Spo25138 (gene) | SpinachBase

Overview


Name	Spo25138
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Chlorophyll a-b binding protein 8, chloroplastic (LHCII type I CAB-8) (Precursor)
Location	SpoScf_01928 : 60664 .. 62434 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGAGTCGATGTCGTGGTAGTGGGCCCACAACAACCACGTCAAACATACACTATCAATAATGGCACTGTATACAAAACCGAAGAAAGTGACTAAGAAAAAACAATATATTATGATACACTTGATTCCACAAAACATGAAGATGTGGATGGAGTCTAACATTTGATTGGTTCCTTATCTATCCACCATATATCCATTAACATATCTTCCCTAGATTTCACTCATCCTACTTGGCACCTCTCATCAAGTCTATTTTGATCTCCTCAACCCCACAAACTAGTTGATAAAATCAGCATTCTAACAAATACAACATCAAAATTTATCAGTAACACAAGCTAAGTTAGAGTGGGGGAGAGGAGAGTGCGCAAAAACATCAGCAGCGCGCAGCAAATTGAGGTCAGGAAAGCAAAGCAAAGAAATGGCAGCTGCAACATCTGCTACAGCAATAGTAAATGGGTTCACCTCGCCTTTCTTGTCGGGAGGGAAGAAGAGTAGTCAGTCACTACTCTTTGTTAACAGCAAAGTCGGTGCTGGTGTTTCTACTACCAGCAGGAAGTTGGTTGTCGTAGCTGCTGCAGCTGCTCCTAAAAAGTCTTGGATTCCTGCTGTTAAAGGTGGTGGCAACTTCCTTGACCCTGAGTGGCTAGACGGCTCGTAAGTTCTCTCTCATTATTCTTTAAAGAGTGTATGTTTTTAAGGTTAAGGTTCCTAGATTTCAAGAGTGTATGTTTTTAACACATATTTATGCCAAAAAACAGACTCCCAGGAGACTTCGGATTCGACCCACTAGGTCTAGGGAAGGACCCAGCATTCCTGAAATGGTACAGAGAAGCAGAGCTAATCCATGGGAGATGGGCAATGCTAGCAGTTCTAGGGATATTTGTTGGACAAGCATGGACTGGAATCCCATGGTTTGAGGCTGGTGCTGACCCAGGTGCCGTGGCTCCGTTCTCATTCGGAACACTACTAGGGACTCAACTGTTGCTCATGGGATGGGTAGAGAGCAAGAGATGGGTGGATTTCTTTGACCCGGATTCACAATCTGTGGAATGGGCAACTCCATGGTCAAGAACTGCTGAGAACTTTAGTAACTCAACAGGAGAACAAGGTTACCCTGGTGGCAAATTTTTTGACCCATTGAGCTTAGCAGGAACTATCAGTAATGGTGTTTACAATCCAGATACAGACAAGTTAGAGAGACTCAAGTTGGCTGAAATTAAGCATGCTAGACTTGCTATGTTAGCTATGCTCATTTTTTACTTCGAAGCTGGACAAGGGAAAACACCCCTTGGAGCTTTGGGTTTGTAAACAAGTATTAATTTATTGAGATATTGATCTGGTGTAATTAAATGAAACAATCTCAAATGCAAATGTCACATTTGTTTCTAGTACTAATATTACATTCTCAATATTCTCCTAATTTCTTCACACCATTTTTTATTTCCAACATCCAAAATTCAGTACTAACATTCACTCATATGACATTTGTTTGTGGTAGTAAAATGGTGTTCCTTTGCCGAGGTTTTTCTTGAAATAATGTCAGCTATTAGTTACAATGTCAGATTGGTATTATAGCCTTCAACTAGTTGTGAAAAATGATTTTGGCATACCTCTATTGAGTAGAACACATAAAATTGTGCTTTCATGGTGGATATGCCAAAATATTTCCCCCTTTTGCTCAGTTTTTAGATCATTAAGCACACTGATACTCTATGTTACTCAGACTCGGGTATGGGTGTCGGACACGGGTATGGATCCGAGTGTCGGACCCAG

mRNA sequence

GGGAGTCGATGTCGTGGTAGTGGGCCCACAACAACCACGTCAAACATACACTATCAATAATGGCACTGTATACAAAACCGAAGAAAGTGACTAAGAAAAAACAATATATTATGATACACTTGATTCCACAAAACATGAAGATGTGGATGGAGTCTAACATTTGATTGGTTCCTTATCTATCCACCATATATCCATTAACATATCTTCCCTAGATTTCACTCATCCTACTTGGCACCTCTCATCAAGTCTATTTTGATCTCCTCAACCCCACAAACTAGTTGATAAAATCAGCATTCTAACAAATACAACATCAAAATTTATCAGTAACACAAGCTAAGTTAGAGTGGGGGAGAGGAGAGTGCGCAAAAACATCAGCAGCGCGCAGCAAATTGAGGTCAGGAAAGCAAAGCAAAGAAATGGCAGCTGCAACATCTGCTACAGCAATAGTAAATGGGTTCACCTCGCCTTTCTTGTCGGGAGGGAAGAAGAGTAGTCAGTCACTACTCTTTGTTAACAGCAAAGTCGGTGCTGGTGTTTCTACTACCAGCAGGAAGTTGGTTGTCGTAGCTGCTGCAGCTGCTCCTAAAAAGTCTTGGATTCCTGCTGTTAAAGGTGGTGGCAACTTCCTTGACCCTGAGTGGCTAGACGGCTCACTCCCAGGAGACTTCGGATTCGACCCACTAGGTCTAGGGAAGGACCCAGCATTCCTGAAATGGTACAGAGAAGCAGAGCTAATCCATGGGAGATGGGCAATGCTAGCAGTTCTAGGGATATTTGTTGGACAAGCATGGACTGGAATCCCATGGTTTGAGGCTGGTGCTGACCCAGGTGCCGTGGCTCCGTTCTCATTCGGAACACTACTAGGGACTCAACTGTTGCTCATGGGATGGGTAGAGAGCAAGAGATGGGTGGATTTCTTTGACCCGGATTCACAATCTGTGGAATGGGCAACTCCATGGTCAAGAACTGCTGAGAACTTTAGTAACTCAACAGGAGAACAAGGTTACCCTGGTGGCAAATTTTTTGACCCATTGAGCTTAGCAGGAACTATCAGTAATGGTGTTTACAATCCAGATACAGACAAGTTAGAGAGACTCAAGTTGGCTGAAATTAAGCATGCTAGACTTGCTATGTTAGCTATGCTCATTTTTTACTTCGAAGCTGGACAAGGGAAAACACCCCTTGGAGCTTTGGGTTTGTAAACAAGTATTAATTTATTGAGATATTGATCTGGTGTAATTAAATGAAACAATCTCAAATGCAAATGTCACATTTGTTTCTAGTACTAATATTACATTCTCAATATTCTCCTAATTTCTTCACACCATTTTTTATTTCCAACATCCAAAATTCAGTACTAACATTCACTCATATGACATTTGTTTGTGGTAGTAAAATGGTGTTCCTTTGCCGAGGTTTTTCTTGAAATAATGTCAGCTATTAGTTACAATGTCAGATTGGTATTATAGCCTTCAACTAGTTGTGAAAAATGATTTTGGCATACCTCTATTGAGTAGAACACATAAAATTGTGCTTTCATGGTGGATATGCCAAAATATTTCCCCCTTTTGCTCAGTTTTTAGATCATTAAGCACACTGATACTCTATGTTACTCAGACTCGGGTATGGGTGTCGGACACGGGTATGGATCCGAGTGTCGGACCCAG

Coding sequence (CDS)

ATGGCAGCTGCAACATCTGCTACAGCAATAGTAAATGGGTTCACCTCGCCTTTCTTGTCGGGAGGGAAGAAGAGTAGTCAGTCACTACTCTTTGTTAACAGCAAAGTCGGTGCTGGTGTTTCTACTACCAGCAGGAAGTTGGTTGTCGTAGCTGCTGCAGCTGCTCCTAAAAAGTCTTGGATTCCTGCTGTTAAAGGTGGTGGCAACTTCCTTGACCCTGAGTGGCTAGACGGCTCACTCCCAGGAGACTTCGGATTCGACCCACTAGGTCTAGGGAAGGACCCAGCATTCCTGAAATGGTACAGAGAAGCAGAGCTAATCCATGGGAGATGGGCAATGCTAGCAGTTCTAGGGATATTTGTTGGACAAGCATGGACTGGAATCCCATGGTTTGAGGCTGGTGCTGACCCAGGTGCCGTGGCTCCGTTCTCATTCGGAACACTACTAGGGACTCAACTGTTGCTCATGGGATGGGTAGAGAGCAAGAGATGGGTGGATTTCTTTGACCCGGATTCACAATCTGTGGAATGGGCAACTCCATGGTCAAGAACTGCTGAGAACTTTAGTAACTCAACAGGAGAACAAGGTTACCCTGGTGGCAAATTTTTTGACCCATTGAGCTTAGCAGGAACTATCAGTAATGGTGTTTACAATCCAGATACAGACAAGTTAGAGAGACTCAAGTTGGCTGAAATTAAGCATGCTAGACTTGCTATGTTAGCTATGCTCATTTTTTACTTCGAAGCTGGACAAGGGAAAACACCCCTTGGAGCTTTGGGTTTGTAA

Protein sequence

MAAATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEAGQGKTPLGALGL

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo25138.1	Spo25138.1	mRNA

Homology

[Close]

BLAST of Spo25138.1 vs. NCBI nr
Match: gi|543939|sp|P36494.1|CB4_SPIOL (RecName: Full=Chlorophyll a-b binding protein CP24, chloroplastic; Flags: Precursor [Spinacia oleracea])

HSP 1 Score: 530.8 bits (1366), Expect = 1.400e-147
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 1


		  
Query: 1   MAAATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSW 60
           MAAATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSW
Sbjct: 1   MAAATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSW 60

Query: 61  IPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIF 120
           IPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIF
Sbjct: 61  IPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIF 120

Query: 121 VGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATP 180
           VGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATP
Sbjct: 121 VGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATP 180

Query: 181 WSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAML 240
           WSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAML
Sbjct: 181 WSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAML 240

Query: 241 AMLIFYFEAGQGKTPLGALGL 262
           AMLIFYFEAGQGKTPLGALGL
Sbjct: 241 AMLIFYFEAGQGKTPLGALGL 261

[Close]

BLAST of Spo25138.1 vs. NCBI nr
Match: gi|731374120|ref|XP_010666865.1| (PREDICTED: chlorophyll a-b binding protein CP24, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 486.9 bits (1252), Expect = 2.200e-134
Identity = 242/268 (90.30%), Postives = 254/268 (94.78%), Query Frame = 1


		  
Query: 1   MAAATSATAIVNGFTSPFLSGGKKSSQSLLF-VNSKVGAG------VSTTSRKLVVVAAA 60
           MAAATSATA+VNGFTSPFLSGGKKSSQSL   +N+KVGAG      +STT R  VVVAAA
Sbjct: 1   MAAATSATAVVNGFTSPFLSGGKKSSQSLFVAINNKVGAGAGAGAGISTTRR--VVVAAA 60

Query: 61  AAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAM 120
           AAPKKSWIPAVKGGGNF+DPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAM
Sbjct: 61  AAPKKSWIPAVKGGGNFVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAM 120

Query: 121 LAVLGIFVGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQ 180
           LAV+GI VGQAW+GIPWFEAGADPGA+APFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQ
Sbjct: 121 LAVVGILVGQAWSGIPWFEAGADPGALAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQ 180

Query: 181 SVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIK 240
           SVEWATPWSRTAENFSN+TGEQGYPGGKFFDPLSLAGTI+NGVY PDT+KLERLKLAEIK
Sbjct: 181 SVEWATPWSRTAENFSNATGEQGYPGGKFFDPLSLAGTINNGVYVPDTEKLERLKLAEIK 240

Query: 241 HARLAMLAMLIFYFEAGQGKTPLGALGL 262
           H+RLAMLAMLIFYFEAGQGKTPLGALGL
Sbjct: 241 HSRLAMLAMLIFYFEAGQGKTPLGALGL 266

[Close]

BLAST of Spo25138.1 vs. NCBI nr
Match: gi|502077136|ref|XP_004485563.1| (PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Cicer arietinum])

HSP 1 Score: 443.7 bits (1140), Expect = 2.200e-121
Identity = 213/261 (81.61%), Postives = 236/261 (90.42%), Query Frame = 1


		  
Query: 3   AATSATAIVNGFTSPFLSGGKKSSQSLL--FVNSKVGAGVSTTSRKLVVVAAAAAPKKSW 62
           AA ++ A++NG  S FL GGK+S   LL   +  KVGA  +  S + +VVAAAAAPKKSW
Sbjct: 2   AAATSGAVLNGLGSSFLCGGKRSQTLLLATAIGGKVGA--AAVSPRRLVVAAAAAPKKSW 61

Query: 63  IPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIF 122
           IP V+GGGNF+DPEWLDGSLPGDFGFDPLGLGKDP+FLKWYREAELIHGRWAM AVLGIF
Sbjct: 62  IPGVRGGGNFIDPEWLDGSLPGDFGFDPLGLGKDPSFLKWYREAELIHGRWAMAAVLGIF 121

Query: 123 VGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATP 182
           VGQAW+G+PWFEAGADP A+APFSFGTLLGTQL+LMGWVESKRWVDFF+PDSQS+EWATP
Sbjct: 122 VGQAWSGVPWFEAGADPNAIAPFSFGTLLGTQLILMGWVESKRWVDFFNPDSQSIEWATP 181

Query: 183 WSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAML 242
           WS+TAENF+N+TG+QGYPGGKFFDPLSLAGTI NGVY PDTDKLERLKLAEIKHAR+AML
Sbjct: 182 WSKTAENFANATGDQGYPGGKFFDPLSLAGTIQNGVYIPDTDKLERLKLAEIKHARIAML 241

Query: 243 AMLIFYFEAGQGKTPLGALGL 262
           AMLIFYFEAGQGKTPLGALGL
Sbjct: 242 AMLIFYFEAGQGKTPLGALGL 260

[Close]

BLAST of Spo25138.1 vs. NCBI nr
Match: gi|720042292|ref|XP_010269191.1| (PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 443.7 bits (1140), Expect = 2.200e-121
Identity = 216/262 (82.44%), Postives = 240/262 (91.60%), Query Frame = 1


		  
Query: 3   AATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGA---GVSTTSRKLVVVAAAAAPKKS 62
           +ATSA A++NG +SPFLSGGKKS Q+LL   S +GA   G +   RKL+V AAAA  KKS
Sbjct: 4   SATSAAALLNGLSSPFLSGGKKS-QNLL--TSSIGARVGGAAVAPRKLIVAAAAA--KKS 63

Query: 63  WIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGI 122
           WIPA+KGGGNF+DPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAM AV+GI
Sbjct: 64  WIPAIKGGGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI 123

Query: 123 FVGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWAT 182
           FVGQAW+GIPWFEAGADPGA+APFSFG+LLGTQLLLMGWVESKRWVDFF+P+SQSVEWAT
Sbjct: 124 FVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWAT 183

Query: 183 PWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAM 242
           PWS+TAENF+N+TG+QGYPGGKFFDPLS AGTI +GVY PD +KLERLKLAEIKHAR+AM
Sbjct: 184 PWSKTAENFANATGDQGYPGGKFFDPLSFAGTIKDGVYIPDVEKLERLKLAEIKHARIAM 243

Query: 243 LAMLIFYFEAGQGKTPLGALGL 262
           LAMLIFYFEAGQGKTPLGALGL
Sbjct: 244 LAMLIFYFEAGQGKTPLGALGL 260

[Close]

BLAST of Spo25138.1 vs. NCBI nr
Match: gi|734405712|gb|KHN33514.1| (Chlorophyll a-b binding protein CP24 10A, chloroplastic [Glycine soja])

HSP 1 Score: 443.7 bits (1140), Expect = 2.200e-121
Identity = 217/263 (82.51%), Postives = 239/263 (90.87%), Query Frame = 1


		  
Query: 1   MAAATSATAIVNGFTSPFLSGGKKSSQSLLF--VNSKVGAGVSTTSRKLVVVAAAAAPKK 60
           MAAATS  A++NG  S FLSGG +S Q+LL   +  KVGA V+   R+L+VV AAAAPKK
Sbjct: 1   MAAATSG-AVLNGLGSSFLSGGNRS-QTLLATAIGGKVGAAVTVNPRRLIVV-AAAAPKK 60

Query: 61  SWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLG 120
           SW+P V+GGGN +DPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAM AVLG
Sbjct: 61  SWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLG 120

Query: 121 IFVGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWA 180
           IFVGQAW+G+PWFEAGADP A+APFSFGTLLGTQL+LMGWVESKRWVDFF+PDSQSVEWA
Sbjct: 121 IFVGQAWSGVPWFEAGADPNAIAPFSFGTLLGTQLILMGWVESKRWVDFFNPDSQSVEWA 180

Query: 181 TPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLA 240
           TPWSRTAENF+N+TGEQGYPGGKFFDPLS AGTI +GVY PDT+KLERLKLAEIKHAR+A
Sbjct: 181 TPWSRTAENFANATGEQGYPGGKFFDPLSFAGTIKDGVYIPDTEKLERLKLAEIKHARIA 240

Query: 241 MLAMLIFYFEAGQGKTPLGALGL 262
           MLAMLIFYFEAGQGKTPLGALGL
Sbjct: 241 MLAMLIFYFEAGQGKTPLGALGL 260

[Close]

BLAST of Spo25138.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RAF2_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea GN=SOVF_095480 PE=3 SV=1)

HSP 1 Score: 530.8 bits (1366), Expect = 9.400e-148
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 1


		  
Query: 1   MAAATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSW 60
           MAAATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSW
Sbjct: 1   MAAATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSW 60

Query: 61  IPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIF 120
           IPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIF
Sbjct: 61  IPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIF 120

Query: 121 VGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATP 180
           VGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATP
Sbjct: 121 VGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATP 180

Query: 181 WSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAML 240
           WSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAML
Sbjct: 181 WSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAML 240

Query: 241 AMLIFYFEAGQGKTPLGALGL 262
           AMLIFYFEAGQGKTPLGALGL
Sbjct: 241 AMLIFYFEAGQGKTPLGALGL 261

[Close]

BLAST of Spo25138.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B7L7_BETVU (Chlorophyll a-b binding protein, chloroplastic OS=Beta vulgaris subsp. vulgaris GN=BVRB_005040 PE=3 SV=1)

HSP 1 Score: 486.9 bits (1252), Expect = 1.600e-134
Identity = 242/268 (90.30%), Postives = 254/268 (94.78%), Query Frame = 1


		  
Query: 1   MAAATSATAIVNGFTSPFLSGGKKSSQSLLF-VNSKVGAG------VSTTSRKLVVVAAA 60
           MAAATSATA+VNGFTSPFLSGGKKSSQSL   +N+KVGAG      +STT R  VVVAAA
Sbjct: 1   MAAATSATAVVNGFTSPFLSGGKKSSQSLFVAINNKVGAGAGAGAGISTTRR--VVVAAA 60

Query: 61  AAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAM 120
           AAPKKSWIPAVKGGGNF+DPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAM
Sbjct: 61  AAPKKSWIPAVKGGGNFVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAM 120

Query: 121 LAVLGIFVGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQ 180
           LAV+GI VGQAW+GIPWFEAGADPGA+APFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQ
Sbjct: 121 LAVVGILVGQAWSGIPWFEAGADPGALAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQ 180

Query: 181 SVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIK 240
           SVEWATPWSRTAENFSN+TGEQGYPGGKFFDPLSLAGTI+NGVY PDT+KLERLKLAEIK
Sbjct: 181 SVEWATPWSRTAENFSNATGEQGYPGGKFFDPLSLAGTINNGVYVPDTEKLERLKLAEIK 240

Query: 241 HARLAMLAMLIFYFEAGQGKTPLGALGL 262
           H+RLAMLAMLIFYFEAGQGKTPLGALGL
Sbjct: 241 HSRLAMLAMLIFYFEAGQGKTPLGALGL 266

[Close]

BLAST of Spo25138.1 vs. UniProtKB/TrEMBL
Match: K7M9Q3_SOYBN (Chlorophyll a-b binding protein, chloroplastic OS=Glycine max GN=GLYMA_15G052400 PE=3 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 1.500e-121
Identity = 217/263 (82.51%), Postives = 239/263 (90.87%), Query Frame = 1


		  
Query: 1   MAAATSATAIVNGFTSPFLSGGKKSSQSLLF--VNSKVGAGVSTTSRKLVVVAAAAAPKK 60
           MAAATS  A++NG  S FLSGG +S Q+LL   +  KVGA V+   R+L+VV AAAAPKK
Sbjct: 1   MAAATSG-AVLNGLGSSFLSGGNRS-QTLLATAIGGKVGAAVTVNPRRLIVV-AAAAPKK 60

Query: 61  SWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLG 120
           SW+P V+GGGN +DPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAM AVLG
Sbjct: 61  SWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLG 120

Query: 121 IFVGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWA 180
           IFVGQAW+G+PWFEAGADP A+APFSFGTLLGTQL+LMGWVESKRWVDFF+PDSQSVEWA
Sbjct: 121 IFVGQAWSGVPWFEAGADPNAIAPFSFGTLLGTQLILMGWVESKRWVDFFNPDSQSVEWA 180

Query: 181 TPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLA 240
           TPWSRTAENF+N+TGEQGYPGGKFFDPLS AGTI +GVY PDT+KLERLKLAEIKHAR+A
Sbjct: 181 TPWSRTAENFANATGEQGYPGGKFFDPLSFAGTIKDGVYIPDTEKLERLKLAEIKHARIA 240

Query: 241 MLAMLIFYFEAGQGKTPLGALGL 262
           MLAMLIFYFEAGQGKTPLGALGL
Sbjct: 241 MLAMLIFYFEAGQGKTPLGALGL 260

[Close]

BLAST of Spo25138.1 vs. UniProtKB/TrEMBL
Match: A0A0B2RMF5_GLYSO (Chlorophyll a-b binding protein, chloroplastic OS=Glycine soja GN=glysoja_005556 PE=3 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 1.500e-121
Identity = 217/263 (82.51%), Postives = 239/263 (90.87%), Query Frame = 1


		  
Query: 1   MAAATSATAIVNGFTSPFLSGGKKSSQSLLF--VNSKVGAGVSTTSRKLVVVAAAAAPKK 60
           MAAATS  A++NG  S FLSGG +S Q+LL   +  KVGA V+   R+L+VV AAAAPKK
Sbjct: 1   MAAATSG-AVLNGLGSSFLSGGNRS-QTLLATAIGGKVGAAVTVNPRRLIVV-AAAAPKK 60

Query: 61  SWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLG 120
           SW+P V+GGGN +DPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAM AVLG
Sbjct: 61  SWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLG 120

Query: 121 IFVGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWA 180
           IFVGQAW+G+PWFEAGADP A+APFSFGTLLGTQL+LMGWVESKRWVDFF+PDSQSVEWA
Sbjct: 121 IFVGQAWSGVPWFEAGADPNAIAPFSFGTLLGTQLILMGWVESKRWVDFFNPDSQSVEWA 180

Query: 181 TPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLA 240
           TPWSRTAENF+N+TGEQGYPGGKFFDPLS AGTI +GVY PDT+KLERLKLAEIKHAR+A
Sbjct: 181 TPWSRTAENFANATGEQGYPGGKFFDPLSFAGTIKDGVYIPDTEKLERLKLAEIKHARIA 240

Query: 241 MLAMLIFYFEAGQGKTPLGALGL 262
           MLAMLIFYFEAGQGKTPLGALGL
Sbjct: 241 MLAMLIFYFEAGQGKTPLGALGL 260

[Close]

BLAST of Spo25138.1 vs. UniProtKB/TrEMBL
Match: I1KUE5_SOYBN (Chlorophyll a-b binding protein, chloroplastic OS=Glycine max GN=GLYMA_08G180000 PE=3 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 2.000e-121
Identity = 215/263 (81.75%), Postives = 238/263 (90.49%), Query Frame = 1


		  
Query: 1   MAAATSATAIVNGFTSPFLSGGKKSSQSLLF--VNSKVGAGVSTTSRKLVVVAAAAAPKK 60
           MAAATS  A++NG  S FLSGG +S Q+LL   +  KVGA   T S + ++V AAAAPKK
Sbjct: 1   MAAATSG-AVLNGLGSSFLSGGNRS-QTLLATAIGGKVGAAAVTVSPRRLIVVAAAAPKK 60

Query: 61  SWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLG 120
           SW+P V+GGGN +DPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAM AVLG
Sbjct: 61  SWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLG 120

Query: 121 IFVGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWA 180
           IFVGQAW+G+PWFEAGADP A+APFSFGTLLGTQL+LMGWVESKRWVDFF+PDSQSVEWA
Sbjct: 121 IFVGQAWSGVPWFEAGADPNAIAPFSFGTLLGTQLILMGWVESKRWVDFFNPDSQSVEWA 180

Query: 181 TPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLA 240
           TPWSRT+ENF+N+TGEQGYPGGKFFDPLSLAGTI +GVY PDT+KLERLKLAEIKHAR+A
Sbjct: 181 TPWSRTSENFANATGEQGYPGGKFFDPLSLAGTIKDGVYIPDTEKLERLKLAEIKHARIA 240

Query: 241 MLAMLIFYFEAGQGKTPLGALGL 262
           MLAMLIFYFEAGQGKTPLGALGL
Sbjct: 241 MLAMLIFYFEAGQGKTPLGALGL 261

[Close]

BLAST of Spo25138.1 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 530.8 bits (1366), Expect = 8.500e-150
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 1


		  
Query: 1   MAAATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSW 60
           MAAATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSW
Sbjct: 1   MAAATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSW 60

Query: 61  IPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIF 120
           IPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIF
Sbjct: 61  IPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIF 120

Query: 121 VGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATP 180
           VGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATP
Sbjct: 121 VGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATP 180

Query: 181 WSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAML 240
           WSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAML
Sbjct: 181 WSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAML 240

Query: 241 AMLIFYFEAGQGKTPLGALGL 262
           AMLIFYFEAGQGKTPLGALGL
Sbjct: 241 AMLIFYFEAGQGKTPLGALGL 261

[Close]

BLAST of Spo25138.1 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 441.4 bits (1134), Expect = 6.800e-123
Identity = 215/257 (83.66%), Postives = 237/257 (92.22%), Query Frame = 1


		  
Query: 5   TSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAV 64
           TSATA++NG +S FL+GGKK+ Q+LL   + V A V TT ++ VV AAA APKKSWIPAV
Sbjct: 4   TSATAVLNGLSSSFLTGGKKT-QALL--GAHVTARV-TTPKRFVVAAAAVAPKKSWIPAV 63

Query: 65  KGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQA 124
           K GGN +DPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAM AVLGIFVGQA
Sbjct: 64  KSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQA 123

Query: 125 WTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRT 184
           W+GIPWFEAGADPGA+APFSFG+LLGTQLLLMGWVESKRWVDFFD DSQS++WATPWS+T
Sbjct: 124 WSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKT 183

Query: 185 AENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLI 244
           AENF+N TGEQGYPGGKFFDPL+LAGT++NGVY PDT+KLERLKLAEIKH+RLAMLAMLI
Sbjct: 184 AENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLI 243

Query: 245 FYFEAGQGKTPLGALGL 262
           FYFEAGQGKTPLGALGL
Sbjct: 244 FYFEAGQGKTPLGALGL 256

[Close]

BLAST of Spo25138.1 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 9.700e-122
Identity = 210/258 (81.40%), Postives = 234/258 (90.70%), Query Frame = 1


		  
Query: 4   ATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPA 63
           AT++ A++NG +S FL+GG KS Q+LL        G + T ++  V+AAAA  KKSWIPA
Sbjct: 2   ATTSAAVLNGLSSSFLTGGNKS-QALLAAPLAARVGGAATPKRFTVLAAAA--KKSWIPA 61

Query: 64  VKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQ 123
           V+GGGN +DPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAM AVLGIFVGQ
Sbjct: 62  VRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQ 121

Query: 124 AWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSR 183
           AW+GIPWFEAGADPGA+APFSFGTLLGTQL+LMGWVESKRWVDFFDPDSQSVEWATPWS+
Sbjct: 122 AWSGIPWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSK 181

Query: 184 TAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAML 243
           TAENF+N TGEQGYPGGKFFDPL+LAGT++NGVY PDT+KLERLK+AEIKHARLAMLAML
Sbjct: 182 TAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAML 241

Query: 244 IFYFEAGQGKTPLGALGL 262
           IFYFEAGQGKTPLGALGL
Sbjct: 242 IFYFEAGQGKTPLGALGL 256

[Close]

BLAST of Spo25138.1 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.200e-32
Identity = 86/212 (40.57%), Postives = 111/212 (52.36%), Query Frame = 1


		  
Query: 44  SRKLVVVAAAAAPKKS-WIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYR 103
           SR + V A AA P +  W P          PEWLDGSLPGDFGFDPLGLG DP  LKW  
Sbjct: 51  SRSVAVSAVAADPDRPLWFPGST------PPEWLDGSLPGDFGFDPLGLGSDPESLKWNA 110

Query: 104 EAELIHGRWAMLAVLGIFVGQAWTGI------PWFEAGADPGAVAPFSFGTLLGTQLLLM 163
           +AEL+H RWAML   GIF+ +  T I       W+ AG            TL   +L+L+
Sbjct: 111 QAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFT---DTTTLFVIELVLI 170

Query: 164 GWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGV 223
           GW E +RW D   P   + +   P      N   +  + GYPGG +FDPL        G 
Sbjct: 171 GWAEGRRWADIIKPGCVNTDPIFP------NNKLTGTDVGYPGGLWFDPL--------GW 230

Query: 224 YNPDTDKLERLKLAEIKHARLAMLAMLIFYFE 249
            +    K++ L+  EIK+ RLAMLA++  +F+
Sbjct: 231 GSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQ 239

[Close]

BLAST of Spo25138.1 vs. ExPASy Swiss-Prot
Match: LHCA6_ARATH (Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis thaliana GN=LHCA6 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.500e-32
Identity = 83/180 (46.11%), Postives = 105/180 (58.33%), Query Frame = 1


		  
Query: 73  PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFE 132
           PEWLDGSLPGDFGFDPLGLG DP  LKW+ +AELIH RWAMLAV GI + +    + + E
Sbjct: 75  PEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIE 134

Query: 133 --AGADPGAVAPFSFG-TLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFS 192
             +  D G+   F+   TL   Q++LMGW E +RW D   P S  +E   P      +  
Sbjct: 135 NFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYP------HKV 194

Query: 193 NSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEA 250
           N   + GYPGG +FD +        G  +P+   + R K  EIK+ RLAMLA L F F+A
Sbjct: 195 NPKPDVGYPGGLWFDFMMW------GRGSPEPVMVLRTK--EIKNGRLAMLAFLGFCFQA 240

[Close]

BLAST of Spo25138.1 vs. TAIR (Arabidopsis)
Match: AT1G15820.1 (light harvesting complex photosystem II subunit 6)

HSP 1 Score: 422.2 bits (1084), Expect = 2.400e-118
Identity = 207/262 (79.01%), Postives = 229/262 (87.40%), Query Frame = 1


		  
Query: 1   MAAATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAA-PKKS 60
           MA A S  A+++G  S FL+GGK+ + +L    S VG G     RK ++VAAAAA PKKS
Sbjct: 1   MAMAVSG-AVLSGLGSSFLTGGKRGATALA---SGVGTGAQRVGRKTLIVAAAAAQPKKS 60

Query: 61  WIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGI 120
           WIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAM AVLGI
Sbjct: 61  WIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGI 120

Query: 121 FVGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWAT 180
           FVGQAW+G+ WFEAGA P A+APFSFG+LLGTQLLLMGWVESKRWVDFF+PDSQSVEWAT
Sbjct: 121 FVGQAWSGVAWFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWAT 180

Query: 181 PWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAM 240
           PWS+TAENF+N TG+QGYPGG+FFDPL LAG   +GVY PD +KLERLKLAEIKH+RLAM
Sbjct: 181 PWSKTAENFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAM 240

Query: 241 LAMLIFYFEAGQGKTPLGALGL 262
           +AMLIFYFEAGQGKTPLGALGL
Sbjct: 241 VAMLIFYFEAGQGKTPLGALGL 258

[Close]

BLAST of Spo25138.1 vs. TAIR (Arabidopsis)
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6)

HSP 1 Score: 139.4 bits (350), Expect = 3.100e-33
Identity = 83/180 (46.11%), Postives = 105/180 (58.33%), Query Frame = 1


		  
Query: 73  PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFE 132
           PEWLDGSLPGDFGFDPLGLG DP  LKW+ +AELIH RWAMLAV GI + +    + + E
Sbjct: 75  PEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIE 134

Query: 133 --AGADPGAVAPFSFG-TLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFS 192
             +  D G+   F+   TL   Q++LMGW E +RW D   P S  +E   P      +  
Sbjct: 135 NFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYP------HKV 194

Query: 193 NSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEA 250
           N   + GYPGG +FD +        G  +P+   + R K  EIK+ RLAMLA L F F+A
Sbjct: 195 NPKPDVGYPGGLWFDFMMW------GRGSPEPVMVLRTK--EIKNGRLAMLAFLGFCFQA 240

[Close]

BLAST of Spo25138.1 vs. TAIR (Arabidopsis)
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2)

HSP 1 Score: 139.0 bits (349), Expect = 4.000e-33
Identity = 93/254 (36.61%), Postives = 126/254 (49.61%), Query Frame = 1


		  
Query: 1   MAAATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSW 60
           MA++  A++ +   +SP   GGKK     L +  K+     +     V   AA   +  W
Sbjct: 1   MASSLCASSAIAAISSPSFLGGKK-----LRLKKKLTVPAVSRPDASVRAVAADPDRPIW 60

Query: 61  IPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIF 120
            P          PEWLDGSLPGDFGFDPLGL  DP  LKW  +AE++H RWAML   GIF
Sbjct: 61  FPGST------PPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIF 120

Query: 121 VGQAWTGI------PWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQS 180
           + +  T I       W+ AG            TL   +L+L+GW E +RW D   P S +
Sbjct: 121 IPEFLTKIGILNTPSWYTAGEQEYFT---DKTTLFVVELILIGWAEGRRWADIIKPGSVN 180

Query: 181 VEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKH 240
            +   P      N   +  + GYPGG +FDPL        G  +    KL+ L+  EIK+
Sbjct: 181 TDPVFP------NNKLTGTDVGYPGGLWFDPL--------GWGSGSPAKLKELRTKEIKN 226

Query: 241 ARLAMLAMLIFYFE 249
            RLAMLA++  +F+
Sbjct: 241 GRLAMLAVMGAWFQ 226

[Close]

BLAST of Spo25138.1 vs. TAIR (Arabidopsis)
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5)

HSP 1 Score: 135.6 bits (340), Expect = 4.500e-32
Identity = 98/252 (38.89%), Postives = 131/252 (51.98%), Query Frame = 1


		  
Query: 7   ATAIVNGFTSPFLSGGKKSSQSLLFVNSKV---GAGVSTTSRKLVVVAAAAAPKKSWIPA 66
           A  +  G T  FL   + +S  +    S V   G G++ T          A  + +W+P 
Sbjct: 2   AVVLRGGITGGFLHHRRDASSVITRRISSVKAAGGGINPT---------VAVERATWLPG 61

Query: 67  VKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQ 126
           +        P +LDG+L GD+GFDPLGLG+DP  LKWY +AEL+H R+AML V GI    
Sbjct: 62  LN------PPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTD 121

Query: 127 --AWTGI----PWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEW 186
               TGI     W+EAGA     A  S  TL+  Q LLMG+ E+KR++DF  P SQ+ E 
Sbjct: 122 LLRTTGIRNLPVWYEAGAVKFDFA--STKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEG 181

Query: 187 ATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARL 246
           +  +   A   +    E GYPGG   +PL LA  + N             KL EIK+ RL
Sbjct: 182 SFFFGLEA---ALEGLEPGYPGGPLLNPLGLAKDVQNA---------HDWKLKEIKNGRL 224

Query: 247 AMLAMLIFYFEA 250
           AM+AML F+ +A
Sbjct: 242 AMMAMLGFFVQA 224

[Close]

BLAST of Spo25138.1 vs. TAIR (Arabidopsis)
Match: AT5G01530.1 (light harvesting complex photosystem II)

HSP 1 Score: 118.6 bits (296), Expect = 5.600e-27
Identity = 95/307 (30.94%), Postives = 132/307 (43.00%), Query Frame = 1


		  
Query: 2   AAATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWI 61
           AAA +A++I+    +P +  G     ++       G G    + K          +  W 
Sbjct: 6   AAAAAASSIMGTRVAPGIHPGSGRFTAVF------GFGKKKAAPKKSAKKTVTTDRPLWY 65

Query: 62  PAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKW--------------------- 121
           P        + P+WLDGSL GD+GFDP GLGK   +L++                     
Sbjct: 66  PGA------ISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTR 125

Query: 122 ----------------------YREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAG---- 181
                                 +RE ELIHGRWAMLA LG    +  TG+ W +AG    
Sbjct: 126 TEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVEL 185

Query: 182 ----ADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSN 241
               +  G   PFS  TL+  ++L++G++E +R                       N   
Sbjct: 186 VDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-----------------------NAEL 245

Query: 242 STGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFE-A 257
            + ++ YPGGKFFDPL LA          D +K  +L+LAEIKHARLAM+A L F  + A
Sbjct: 246 DSEKRLYPGGKFFDPLGLAA---------DPEKTAQLQLAEIKHARLAMVAFLGFAVQAA 268

The following BLAST results are available for this feature:

BLAST of Spo25138.1 vs. NCBI nr
BLAST of Spo25138.1 vs. UniProtKB/TrEMBL
BLAST of Spo25138.1 vs. ExPASy Swiss-Prot
BLAST of Spo25138.1 vs. TAIR (Arabidopsis)

BLAST of Spo25138.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|543939\|sp\|P36494.1\|CB4_SPIOL	1.4e-147	100.	RecName: Full=Chlorophyll a-b ...	[more]
gi\|731374120\|ref\|XP_010666865.1\|	2.2e-134	90.3	PREDICTED: chlorophyll a-b bin...	[more]
gi\|502077136\|ref\|XP_004485563.1\|	2.2e-121	81.6	PREDICTED: chlorophyll a-b bin...	[more]
gi\|720042292\|ref\|XP_010269191.1\|	2.2e-121	82.4	PREDICTED: chlorophyll a-b bin...	[more]
gi\|734405712\|gb\|KHN33514.1\|	2.2e-121	82.5	Chlorophyll a-b binding protei...	[more]

BLAST of Spo25138.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RAF2_SPIOL	9.4e-148	100.	Chlorophyll a-b binding protei...	[more]
A0A0J8B7L7_BETVU	1.6e-134	90.3	Chlorophyll a-b binding protei...	[more]
K7M9Q3_SOYBN	1.5e-121	82.5	Chlorophyll a-b binding protei...	[more]
A0A0B2RMF5_GLYSO	1.5e-121	82.5	Chlorophyll a-b binding protei...	[more]
I1KUE5_SOYBN	2.0e-121	81.7	Chlorophyll a-b binding protei...	[more]

BLAST of Spo25138.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
CB4_SPIOL	8.5e-150	100.	Chlorophyll a-b binding protei...	[more]
CB4B_SOLLC	6.8e-123	83.6	Chlorophyll a-b binding protei...	[more]
CB4A_SOLLC	9.7e-122	81.4	Chlorophyll a-b binding protei...	[more]
CB12_PETHY	3.2e-32	40.5	Chlorophyll a-b binding protei...	[more]
LHCA6_ARATH	5.5e-32	46.1	Photosystem I chlorophyll a/b-...	[more]

BLAST of Spo25138.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT1G15820.1	2.4e-118	79.0	light harvesting complex photo...	[more]
AT1G19150.1	3.1e-33	46.1	photosystem I light harvesting...	[more]
AT3G61470.1	4.0e-33	36.6	photosystem I light harvesting...	[more]
AT1G45474.1	4.5e-32	38.8	photosystem I light harvesting...	[more]
AT5G01530.1	5.6e-27	30.9	light harvesting complex photo...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..259 score: 5.0E
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 73..249 score: 1.6
IPR023329	Chlorophyll a/b binding protein domain	GENE3D	1.10.3460.10		coord: 73..256 score: 6.0
IPR023329	Chlorophyll a/b binding protein domain	unknown	SSF103511	Chlorophyll a-b binding protein	coord: 69..261 score: 1.96
None	No IPR available	PANTHER	PTHR21649:SF2	CHLOROPHYLL A-B BINDING PROTEIN	coord: 1..259 score: 5.0E

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006816	calcium ion transport
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0009735	response to cytokinin
biological_process	GO:0015979	photosynthesis
biological_process	GO:0030003	cellular cation homeostasis
biological_process	GO:0070838	divalent metal ion transport
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0009744	response to sucrose
biological_process	GO:0010114	response to red light
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0010218	response to far red light
biological_process	GO:0009637	response to blue light
biological_process	GO:0010155	regulation of proton transport
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0007030	Golgi organization
biological_process	GO:0010196	nonphotochemical quenching
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009651	response to salt stress
biological_process	GO:0080167	response to karrikin
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0009853	photorespiration
biological_process	GO:0006098	pentose-phosphate shunt
cellular_component	GO:0031977	thylakoid lumen
cellular_component	GO:0016020	membrane
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0048046	apoplast
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0030076	light-harvesting complex
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0030093	chloroplast photosystem I
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009783	photosystem II antenna complex
cellular_component	GO:0010287	plastoglobule
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0005516	calmodulin binding
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0005198	structural molecule activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo10927	0.88	Barchart \| Table
Spo10529	0.82	Barchart \| Table
Spo10537	0.82	Barchart \| Table
Spo15812	0.79	Barchart \| Table
Spo19731	0.77	Barchart \| Table
Spo17046	0.74	Barchart \| Table
Spo02453	0.73	Barchart \| Table
Spo20441	0.70	Barchart \| Table
Spo13700	0.68	Barchart \| Table
Spo07501	0.67	Barchart \| Table
Spo18502	0.66	Barchart \| Table