Spo25065 (gene) | SpinachBase

Overview


Name	Spo25065
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	(RNA polymerase II transcriptional coactivator) (RNA polymerase II transcriptional coactivator KIWI)
Location	SpoScf_00995 : 144328 .. 148004 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCAATTCGAAAAGTTTTTACTTCAAATTTAAAACTGTCCAACTCTCACCGCTCACACTTGACACTTCCACTTTCTCTCTCTTCACTCCATTTTCCGTCGCTTGCAAAACCGCTTCACTCTCTCTCCACCGGCACTTCCACCAAGAGTTAAAATGTCGGGAAAATTCAAGCGAAAGGAAAACGACGGTTACGCCTCAGACGGTGGTTCTGACGGCAACGCTCCTCCTAAGAAGTCTGTTAAGCGCGAGGACGATGAAGATGGAATTGTCGTTTGCGAGGTACTTCCTCTCTCCTAATAGTGAGCATTTTCTGTAGCGAATTTTGTTTTTTAGGTTTAATTTTTTTTGACGTTTGACTGATTGTATGTATGAACCCTAGATTTCGAAGAATCGGAGGGTTTCTGTGAGGAGTTGGCAGGGGAGAGTTATGGTTGATATTCGTGAGTTCTACGTCAAGGACGGCAAGCAAATGCCCGGTCGCAAAGGTTCCTCTCGAATTTCTGCTTGCTTGTTGTTGAACAATTTTCAGTAATTTTGTCGATTTTAAGTGTATTGTGAGTGTGAAATGTTAATTGATATTTTTTTCTAGGGTTTAGCTTTGGTTGTTTTGTGAAATTACAAAGAGAGACCAGTAAAATGATAGAAGGTGTTGAGATGATTTTTATTTATGCTGAGAAAAGAATGTGGTGGTTTTGAAGTATTGTTGTTGCAATTCAATTTTTAGATGTTTGTCATGATTTTTGTCGCGAGCTGTTAAATAATAATGATTTGCTGTTATTGAAATTCAGGTTTTACCTAGTTAGGTTTTGTGTTTTTGTTGATTTTTTTCATGTGCTGGTAATTATACTCCCTCTGGCCCTCCCTCACCCCAGGATATGAAGGTAATTTTTATAGAGCTCTGGAATTCATGAACGGTAATTTAGGGATGTGTGGACTTATAGTAGGTGCTTTAGATATTTCCTTGGCTAATAGGGGATTTTTCTGGGGGGTTCTGGGGCTGGAATTGGCGAATTTATAGCATAAGAAAGACTTAGATTCTTTGAGACACCTCTACCTTAAACAAAGAGAAAGGATAAAGTTCCACAAGGGACTATTTCATATTTTCTGGTCTATGATAAAGTTATTGAACATTAGGTCAACAAGATAATTTGGATTTTCATGGTATCTGGATGTTAAAGTGTGTAGATTCTTACTTCTCATGTATGAGAATATGAGATGGTAGGTGAAGCCGAATGTCGTGTAAAAGGGTCTACCACAAATTACAGGAATTTGATTTTAATCTACTATTGTAGTAAACTAGTAGTCTGTTGTGTTGTGCATTAGGGTTGGGAGAGTGGTTTGTGGACTACTTCAAGTTTCTACCCATAACATGTGTAAAAGAGCAAGCAGATGAAAGGGATGAAGACAAAGTTGCAAGCTATTAATGATTGTCGTATTATTTGCTTATTTGATTGGCGGAATAGTTGCAAACCTCTGCCTCTTCTTGTTGGCATGTAATAGTAATGGAATGTGTAGCGGAATTTTTTTGTCAGATTTTTCGATATTTGAATTATGGTCAGTGGTAAGCGTTCAAGTATTGTTGATGCAATTTGGTCCCCCATGTCATTCTTGGTTGATTTTTGAAACATTAGCCAATTTACTATCAGCCTTCCACCCCTAAAAAGCTTTTTTTTTTCCTTTTTTCCTGAAGATAGTTGGTATTGGACTTGTGTTCCCTCTCTTTCCTTTCGGGAGAATTGTTCTAATAGAAGAGGTTATTTCACCGTTGTTTGGAAACATTTGGATTAATTGATGATCGAGATTTACTTGTTTGTATTGTTCCAATAGGACATGGTAACACTGTTAATGTGGGAGTGATGTCCAACTTAATTTGAACTGTTTTGTTGTCGCTTGAGGTAAAGGCTGGCTAGGGAGGAATACTGGCTCATGTACTAGGTTCCACCCATGTCATATGTATATTTAATTGAAGGGTTGGGGAGAAGAAAGAAGGTTGCTAGTTTGTAATGATGTTACTTGTTGTATACTTGTATGAACGCATTACAAGAAACTTGTTCTGGACTCTTAACTGAAGTATCATAATCCCTTTTTTTTAAAAAAGAATTTATGCGCATGTCTAACTTTGCACCTACTTAGCAAAGAAGTTTAGGAATATGAAAGATACAAGGCTTGGCTGTGTGGGTGTGTGATCCAGTTCTTGCATTTGGAATTACTGCTGTGATGTCATGCTGATCCAGACTTCTGTTGCAAAAAATCTAGCAAAACAAAAATTACAAAATCATTTATTCAGTTTCAGATTGCTTCTTGTTTATAATCCTTAGCACAGCCAATTAGTGAATTTACTACTTCCATTTGGATTTAGTGGTCACATTCTGCTTACTAGGTTATTCAAATAACTCGTAATGTGACAATTATTTCAGAACGGTGGGACTGTTGGAGTAGTTTTTTTACTTTGTTCAGACCACCATATCACATGAAAATCACATAGTATCTATAATCTGATTATCTGCATGAAAAGCAACAATATGGTTTTACGCAATCTGTTCTGCTGCATACATTTGGTATGTTCACTCGTTTCCAATGAAATACAGTAGAATGTTTATGAGTGCACAAAGGAAGGGGGGAAATGGAGAAGTGCTCTGTATTTCCAGTGGAATAGGATATTTACGTACACCTCTTTGCCTGAAATGGTTGGTGTTGTTTCATTTACTTTGTTTTAGAACCCCCCACCCATCCAGTGCTTATCGTGCTTTGTGCAGAGTTTCTGTCGTGTTTTTTAAGGTTGATGTTTTCAGCTTAACTAAAGTTACAAATTTTCTTTTACTGATTTGTTGTCATTGTTCCTTTCAGGTATCACACTTACCATGGATCAGGTACATATCTTACATTCTTACGAATAGCTAATTGGCTACGATTAGTGTCACTATAATTCTTAATCAGTTTATGTCGTGTTCTGTTGGTTGATGACCATCTATTTTAGGTATTAACCCTTATTTTTCCGTTGGCTGCTGCAGTGGAAGGTGCTTCGTGATCATGCTGAGGATATTGACCAGGCTGTTACTGACAATTCTTAGGCTGGAGGTCTGATCCTTGTTGATATAGTTGATGGATGCTGGGTTTCAGGCTGTTACATTTTGCTGACTAGGACTTCTGCAGTAGTTATTAGTGGTAATTTCGGCTAATGTTCTGTATCTAAGTAGGATTATTGGATTGTGTAATCATGACTGCAGGTTTTCCACCTGTTTATGGATGCCTACAGACTCTATTTTGCTGAAATGGTAGTATGTACGCTTATTGACAGTACATTCAAAAACAGCTGTTTTACTATTGCAGAGTCGTGTAACAACAAAGTCGTCGTACAACTTGAAACATACATTGAAATCAAATTAGAGCTTCTTATTTAGAATTTCGAAGGAAAGCTGTTGGCCAATACCCAGTTTGAATTGACGAGTCTCCAGTACAGATTCGAAGACATTCATCACATGTTGTAAGTTATGATCATTACACAGATCTAACTGGAATGTGGATGATTTTGTGCTCAAATTTGAGAATTTTTGGCACAGTAATGTAGAGCACACCATTCTTAAACACAGCCATTATTTCTTCCTTCCATGAATTGAAAGGCAGGTGAAGGGTTGTCTCACGTGGACTAAATACCTTGTTTCCAAAAGCATCAATCCC

mRNA sequence

GGCAATTCGAAAAGTTTTTACTTCAAATTTAAAACTGTCCAACTCTCACCGCTCACACTTGACACTTCCACTTTCTCTCTCTTCACTCCATTTTCCGTCGCTTGCAAAACCGCTTCACTCTCTCTCCACCGGCACTTCCACCAAGAGTTAAAATGTCGGGAAAATTCAAGCGAAAGGAAAACGACGGTTACGCCTCAGACGGTGGTTCTGACGGCAACGCTCCTCCTAAGAAGTCTGTTAAGCGCGAGGACGATGAAGATGGAATTGTCGTTTGCGAGATTTCGAAGAATCGGAGGGTTTCTGTGAGGAGTTGGCAGGGGAGAGTTATGGTTGATATTCGTGAGTTCTACGTCAAGGACGGCAAGCAAATGCCCGGTCGCAAAGGTATCACACTTACCATGGATCAGTGGAAGGTGCTTCGTGATCATGCTGAGGATATTGACCAGGCTGTTACTGACAATTCTTAGGCTGGAGGTCTGATCCTTGTTGATATAGTTGATGGATGCTGGGTTTCAGGCTGTTACATTTTGCTGACTAGGACTTCTGCAGTAGTTATTAGTGGTAATTTCGGCTAATGTTCTGTATCTAAGTAGGATTATTGGATTGTGTAATCATGACTGCAGGTTTTCCACCTGTTTATGGATGCCTACAGACTCTATTTTGCTGAAATGGTAGTATGTACGCTTATTGACAGTACATTCAAAAACAGCTGTTTTACTATTGCAGAGTCGTGTAACAACAAAGTCGTCGTACAACTTGAAACATACATTGAAATCAAATTAGAGCTTCTTATTTAGAATTTCGAAGGAAAGCTGTTGGCCAATACCCAGTTTGAATTGACGAGTCTCCAGTACAGATTCGAAGACATTCATCACATGTTGTAAGTTATGATCATTACACAGATCTAACTGGAATGTGGATGATTTTGTGCTCAAATTTGAGAATTTTTGGCACAGTAATGTAGAGCACACCATTCTTAAACACAGCCATTATTTCTTCCTTCCATGAATTGAAAGGCAGGTGAAGGGTTGTCTCACGTGGACTAAATACCTTGTTTCCAAAAGCATCAATCCC

Coding sequence (CDS)

ATGTCGGGAAAATTCAAGCGAAAGGAAAACGACGGTTACGCCTCAGACGGTGGTTCTGACGGCAACGCTCCTCCTAAGAAGTCTGTTAAGCGCGAGGACGATGAAGATGGAATTGTCGTTTGCGAGATTTCGAAGAATCGGAGGGTTTCTGTGAGGAGTTGGCAGGGGAGAGTTATGGTTGATATTCGTGAGTTCTACGTCAAGGACGGCAAGCAAATGCCCGGTCGCAAAGGTATCACACTTACCATGGATCAGTGGAAGGTGCTTCGTGATCATGCTGAGGATATTGACCAGGCTGTTACTGACAATTCTTAG

Protein sequence

MSGKFKRKENDGYASDGGSDGNAPPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRVMVDIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDNS

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo25065.1	Spo25065.1	mRNA

Homology

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BLAST of Spo25065.1 vs. NCBI nr
Match: gi|902181989|gb|KNA09844.1| (hypothetical protein SOVF_149820 [Spinacia oleracea])

HSP 1 Score: 212.6 bits (540), Expect = 3.200e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1

		  
Query: 1   MSGKFKRKENDGYASDGGSDGNAPPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRVMV 60
           MSGKFKRKENDGYASDGGSDGNAPPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRVMV
Sbjct: 1   MSGKFKRKENDGYASDGGSDGNAPPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRVMV 60

Query: 61  DIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDNS 105
           DIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDNS
Sbjct: 61  DIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDNS 104

[Close]

BLAST of Spo25065.1 vs. NCBI nr
Match: gi|731327233|ref|XP_010674417.1| (PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 156.4 bits (394), Expect = 2.800e-35
Identity = 77/103 (74.76%), Postives = 91/103 (88.35%), Query Frame = 1

		  
Query: 1   MSGKFKRKENDGYASDGGSDGNAPPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRVMV 60
           MS K KRK++   ASD  SDGNAPPKKS K  +DEDGI+VCE+SK+RRV+VRSWQG+V+V
Sbjct: 43  MSAKSKRKDD---ASDADSDGNAPPKKSAKH-NDEDGILVCELSKSRRVTVRSWQGKVVV 102

Query: 61  DIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDN 104
           DIREFY KDGK++PGRKGI+LTMDQWK+LRDHAEDIDQAV +N
Sbjct: 103 DIREFYTKDGKELPGRKGISLTMDQWKILRDHAEDIDQAVAEN 141

[Close]

BLAST of Spo25065.1 vs. NCBI nr
Match: gi|870862858|gb|KMT14046.1| (hypothetical protein BVRB_4g078750 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 156.4 bits (394), Expect = 2.800e-35
Identity = 77/103 (74.76%), Postives = 91/103 (88.35%), Query Frame = 1

		  
Query: 1   MSGKFKRKENDGYASDGGSDGNAPPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRVMV 60
           MS K KRK++   ASD  SDGNAPPKKS K  +DEDGI+VCE+SK+RRV+VRSWQG+V+V
Sbjct: 1   MSAKSKRKDD---ASDADSDGNAPPKKSAKH-NDEDGILVCELSKSRRVTVRSWQGKVVV 60

Query: 61  DIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDN 104
           DIREFY KDGK++PGRKGI+LTMDQWK+LRDHAEDIDQAV +N
Sbjct: 61  DIREFYTKDGKELPGRKGISLTMDQWKILRDHAEDIDQAVAEN 99

[Close]

BLAST of Spo25065.1 vs. NCBI nr
Match: gi|593328692|ref|XP_007137773.1| (hypothetical protein PHAVU_009G154400g [Phaseolus vulgaris])

HSP 1 Score: 153.7 bits (387), Expect = 1.800e-34
Identity = 75/106 (70.75%), Postives = 94/106 (88.68%), Query Frame = 1

		  
Query: 1   MSGKFKRKENDGYASDGGSDGNAPPKKSVKREDDE--DGIVVCEISKNRRVSVRSWQGRV 60
           MSGK KR++ DG ASD  S+G+APPKK++KR+ D+  D IVVCEISKNRRVSVR+WQGR+
Sbjct: 1   MSGKAKRRDEDG-ASDADSEGHAPPKKTLKRDSDDESDSIVVCEISKNRRVSVRNWQGRI 60

Query: 61  MVDIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDNS 105
           +VDIREFY+KDGK+MPG+KGI+LTMDQW VLR H E+ID+AV++NS
Sbjct: 61  VVDIREFYLKDGKKMPGKKGISLTMDQWNVLRTHVEEIDKAVSENS 105

[Close]

BLAST of Spo25065.1 vs. NCBI nr
Match: gi|571457897|ref|XP_006580939.1| (PREDICTED: uncharacterized protein LOC100499936 isoform X1 [Glycine max])

HSP 1 Score: 152.9 bits (385), Expect = 3.100e-34
Identity = 74/106 (69.81%), Postives = 93/106 (87.74%), Query Frame = 1

		  
Query: 1   MSGKFKRKENDGYASDGGSDGNAPPKKSVKRE--DDEDGIVVCEISKNRRVSVRSWQGRV 60
           MSGK KR+++DG ASD  S+G+APPKKS+K++  DD D I VCEISKNRRV+VR+W+G +
Sbjct: 1   MSGKAKRRDDDG-ASDADSEGHAPPKKSLKKDSDDDPDSITVCEISKNRRVAVRNWKGSI 60

Query: 61  MVDIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDNS 105
           MVDIREFYVKDGKQ+PGRKGI+LTMDQW VLR+H E+ID+A+ +NS
Sbjct: 61  MVDIREFYVKDGKQLPGRKGISLTMDQWNVLRNHVEEIDKAINENS 105

[Close]

BLAST of Spo25065.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QRB0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_149820 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 2.300e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1

		  
Query: 1   MSGKFKRKENDGYASDGGSDGNAPPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRVMV 60
           MSGKFKRKENDGYASDGGSDGNAPPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRVMV
Sbjct: 1   MSGKFKRKENDGYASDGGSDGNAPPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRVMV 60

Query: 61  DIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDNS 105
           DIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDNS
Sbjct: 61  DIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDNS 104

[Close]

BLAST of Spo25065.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FDZ3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g078750 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.900e-35
Identity = 77/103 (74.76%), Postives = 91/103 (88.35%), Query Frame = 1

		  
Query: 1   MSGKFKRKENDGYASDGGSDGNAPPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRVMV 60
           MS K KRK++   ASD  SDGNAPPKKS K  +DEDGI+VCE+SK+RRV+VRSWQG+V+V
Sbjct: 1   MSAKSKRKDD---ASDADSDGNAPPKKSAKH-NDEDGILVCELSKSRRVTVRSWQGKVVV 60

Query: 61  DIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDN 104
           DIREFY KDGK++PGRKGI+LTMDQWK+LRDHAEDIDQAV +N
Sbjct: 61  DIREFYTKDGKELPGRKGISLTMDQWKILRDHAEDIDQAVAEN 99

[Close]

BLAST of Spo25065.1 vs. UniProtKB/TrEMBL
Match: V7AVU6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G154400g PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.200e-34
Identity = 75/106 (70.75%), Postives = 94/106 (88.68%), Query Frame = 1

		  
Query: 1   MSGKFKRKENDGYASDGGSDGNAPPKKSVKREDDE--DGIVVCEISKNRRVSVRSWQGRV 60
           MSGK KR++ DG ASD  S+G+APPKK++KR+ D+  D IVVCEISKNRRVSVR+WQGR+
Sbjct: 1   MSGKAKRRDEDG-ASDADSEGHAPPKKTLKRDSDDESDSIVVCEISKNRRVSVRNWQGRI 60

Query: 61  MVDIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDNS 105
           +VDIREFY+KDGK+MPG+KGI+LTMDQW VLR H E+ID+AV++NS
Sbjct: 61  VVDIREFYLKDGKKMPGKKGISLTMDQWNVLRTHVEEIDKAVSENS 105

[Close]

BLAST of Spo25065.1 vs. UniProtKB/TrEMBL
Match: A0A0B2PPL3_GLYSO (RNA polymerase II transcriptional coactivator KIWI OS=Glycine soja GN=glysoja_011908 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.100e-34
Identity = 74/106 (69.81%), Postives = 93/106 (87.74%), Query Frame = 1

		  
Query: 1   MSGKFKRKENDGYASDGGSDGNAPPKKSVKRE--DDEDGIVVCEISKNRRVSVRSWQGRV 60
           MSGK KR+++DG ASD  S+G+APPKKS+K++  DD D I VCEISKNRRV+VR+W+G +
Sbjct: 1   MSGKAKRRDDDG-ASDADSEGHAPPKKSLKKDSDDDPDSITVCEISKNRRVAVRNWKGSI 60

Query: 61  MVDIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDNS 105
           MVDIREFYVKDGKQ+PGRKGI+LTMDQW VLR+H E+ID+A+ +NS
Sbjct: 61  MVDIREFYVKDGKQLPGRKGISLTMDQWNVLRNHVEEIDKAINENS 105

[Close]

BLAST of Spo25065.1 vs. UniProtKB/TrEMBL
Match: I1KBM5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G155900 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.100e-34
Identity = 74/106 (69.81%), Postives = 93/106 (87.74%), Query Frame = 1

		  
Query: 1   MSGKFKRKENDGYASDGGSDGNAPPKKSVKRE--DDEDGIVVCEISKNRRVSVRSWQGRV 60
           MSGK KR+++DG ASD  S+G+APPKKS+K++  DD D I VCEISKNRRV+VR+W+G +
Sbjct: 1   MSGKAKRRDDDG-ASDADSEGHAPPKKSLKKDSDDDPDSITVCEISKNRRVAVRNWKGSI 60

Query: 61  MVDIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDNS 105
           MVDIREFYVKDGKQ+PGRKGI+LTMDQW VLR+H E+ID+A+ +NS
Sbjct: 61  MVDIREFYVKDGKQLPGRKGISLTMDQWNVLRNHVEEIDKAINENS 105

[Close]

BLAST of Spo25065.1 vs. ExPASy Swiss-Prot
Match: KIWI_ARATH (RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana GN=KIWI PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 6.600e-29
Identity = 64/107 (59.81%), Postives = 82/107 (76.64%), Query Frame = 1

		  
Query: 1   MSGKFKRKENDGYASDGGSDGNAPPKKSVKREDDED---GIVVCEISKNRRVSVRSWQGR 60
           MS + KRK+ D  ASD  S+ +AP KK  K  DD D    IVVC ISKNRRVSVR+W G+
Sbjct: 1   MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query: 61  VMVDIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDNS 105
           + +DIREFYVKDGK +PG+KGI+L++DQW  LR+HAEDI++A++D S
Sbjct: 61  IWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRNHAEDIEKALSDLS 107

[Close]

BLAST of Spo25065.1 vs. ExPASy Swiss-Prot
Match: KELP_ARATH (RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana GN=KELP PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.100e-12
Identity = 32/81 (39.51%), Postives = 53/81 (65.43%), Query Frame = 1

		  
Query: 20  DGNAPPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRVMVDIREFYVKDGKQMPGRKGI 79
           DG+    K  K  DD+  +++C +S  RRV+++ ++G+ +V IRE+Y KDGK++P  KGI
Sbjct: 78  DGDKDCGKGNKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDGKELPTSKGI 137

Query: 80  TLTMDQWKVLRDHAEDIDQAV 101
           +LT +QW   + +   I+ AV
Sbjct: 138 SLTDEQWSTFKKNMPAIENAV 158

[Close]

BLAST of Spo25065.1 vs. ExPASy Swiss-Prot
Match: TCP4_MOUSE (Activated RNA polymerase II transcriptional coactivator p15 OS=Mus musculus GN=Sub1 PE=1 SV=3)

HSP 1 Score: 68.2 bits (165), Expect = 6.200e-11
Identity = 34/79 (43.04%), Postives = 52/79 (65.82%), Query Frame = 1

		  
Query: 23  APPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRVMVDIREFYV-KDGKQMPGRKGITL 82
           A  K+S    DD     + +I K R VSVR ++G++++DIRE+++  +G+  PGRKGI+L
Sbjct: 50  ASSKQSSSSRDDN----MFQIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISL 109

Query: 83  TMDQWKVLRDHAEDIDQAV 101
            M+QW  L++   DID AV
Sbjct: 110 NMEQWSQLKEQISDIDDAV 124

[Close]

BLAST of Spo25065.1 vs. ExPASy Swiss-Prot
Match: TCP4_RAT (Activated RNA polymerase II transcriptional coactivator p15 OS=Rattus norvegicus GN=Sub1 PE=1 SV=3)

HSP 1 Score: 68.2 bits (165), Expect = 6.200e-11
Identity = 34/79 (43.04%), Postives = 52/79 (65.82%), Query Frame = 1

		  
Query: 23  APPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRVMVDIREFYV-KDGKQMPGRKGITL 82
           A  K+S    DD     + +I K R VSVR ++G++++DIRE+++  +G+  PGRKGI+L
Sbjct: 50  ASSKQSSSSRDDN----MFQIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISL 109

Query: 83  TMDQWKVLRDHAEDIDQAV 101
            M+QW  L++   DID AV
Sbjct: 110 NMEQWSQLKEQISDIDDAV 124

[Close]

BLAST of Spo25065.1 vs. ExPASy Swiss-Prot
Match: TCP4_CHICK (Activated RNA polymerase II transcriptional coactivator p15 OS=Gallus gallus GN=SUB1 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.100e-10
Identity = 35/83 (42.17%), Postives = 56/83 (67.47%), Query Frame = 1

		  
Query: 19  SDGNAPPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRVMVDIREFYV-KDGKQMPGRK 78
           S G A  K+S  R+++     + +I K R VSVR ++G+V++DIRE+++ ++G+  PGRK
Sbjct: 46  SKGAASSKQSSNRDEN-----MFQIGKMRYVSVRDFKGKVLIDIREYWMDQEGEMKPGRK 105

Query: 79  GITLTMDQWKVLRDHAEDIDQAV 101
           GI+L  +QW  L++   DID AV
Sbjct: 106 GISLNPEQWNQLKEQISDIDDAV 123

[Close]

BLAST of Spo25065.1 vs. TAIR (Arabidopsis)
Match: AT5G09250.1 (ssDNA-binding transcriptional regulator)

HSP 1 Score: 127.9 bits (320), Expect = 3.700e-30
Identity = 64/107 (59.81%), Postives = 82/107 (76.64%), Query Frame = 1

		  
Query: 1   MSGKFKRKENDGYASDGGSDGNAPPKKSVKREDDED---GIVVCEISKNRRVSVRSWQGR 60
           MS + KRK+ D  ASD  S+ +AP KK  K  DD D    IVVC ISKNRRVSVR+W G+
Sbjct: 1   MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query: 61  VMVDIREFYVKDGKQMPGRKGITLTMDQWKVLRDHAEDIDQAVTDNS 105
           + +DIREFYVKDGK +PG+KGI+L++DQW  LR+HAEDI++A++D S
Sbjct: 61  IWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRNHAEDIEKALSDLS 107

[Close]

BLAST of Spo25065.1 vs. TAIR (Arabidopsis)
Match: AT5G09240.2 (ssDNA-binding transcriptional regulator)

HSP 1 Score: 77.8 bits (190), Expect = 4.400e-15
Identity = 50/136 (36.76%), Postives = 74/136 (54.41%), Query Frame = 1

		  
Query: 1   MSGKFKRKENDGYASDGG--SDGNAPPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRV 60
           MS   KRK+ D  ASD    S+ +APPKK  K  D+ + I +C + KNRRV VR+  GR+
Sbjct: 1   MSENGKRKDEDVRASDDRDESETHAPPKKVAKPADEIEDIFICNLDKNRRVFVRNCNGRI 60

Query: 61  MVDIREFYVKDGKQMP--GRKGITLTMD----------------------------QWKV 105
            + IR+F+VKDG  +P   ++GI+L+++                            QW  
Sbjct: 61  WIAIRQFFVKDGITLPCNSKQGISLSLEQVFTSLFHCLCLPHVHMSCLLHETFFLMQWND 120

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BLAST of Spo25065.1 vs. TAIR (Arabidopsis)
Match: AT4G10920.1 (transcriptional coactivator p15 (PC4) family protein (KELP))

HSP 1 Score: 73.9 bits (180), Expect = 6.400e-14
Identity = 32/81 (39.51%), Postives = 53/81 (65.43%), Query Frame = 1

		  
Query: 20  DGNAPPKKSVKREDDEDGIVVCEISKNRRVSVRSWQGRVMVDIREFYVKDGKQMPGRKGI 79
           DG+    K  K  DD+  +++C +S  RRV+++ ++G+ +V IRE+Y KDGK++P  KGI
Sbjct: 78  DGDKDCGKGNKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDGKELPTSKGI 137

Query: 80  TLTMDQWKVLRDHAEDIDQAV 101
           +LT +QW   + +   I+ AV
Sbjct: 138 SLTDEQWSTFKKNMPAIENAV 158

The following BLAST results are available for this feature:

BLAST of Spo25065.1 vs. NCBI nr
BLAST of Spo25065.1 vs. UniProtKB/TrEMBL
BLAST of Spo25065.1 vs. ExPASy Swiss-Prot
BLAST of Spo25065.1 vs. TAIR (Arabidopsis)

BLAST of Spo25065.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902181989\|gb\|KNA09844.1\|	3.2e-52	100.	hypothetical protein SOVF_1498...	[more]
gi\|731327233\|ref\|XP_010674417.1\|	2.8e-35	74.7	PREDICTED: RNA polymerase II t...	[more]
gi\|870862858\|gb\|KMT14046.1\|	2.8e-35	74.7	hypothetical protein BVRB_4g07...	[more]
gi\|593328692\|ref\|XP_007137773.1\|	1.8e-34	70.7	hypothetical protein PHAVU_009...	[more]
gi\|571457897\|ref\|XP_006580939.1\|	3.1e-34	69.8	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo25065.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9QRB0_SPIOL	2.3e-52	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8FDZ3_BETVU	1.9e-35	74.7	Uncharacterized protein OS=Bet...	[more]
V7AVU6_PHAVU	1.2e-34	70.7	Uncharacterized protein OS=Pha...	[more]
A0A0B2PPL3_GLYSO	2.1e-34	69.8	RNA polymerase II transcriptio...	[more]
I1KBM5_SOYBN	2.1e-34	69.8	Uncharacterized protein OS=Gly...	[more]

BLAST of Spo25065.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
KIWI_ARATH	6.6e-29	59.8	RNA polymerase II transcriptio...	[more]
KELP_ARATH	1.1e-12	39.5	RNA polymerase II transcriptio...	[more]
TCP4_MOUSE	6.2e-11	43.0	Activated RNA polymerase II tr...	[more]
TCP4_RAT	6.2e-11	43.0	Activated RNA polymerase II tr...	[more]
TCP4_CHICK	1.1e-10	42.1	Activated RNA polymerase II tr...	[more]

BLAST of Spo25065.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3

Position :

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Match Name	E-value	Identity	Description
AT5G09250.1	3.7e-30	59.8	ssDNA-binding transcriptional ...	[more]
AT5G09240.2	4.4e-15	36.7	ssDNA-binding transcriptional ...	[more]
AT4G10920.1	6.4e-14	39.5	transcriptional coactivator p1...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003173	Transcriptional coactivator p15 (PC4)	PFAM	PF02229	PC4	coord: 41..91 score: 2.5
IPR009044	ssDNA-binding transcriptional regulator	GENE3D	2.30.31.10		coord: 40..101 score: 7.8
IPR009044	ssDNA-binding transcriptional regulator	unknown	SSF54447	ssDNA-binding transcriptional regulator domain	coord: 40..101 score: 2.43
None	No IPR available	PANTHER	PTHR13215	RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR	coord: 6..104 score: 2.3

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0008283	cell proliferation
biological_process	GO:0009987	cellular process
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0001510	RNA methylation
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0042545	cell wall modification
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0044425	membrane part
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005744	mitochondrial inner membrane presequence translocase complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0016020	membrane
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005618	cell wall
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009536	plastid
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003713	transcription coactivator activity
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0015450	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo23241	0.70	Barchart \| Table
Spo02971	0.68	Barchart \| Table
Spo07920	0.68	Barchart \| Table
Spo20997	0.68	Barchart \| Table
Spo08768	0.68	Barchart \| Table
Spo26884	0.67	Barchart \| Table
Spo12265	0.67	Barchart \| Table
Spo13378	0.67	Barchart \| Table
Spo16514	0.66	Barchart \| Table
Spo15604	0.66	Barchart \| Table
Spo10599	0.66	Barchart \| Table
Spo07223	0.66	Barchart \| Table
Spo16627	0.65	Barchart \| Table