Spo25111 (gene)

Overview
NameSpo25111
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr4 : 11456035 .. 11459108 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTTGCCCATTTTCGAGAAGAACTCATGTTTGTTTTTGCATTTTTCTGGTTTTGGTTTCTTTTCTTAGTAACTGACTTTTAGTGAACCCTTCTTTTCAACCCATTTTTGGTAAGTCAACATATTCATGGTTGGTTACTTGGTTAGTGGTTATGCACTTTTACAATCCATGGTGCTTTTCCAGCAATGTCAACCGACCACGTGTTATCATATCAACCATCTATTTTTTGGGTTTTTCCAGCTACTTTCTGTTTCTCAAAAAAAAAAAAAAAAATCCGTCTGTAAAATTTCAGAAGGAAATAGAGATATGAAGAGGTTGAAAAAAAAACCAAGTTTTGGACTCTCTTCGGTCACCACTGTAATTTCAGTTAATGCTAGTAATTACCCCTGTCAAAAATTGACCAAACCTGAAAATTTTGGGTATTGAACAAGATTTTGTGACCCATAACCCAATTTTAACCGAACCTGAAAAGTAATGGGTCGAAATCCGACTGAACCTGTTTTTGACCCGACCGATTAAAAATTGTTGTATTCATAATTTATAAATGTAATTATAAGAAATTTTAAGCATATCAAGCACGTTGTTGTTACTATTGATGGGTGTAAATGTGTAATACGATTTTGATTTAAATCATACACCATTTTATGGTTGAAGTTGACTAAATATAAACTTGTGTGTGTAAATTTGTTAATTTGTGCGCATATTTTGTATACTTATTACCCAAATTAATGAAAACATAATACGTAGTACTCCATATATGTTTTAAAATATCTCAACCCTTTGGGTCGACCCGATCCCGAAAGTTATGGGTCTTGAACAAGCATGTGTAAACCCGAACCCGAAAGCAAATTTTCACAACCCGACCCGTTTGACAGGTCTACTAGCAATGGATACTACTGAAATCATTTTCTGCAATTCTGCTTTCTCTCCCTGTGATTTTATGAGAAGCAACAATTTGAAGAGAAGCAAATACAAGCAATTGCATTCATGATCTTTACAAAATAGCTACTTCGTATATAACAGTGTAATTGCAAAATGATACAGCTTAGATAGACTGCAAAATGTGGGCTATGGATGTAATTGTGAAAGAAAATGGCTTCCAAGCATAATTAATAAAGAGATTAAGCTGTAATCTTGTTTACTCTGAAGGAATCCATTGCTTGACGAATATTGCTTCCTCCTTCTCTGAATACATCTTCTGGTGCTTGTAACCTCAACTCATATAGCCTGTTGTTTTCCACTCCGATAACAGAAAGGTACCTTCGATCCCATTCAAGCCTAACCTTTCGATCCTCAGGCATCACGGCCAACTCGTTGTTGTTGGCATACGATTTGACATTCACCTGTTTTTATGCCATCAAAGTGTGTCAGAAGGGAAAACAGTAACATCCCTAATATAAATGAGCTAGTAGTCCAAAACTCCAAATTCAACAGCAAAAACCTAAATTTTCTGTAAGTCATAGACATGCTAATTGACTTGAAAAGACCATGAGTGTCACGGTCTGAATGTTTTGACACCGGATCCGTGCGGCGCCCTCTTGCCTATTGGCGGCAAGGAGGCAAGCCTTGTGCGGAATGAGTGTCTTGTGACTCGTAGGGGCACGAGTAAGCGTCTAATCCGAAAGGGGCACTCTTGCCTATTGGCGGCAAGAGCGAGGGTCGAGAGTCGAACGGGGCGCTTGTGTGCGCACAGCGGGCACAAGCGGGACCGTCGACGAGAGTGTATCTGTTTTGAGGGGGACTTTGTTGGGTCTTAGAAAGCTTAAAAGCATGCGACAGCACAATATCTATAAAGGCTAGCAACAACACATGAATTAAGCAAAGACAACTTCTGATGAGAGGTATTGGTTCATACCCCTCATAGAGGTTTATTTTGAATTAGCTAAAACTTGTCAGTGAACACTGGAATTACAGTAACATAATAATTCTCCCTAAAGCCTAGAAAACTATTAGAAAGATCCTAGAAAGCAATAGAAAGGAGAAATACAAGTAAAGGAAGGTTGGATTCTAACAATGAGTTTGTGACTATAACTTCACTTGAGGACTCCATAAACCAAAAGCACCCATTGGCAATTTCACTACACTTCACTAAGGCTCTATTTGTTTGGTAGGGTGTAAAACATTTTCCGGGAAAACGGTTTTCCTCTATTTTCAATTTTACATTGTTTGGTTTGAGGTGTGTAAAACCATTTTCCCTAGAGTAAAGTTGCTCTCCCAATGATGGAAAACCATTTCCCCTTCAAAATGAAGGGAAAACAGTTTTCCTTCCTTTTCCTTATATGTCTTATACACTCCTCTCACTACCTGTTTACTTTCTTTTTCTTTTTCCTTTTCGATTTTCTAACATGGAACCAAACAACGGAAAACAAATTTTGGAATTGTGTCTTCCATTGCAAATTGTTTCCATGAAAACCATTTTACACTGAAAATGTCTTACACGGTTACACCCAACCAAATAGAGCCTTAAAACACCAATCACTTTCCTTTTCCTAGCTCCCAACCCCCACCCGCTGCAAAAAGAAGGGGGAAAAACACTTTCTCTGCCATTTGGGAAACTAAGGATTTATTGACCATAACTTCACCTAAAGACTCCATAAACCAAAAGCACCTATTGCCAATCCGACCAAGCATATTTCATACTTCACTGACCACTAATGCTATTTAGCTGGTCAAACCAACTAAGTGACTAACACATTTAAAATTTACCAAATGCGTAGTTAATCCAATTAGCTAAGTAGCTAGCTAACACATGACCTGAACAAATTATAACAATATACTAAGATTTTAGATCAGTAAGGCCCTTACTTCAATTTGATAATAGAGCCTCCCATCATCAGCAACCCTAGAAGATGTTGAGACAATGTTTGCTTCACGCCTAACACCAAGTCTTGTAGACATGAACTCTGTTAGGTACTGCTTCAGTACGTTCTTCCCAGCTTCTTCTGGTGGGCCCAAATCCTCAACACTCTTGTACCTAGATGACGAGGGTGAAGATATATTCACAGACATATTTTCATCAAGAACAAAAGGATCCCTGAAGAATATGTCTGCCCCAGCACCTTTAACTTGA

mRNA sequence

ATGGATTTTGCCCATTTTCGAGAAGAACTCATGTTTAGCCTCCCATCATCAGCAACCCTAGAAGATGTTGAGACAATGTTTGCTTCACGCCTAACACCAAGTCTTGTAGACATGAACTCTGTTAGGTACTGCTTCAGTACGTTCTTCCCAGCTTCTTCTGGTGGGCCCAAATCCTCAACACTCTTGTACCTAGATGACGAGGGTGAAGATATATTCACAGACATATTTTCATCAAGAACAAAAGGATCCCTGAAGAATATGTCTGCCCCAGCACCTTTAACTTGA

Coding sequence (CDS)

ATGGATTTTGCCCATTTTCGAGAAGAACTCATGTTTAGCCTCCCATCATCAGCAACCCTAGAAGATGTTGAGACAATGTTTGCTTCACGCCTAACACCAAGTCTTGTAGACATGAACTCTGTTAGGTACTGCTTCAGTACGTTCTTCCCAGCTTCTTCTGGTGGGCCCAAATCCTCAACACTCTTGTACCTAGATGACGAGGGTGAAGATATATTCACAGACATATTTTCATCAAGAACAAAAGGATCCCTGAAGAATATGTCTGCCCCAGCACCTTTAACTTGA

Protein sequence

MDFAHFREELMFSLPSSATLEDVETMFASRLTPSLVDMNSVRYCFSTFFPASSGGPKSSTLLYLDDEGEDIFTDIFSSRTKGSLKNMSAPAPLT
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo25111.1Spo25111.1mRNA


Homology
[Close]
BLAST of Spo25111.1 vs. UniProtKB/TrEMBL
Match: A0A0E0AI30_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 6.200e-25
Identity = 61/87 (70.11%), Postives = 69/87 (79.31%), Query Frame = 1 

		  

Query: 8   EELMFSLPSSATLEDVETMFASRLTPSLVDMNSVRYCFSTFFPASSGGPKSSTLLYLDDE 67
           + L  SLPSSAT +D + MF  R TPSLVDMNSV+YC ST   A SGGP+SST+ Y DDE
Sbjct: 84  KNLTKSLPSSATFDDADRMFEVRRTPSLVDMNSVKYCCSTLSAAFSGGPRSSTVTYFDDE 143

Query: 68  GEDIFTDIFSSRTKGSLKNMSAPAPLT 95
           G+DI TD+FSSRTKGSLKNMSAPAP T
Sbjct: 144 GDDISTDMFSSRTKGSLKNMSAPAPRT 170
The following BLAST results are available for this feature:
BLAST of Spo25111.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25111.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0E0AI30_9ORYZ6.2e-2570.1Uncharacterized protein OS=Ory... [more]
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BLAST of Spo25111.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25111.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0048481 plant ovule development
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006364 rRNA processing
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0010207 photosystem II assembly
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0009507 chloroplast
molecular_function GO:0031177 phosphopantetheine binding
molecular_function GO:0016491 oxidoreductase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo152440.69Barchart | Table
Spo108200.68Barchart | Table
Spo057080.66Barchart | Table
Spo193050.66Barchart | Table