 60

Query: 61  MVDIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDNS 105
           MVDIREFYVKDGKQ+PGRKGI+LTMDQW VLR+H E+ID+A+ +NS
Sbjct: 61  MVDIREFYVKDGKQLPGRKGISLTMDQWNVLRNHVEEIDKAINENS 105
[Close]
BLAST of Spo25065.1 vs. UniProtKB/TrEMBL
Match: I1KBM5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G155900 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.100e-34
Identity = 74/106 (69.81%), Postives = 93/106 (87.74%), Query Frame = 1 

		  

Query: 1   MSGKFKRKENDGYASDGGSDGNAPPKKSVKRE--DDEDGIVVCEISKNRRVSVRSWQGRV 60
           MSGK KR+++DG ASD  S+G+APPKKS+K++  DD D I VCEISKNRRV+VR+W+G +
Sbjct: 1   MSGKAKRRDDDG-ASDADSEGHAPPKKSLKKDSDDDPDSITVCEISKNRRVAVRNWKGSI 60

Query: 61  MVDIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDNS 105
           MVDIREFYVKDGKQ+PGRKGI+LTMDQW VLR+H E+ID+A+ +NS
Sbjct: 61  MVDIREFYVKDGKQLPGRKGISLTMDQWNVLRNHVEEIDKAINENS 105
[Close]
BLAST of Spo25065.1 vs. ExPASy Swiss-Prot
Match: KIWI_ARATH (RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana GN=KIWI PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 6.600e-29
Identity = 64/107 (59.81%), Postives = 82/107 (76.64%), Query Frame = 1 

		  

Query: 1   MSGKFKRKENDGYASDGGSDGNAPPKKSVKREDDED---GIVVCEISKNRRVSVRSWQGR 60
           MS + KRK+ D  ASD  S+ +AP KK  K  DD D    IVVC ISKNRRVSVR+W G+
Sbjct: 1   MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query: 61  VMVDIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDNS 105
           + +DIREFYVKDGK +PG+KGI+L++DQW  LR+HAEDI++A++D S
Sbjct: 61  IWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRNHAEDIEKALSDLS 107
[Close]
BLAST of Spo25065.1 vs. ExPASy Swiss-Prot
Match: KELP_ARATH (RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana GN=KELP PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.100e-12
Identity = 32/81 (39.51%), Postives = 53/81 (65.43%), Query Frame = 1 

		  

Query: 20  DGNAPPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRVMVDIREFYVKDGKQMPGRKGI 79
           DG+    K  K  DD+  +++C +S  RRV+++ ++G+ +V IRE+Y KDGK++P  KGI
Sbjct: 78  DGDKDCGKGNKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDGKELPTSKGI 137

Query: 80  TLTMDQWKVLRDHAEDIDQAV 101
           +LT +QW   + +   I+ AV
Sbjct: 138 SLTDEQWSTFKKNMPAIENAV 158
[Close]
BLAST of Spo25065.1 vs. ExPASy Swiss-Prot
Match: TCP4_MOUSE (Activated RNA polymerase II transcriptional coactivator p15 OS=Mus musculus GN=Sub1 PE=1 SV=3)

HSP 1 Score: 68.2 bits (165), Expect = 6.200e-11
Identity = 34/79 (43.04%), Postives = 52/79 (65.82%), Query Frame = 1 

		  

Query: 23  APPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRVMVDIREFYV-KDGKQMPGRKGITL 82
           A  K+S    DD     + +I K R VSVR ++G++++DIRE+++  +G+  PGRKGI+L
Sbjct: 50  ASSKQSSSSRDDN----MFQIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISL 109

Query: 83  TMDQWKVLRDHAEDIDQAV 101
            M+QW  L++   DID AV
Sbjct: 110 NMEQWSQLKEQISDIDDAV 124
[Close]
BLAST of Spo25065.1 vs. ExPASy Swiss-Prot
Match: TCP4_RAT (Activated RNA polymerase II transcriptional coactivator p15 OS=Rattus norvegicus GN=Sub1 PE=1 SV=3)

HSP 1 Score: 68.2 bits (165), Expect = 6.200e-11
Identity = 34/79 (43.04%), Postives = 52/79 (65.82%), Query Frame = 1 

		  

Query: 23  APPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRVMVDIREFYV-KDGKQMPGRKGITL 82
           A  K+S    DD     + +I K R VSVR ++G++++DIRE+++  +G+  PGRKGI+L
Sbjct: 50  ASSKQSSSSRDDN----MFQIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISL 109

Query: 83  TMDQWKVLRDHAEDIDQAV 101
            M+QW  L++   DID AV
Sbjct: 110 NMEQWSQLKEQISDIDDAV 124
[Close]
BLAST of Spo25065.1 vs. ExPASy Swiss-Prot
Match: TCP4_CHICK (Activated RNA polymerase II transcriptional coactivator p15 OS=Gallus gallus GN=SUB1 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.100e-10
Identity = 35/83 (42.17%), Postives = 56/83 (67.47%), Query Frame = 1 

		  

Query: 19  SDGNAPPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRVMVDIREFYV-KDGKQMPGRK 78
           S G A  K+S  R+++     + +I K R VSVR ++G+V++DIRE+++ ++G+  PGRK
Sbjct: 46  SKGAASSKQSSNRDEN-----MFQIGKMRYVSVRDFKGKVLIDIREYWMDQEGEMKPGRK 105

Query: 79  GITLTMDQWKVLRDHAEDIDQAV 101
           GI+L  +QW  L++   DID AV
Sbjct: 106 GISLNPEQWNQLKEQISDIDDAV 123
[Close]
BLAST of Spo25065.1 vs. TAIR (Arabidopsis)
Match: AT5G09250.1 (ssDNA-binding transcriptional regulator)

HSP 1 Score: 127.9 bits (320), Expect = 3.700e-30
Identity = 64/107 (59.81%), Postives = 82/107 (76.64%), Query Frame = 1 

		  

Query: 1   MSGKFKRKENDGYASDGGSDGNAPPKKSVKREDDED---GIVVCEISKNRRVSVRSWQGR 60
           MS + KRK+ D  ASD  S+ +AP KK  K  DD D    IVVC ISKNRRVSVR+W G+
Sbjct: 1   MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query: 61  VMVDIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDNS 105
           + +DIREFYVKDGK +PG+KGI+L++DQW  LR+HAEDI++A++D S
Sbjct: 61  IWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRNHAEDIEKALSDLS 107
[Close]
BLAST of Spo25065.1 vs. TAIR (Arabidopsis)
Match: AT5G09240.2 (ssDNA-binding transcriptional regulator)

HSP 1 Score: 77.8 bits (190), Expect = 4.400e-15
Identity = 50/136 (36.76%), Postives = 74/136 (54.41%), Query Frame = 1 

		  

Query: 1   MSGKFKRKENDGYASDGG--SDGNAPPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRV 60
           MS   KRK+ D  ASD    S+ +APPKK  K  D+ + I +C + KNRRV VR+  GR+
Sbjct: 1   MSENGKRKDEDVRASDDRDESETHAPPKKVAKPADEIEDIFICNLDKNRRVFVRNCNGRI 60

Query: 61  MVDIREFYVKDGKQMP--GRKGITLTMD----------------------------QWKV 105
            + IR+F+VKDG  +P   ++GI+L+++                            QW  
Sbjct: 61  WIAIRQFFVKDGITLPCNSKQGISLSLEQVFTSLFHCLCLPHVHMSCLLHETFFLMQWND 120
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BLAST of Spo25065.1 vs. TAIR (Arabidopsis)
Match: AT4G10920.1 (transcriptional coactivator p15 (PC4) family protein (KELP))

HSP 1 Score: 73.9 bits (180), Expect = 6.400e-14
Identity = 32/81 (39.51%), Postives = 53/81 (65.43%), Query Frame = 1 

		  

Query: 20  DGNAPPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRVMVDIREFYVKDGKQMPGRKGI 79
           DG+    K  K  DD+  +++C +S  RRV+++ ++G+ +V IRE+Y KDGK++P  KGI
Sbjct: 78  DGDKDCGKGNKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDGKELPTSKGI 137

Query: 80  TLTMDQWKVLRDHAEDIDQAV 101
           +LT +QW   + +   I+ AV
Sbjct: 138 SLTDEQWSTFKKNMPAIENAV 158
The following BLAST results are available for this feature:
BLAST of Spo25065.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902181989|gb|KNA09844.1|3.2e-52100.hypothetical protein SOVF_1498... [more]
gi|731327233|ref|XP_010674417.1|2.8e-3574.7PREDICTED: RNA polymerase II t... [more]
gi|870862858|gb|KMT14046.1|2.8e-3574.7hypothetical protein BVRB_4g07... [more]
gi|593328692|ref|XP_007137773.1|1.8e-3470.7hypothetical protein PHAVU_009... [more]
gi|571457897|ref|XP_006580939.1|3.1e-3469.8PREDICTED: uncharacterized pro... [more]
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BLAST of Spo25065.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QRB0_SPIOL2.3e-52100.Uncharacterized protein OS=Spi... [more]
A0A0J8FDZ3_BETVU1.9e-3574.7Uncharacterized protein OS=Bet... [more]
V7AVU6_PHAVU1.2e-3470.7Uncharacterized protein OS=Pha... [more]
A0A0B2PPL3_GLYSO2.1e-3469.8RNA polymerase II transcriptio... [more]
I1KBM5_SOYBN2.1e-3469.8Uncharacterized protein OS=Gly... [more]
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BLAST of Spo25065.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
KIWI_ARATH6.6e-2959.8RNA polymerase II transcriptio... [more]
KELP_ARATH1.1e-1239.5RNA polymerase II transcriptio... [more]
TCP4_MOUSE6.2e-1143.0Activated RNA polymerase II tr... [more]
TCP4_RAT6.2e-1143.0Activated RNA polymerase II tr... [more]
TCP4_CHICK1.1e-1042.1Activated RNA polymerase II tr... [more]
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BLAST of Spo25065.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT5G09250.13.7e-3059.8ssDNA-binding transcriptional ... [more]
AT5G09240.24.4e-1536.7ssDNA-binding transcriptional ... [more]
AT4G10920.16.4e-1439.5transcriptional coactivator p1... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003173Transcriptional coactivator p15 (PC4)PFAMPF02229PC4coord: 41..91
score: 2.5
IPR009044ssDNA-binding transcriptional regulatorGENE3D2.30.31.10coord: 40..101
score: 7.8
IPR009044ssDNA-binding transcriptional regulatorunknownSSF54447ssDNA-binding transcriptional regulator domaincoord: 40..101
score: 2.43
NoneNo IPR availablePANTHERPTHR13215RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATORcoord: 6..104
score: 2.3

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0008283 cell proliferation
biological_process GO:0009987 cellular process
biological_process GO:0006886 intracellular protein transport
biological_process GO:0001510 RNA methylation
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006334 nucleosome assembly
biological_process GO:0042545 cell wall modification
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0044425 membrane part
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005744 mitochondrial inner membrane presequence translocase complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0016020 membrane
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005730 nucleolus
cellular_component GO:0009507 chloroplast
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005618 cell wall
cellular_component GO:0005840 ribosome
cellular_component GO:0009536 plastid
cellular_component GO:0005634 nucleus
cellular_component GO:0000786 nucleosome
molecular_function GO:0003713 transcription coactivator activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding
RNA-Seq Expression