Spo25172 (gene) | SpinachBase

Overview


Name	Spo25172
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Pre-mRNA-splicing factor SLU7-A
Location	chr6 : 23197871 .. 23198709 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATTGCATCAGGTATGATTTCAACTGGAATTCGCAATTCGACACTTTTTAGGGTTTTGGTATATAGCTTTTAGATTTGATTGGATGAATTGCTTAATTTAATTCGAATTGTTCGTGTAAATGGGTTGAATTTCTTGATTTAATTTGAATTTTTCGTATATTCAATTGCGTGTAATCCCTAATTCATGATTGTTGAGTTTAGATATCTTGTTAATTTTACTCGAAATTTGATTTTTTGTTTCGCCGGTAAAAAAAATATCTTGTTAAACTGGAGCTGTATATGAATTGTTCGTGTAATTAGAGGTTTTCGAAACACTGAACGATTATTGCGCTATTGGAGATGTTTCTAAATTGATTATGGGGAAATTTGCAGTGGCGTTTAAGTCTAGGGAAGACCATAGGAAGCAGTTTGAATTAGAGGAAGCTCGTAAAGCTGGGCTTGCGCCAGCTGAGGTTGATGAAGATGGAAAAGAGATTAATCCTCACATTCCGCAGTATATGTCTTCTTCTCCTTGGTATCTCAATTCGAATAAGCCGGTGAGTTTCCGATACTTTTATAATCAAGTTTCTTTATGTTCTTTGATTTTGGTGGTGTTGATAGAACATTAAGAACTGACCATCCAAATTTTTGGTGGATCTTCAGAGTTTGAAGCATCAAAGGAAGTGGAAATCGGATCCGAATTACACCAAATCGTGGTATAACAGAGGTGAAAAAGGTTTTCAGGCATCAAAGAGATTGATGTTCCAGACTATGCACAACCGAGTTCTAAGTGTCTTTTATTGGTGGAAAGAAAATAGACCGGTGGTGCTCTATGTGTCTTTCAATCCCTCCTAA

mRNA sequence

ATGGCGATTGCATCAGTGGCGTTTAAGTCTAGGGAAGACCATAGGAAGCAGTTTGAATTAGAGGAAGCTCGTAAAGCTGGGCTTGCGCCAGCTGAGGTTGATGAAGATGGAAAAGAGATTAATCCTCACATTCCGCAGTATATGTCTTCTTCTCCTTGGTATCTCAATTCGAATAAGCCGAGTTTGAAGCATCAAAGGAAGTGGAAATCGGATCCGAATTACACCAAATCGTGGTATAACAGAGGTGAAAAAGGTTTTCAGGCATCAAAGAGATTGATGTTCCAGACTATGCACAACCGAGTTCTAAGTGTCTTTTATTGGTGGAAAGAAAATAGACCGGTGGTGCTCTATGTGTCTTTCAATCCCTCCTAA

Coding sequence (CDS)

ATGGCGATTGCATCAGTGGCGTTTAAGTCTAGGGAAGACCATAGGAAGCAGTTTGAATTAGAGGAAGCTCGTAAAGCTGGGCTTGCGCCAGCTGAGGTTGATGAAGATGGAAAAGAGATTAATCCTCACATTCCGCAGTATATGTCTTCTTCTCCTTGGTATCTCAATTCGAATAAGCCGAGTTTGAAGCATCAAAGGAAGTGGAAATCGGATCCGAATTACACCAAATCGTGGTATAACAGAGGTGAAAAAGGTTTTCAGGCATCAAAGAGATTGATGTTCCAGACTATGCACAACCGAGTTCTAAGTGTCTTTTATTGGTGGAAAGAAAATAGACCGGTGGTGCTCTATGTGTCTTTCAATCCCTCCTAA

Protein sequence

MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSSPWYLNSNKPSLKHQRKWKSDPNYTKSWYNRGEKGFQASKRLMFQTMHNRVLSVFYWWKENRPVVLYVSFNPS

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo25172.1	Spo25172.1	mRNA

Homology

[Close]

BLAST of Spo25172.1 vs. NCBI nr
Match: gi|731336505|ref|XP_010679298.1| (PREDICTED: pre-mRNA-splicing factor SLU7-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 180.3 bits (456), Expect = 2.100e-42
Identity = 86/90 (95.56%), Postives = 87/90 (96.67%), Query Frame = 1


		  
Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSSPWYLNSNKP 60
          MA ASVAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSS+PWYLNSNKP
Sbjct: 1  MATASVAFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQRKWKSDPNYTKSWYNRGEKGFQA K
Sbjct: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQAEK 90

[Close]

BLAST of Spo25172.1 vs. NCBI nr
Match: gi|902186634|gb|KNA10745.1| (hypothetical protein SOVF_141540, partial [Spinacia oleracea])

HSP 1 Score: 174.1 bits (440), Expect = 1.500e-40
Identity = 83/84 (98.81%), Postives = 84/84 (100.00%), Query Frame = 1


		  
Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSSPWYLNSNKP 60
          MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSS+PWYLNSNKP
Sbjct: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEK 85
          SLKHQRKWKSDPNYTKSWYNRGEK
Sbjct: 61 SLKHQRKWKSDPNYTKSWYNRGEK 84

[Close]

BLAST of Spo25172.1 vs. NCBI nr
Match: gi|902228730|gb|KNA21247.1| (hypothetical protein SOVF_045230 [Spinacia oleracea])

HSP 1 Score: 172.6 bits (436), Expect = 4.400e-40
Identity = 82/87 (94.25%), Postives = 84/87 (96.55%), Query Frame = 1


		  
Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSSPWYLNSNKP 60
          MA ASVAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSS+PWYLNSNKP
Sbjct: 1  MATASVAFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQ 88
          SLKHQRKWKSDPNYTKSWYNRGEKG +
Sbjct: 61 SLKHQRKWKSDPNYTKSWYNRGEKGIK 87

[Close]

BLAST of Spo25172.1 vs. NCBI nr
Match: gi|729447974|ref|XP_010522579.1| (PREDICTED: pre-mRNA-splicing factor SLU7-A [Tarenaya hassleriana])

HSP 1 Score: 169.9 bits (429), Expect = 2.900e-39
Identity = 82/90 (91.11%), Postives = 84/90 (93.33%), Query Frame = 1


		  
Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSSPWYLNSNKP 60
          MA ASVAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSS+PWYLNS KP
Sbjct: 1  MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQRKWKSDPNYTKSWY+RG K FQA K
Sbjct: 61 SLKHQRKWKSDPNYTKSWYDRGAKIFQADK 90

[Close]

BLAST of Spo25172.1 vs. NCBI nr
Match: gi|297841113|ref|XP_002888438.1| (Pre-mRNA-splicing factor SLU7-A [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 169.9 bits (429), Expect = 2.900e-39
Identity = 82/90 (91.11%), Postives = 84/90 (93.33%), Query Frame = 1


		  
Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSSPWYLNSNKP 60
          MA ASVAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSS+PWYLNS KP
Sbjct: 1  MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQRKWKSDPNYTKSWY+RG K FQA K
Sbjct: 61 SLKHQRKWKSDPNYTKSWYDRGAKIFQAEK 90

[Close]

BLAST of Spo25172.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CCG5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g121130 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.500e-42
Identity = 86/90 (95.56%), Postives = 87/90 (96.67%), Query Frame = 1


		  
Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSSPWYLNSNKP 60
          MA ASVAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSS+PWYLNSNKP
Sbjct: 1  MATASVAFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQRKWKSDPNYTKSWYNRGEKGFQA K
Sbjct: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQAEK 90

[Close]

BLAST of Spo25172.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QU18_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_141540 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.100e-40
Identity = 83/84 (98.81%), Postives = 84/84 (100.00%), Query Frame = 1


		  
Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSSPWYLNSNKP 60
          MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSS+PWYLNSNKP
Sbjct: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEK 85
          SLKHQRKWKSDPNYTKSWYNRGEK
Sbjct: 61 SLKHQRKWKSDPNYTKSWYNRGEK 84

[Close]

BLAST of Spo25172.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQY9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_045230 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.100e-40
Identity = 82/87 (94.25%), Postives = 84/87 (96.55%), Query Frame = 1


		  
Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSSPWYLNSNKP 60
          MA ASVAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSS+PWYLNSNKP
Sbjct: 1  MATASVAFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQ 88
          SLKHQRKWKSDPNYTKSWYNRGEKG +
Sbjct: 61 SLKHQRKWKSDPNYTKSWYNRGEKGIK 87

[Close]

BLAST of Spo25172.1 vs. UniProtKB/TrEMBL
Match: D7KSF4_ARALL (Pre-mRNA-splicing factor SLU7-A OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_475672 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.000e-39
Identity = 82/90 (91.11%), Postives = 84/90 (93.33%), Query Frame = 1


		  
Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSSPWYLNSNKP 60
          MA ASVAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSS+PWYLNS KP
Sbjct: 1  MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQRKWKSDPNYTKSWY+RG K FQA K
Sbjct: 61 SLKHQRKWKSDPNYTKSWYDRGAKIFQAEK 90

[Close]

BLAST of Spo25172.1 vs. UniProtKB/TrEMBL
Match: R0IAA1_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10020118mg PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.000e-39
Identity = 82/90 (91.11%), Postives = 84/90 (93.33%), Query Frame = 1


		  
Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSSPWYLNSNKP 60
          MA ASVAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSS+PWYLNS KP
Sbjct: 1  MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQRKWKSDPNYTKSWY+RG K FQA K
Sbjct: 61 SLKHQRKWKSDPNYTKSWYDRGAKIFQAEK 90

[Close]

BLAST of Spo25172.1 vs. ExPASy Swiss-Prot
Match: SLU7A_ARATH (Pre-mRNA-splicing factor SLU7-A OS=Arabidopsis thaliana GN=At1g65660 PE=1 SV=2)

HSP 1 Score: 169.9 bits (429), Expect = 1.800e-41
Identity = 82/90 (91.11%), Postives = 84/90 (93.33%), Query Frame = 1


		  
Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSSPWYLNSNKP 60
          MA ASVAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSS+PWYLNS KP
Sbjct: 1  MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQRKWKSDPNYTKSWY+RG K FQA K
Sbjct: 61 SLKHQRKWKSDPNYTKSWYDRGAKIFQAEK 90

[Close]

BLAST of Spo25172.1 vs. ExPASy Swiss-Prot
Match: SLU7_ORYSJ (Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. japonica GN=Os08g0127700 PE=2 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.000e-40
Identity = 79/90 (87.78%), Postives = 85/90 (94.44%), Query Frame = 1


		  
Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSSPWYLNSNKP 60
          MA ASV+FKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSS+PWYLN++KP
Sbjct: 1  MATASVSFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNADKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQR WKSDPNYTKSWY+RG K FQA+K
Sbjct: 61 SLKHQRNWKSDPNYTKSWYDRGAKLFQANK 90

[Close]

BLAST of Spo25172.1 vs. ExPASy Swiss-Prot
Match: SLU7_ORYSI (Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. indica GN=OsI_27673 PE=3 SV=2)

HSP 1 Score: 166.4 bits (420), Expect = 2.000e-40
Identity = 79/90 (87.78%), Postives = 85/90 (94.44%), Query Frame = 1


		  
Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSSPWYLNSNKP 60
          MA ASV+FKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSS+PWYLN++KP
Sbjct: 1  MATASVSFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNADKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQR WKSDPNYTKSWY+RG K FQA+K
Sbjct: 61 SLKHQRNWKSDPNYTKSWYDRGAKLFQANK 90

[Close]

BLAST of Spo25172.1 vs. ExPASy Swiss-Prot
Match: SLU7B_ARATH (Pre-mRNA-splicing factor SLU7-B OS=Arabidopsis thaliana GN=At4g37120 PE=2 SV=3)

HSP 1 Score: 142.1 bits (357), Expect = 4.000e-33
Identity = 67/90 (74.44%), Postives = 77/90 (85.56%), Query Frame = 1


		  
Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSSPWYLNSNKP 60
          MA ASVAFKSREDHRK+ ELEEARKAGLAPAEVDEDGKEINPHIP+YMS +PWYL S +P
Sbjct: 1  MATASVAFKSREDHRKKLELEEARKAGLAPAEVDEDGKEINPHIPEYMSKAPWYLKSEQP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQ+ WK +P   K WY+RG+K +QA +
Sbjct: 61 SLKHQKNWKIEPEPKKIWYDRGKKIYQAEQ 90

[Close]

BLAST of Spo25172.1 vs. ExPASy Swiss-Prot
Match: SLU7_DICDI (Pre-mRNA-splicing factor slu7 OS=Dictyostelium discoideum GN=slu7 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.500e-19
Identity = 47/83 (56.63%), Postives = 64/83 (77.11%), Query Frame = 1


		  
Query: 9  KSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSSPWYLNSNKPSLKHQRKW 68
          K+R++++K+ EL+EARKAG APAE+DE+GKEINPHIP+Y+  +PWYLN+NKPSLKHQR  
Sbjct: 9  KTRDEYKKEKELDEARKAGNAPAELDEEGKEINPHIPEYILKAPWYLNANKPSLKHQR-G 68

Query: 69 KSDPNYTKSWYNRGEKGFQASKR 92
           +     K WY RG    +A+ +
Sbjct: 69 VTKKEMDKGWYLRGATTGEAATK 90

[Close]

BLAST of Spo25172.1 vs. TAIR (Arabidopsis)
Match: AT1G65660.1 (Pre-mRNA splicing Prp18-interacting factor)

HSP 1 Score: 169.9 bits (429), Expect = 1.000e-42
Identity = 82/90 (91.11%), Postives = 84/90 (93.33%), Query Frame = 1


		  
Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSSPWYLNSNKP 60
          MA ASVAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSS+PWYLNS KP
Sbjct: 1  MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQRKWKSDPNYTKSWY+RG K FQA K
Sbjct: 61 SLKHQRKWKSDPNYTKSWYDRGAKIFQAEK 90

[Close]

BLAST of Spo25172.1 vs. TAIR (Arabidopsis)
Match: AT4G37120.1 (Pre-mRNA splicing Prp18-interacting factor)

HSP 1 Score: 142.1 bits (357), Expect = 2.200e-34
Identity = 67/90 (74.44%), Postives = 77/90 (85.56%), Query Frame = 1


		  
Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSSPWYLNSNKP 60
          MA ASVAFKSREDHRK+ ELEEARKAGLAPAEVDEDGKEINPHIP+YMS +PWYL S +P
Sbjct: 1  MATASVAFKSREDHRKKLELEEARKAGLAPAEVDEDGKEINPHIPEYMSKAPWYLKSEQP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQ+ WK +P   K WY+RG+K +QA +
Sbjct: 61 SLKHQKNWKIEPEPKKIWYDRGKKIYQAEQ 90

[Close]

BLAST of Spo25172.1 vs. TAIR (Arabidopsis)
Match: AT3G45950.1 (Pre-mRNA splicing Prp18-interacting factor)

HSP 1 Score: 124.4 bits (311), Expect = 4.900e-29
Identity = 63/90 (70.00%), Postives = 72/90 (80.00%), Query Frame = 1


		  
Query: 1  MAIASVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSSPWYLNSNKP 60
          MA ASVAFKSR+DHRKQ ELEEARKAGLAPAEVDE GKEIN HIP+Y++  P Y  S KP
Sbjct: 1  MATASVAFKSRKDHRKQKELEEARKAGLAPAEVDEGGKEINLHIPKYLTIPPLYAKSEKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQ+ WK+ P  T S+Y+RG K +QA K
Sbjct: 61 SLKHQKNWKTKPVSTTSYYDRGAKTYQAEK 90

The following BLAST results are available for this feature:

BLAST of Spo25172.1 vs. NCBI nr
BLAST of Spo25172.1 vs. UniProtKB/TrEMBL
BLAST of Spo25172.1 vs. ExPASy Swiss-Prot
BLAST of Spo25172.1 vs. TAIR (Arabidopsis)

BLAST of Spo25172.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|731336505\|ref\|XP_010679298.1\|	2.1e-42	95.5	PREDICTED: pre-mRNA-splicing f...	[more]
gi\|902186634\|gb\|KNA10745.1\|	1.5e-40	98.8	hypothetical protein SOVF_1415...	[more]
gi\|902228730\|gb\|KNA21247.1\|	4.4e-40	94.2	hypothetical protein SOVF_0452...	[more]
gi\|729447974\|ref\|XP_010522579.1\|	2.9e-39	91.1	PREDICTED: pre-mRNA-splicing f...	[more]
gi\|297841113\|ref\|XP_002888438.1\|	2.9e-39	91.1	Pre-mRNA-splicing factor SLU7-...	[more]

BLAST of Spo25172.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0J8CCG5_BETVU	1.5e-42	95.5	Uncharacterized protein OS=Bet...	[more]
A0A0K9QU18_SPIOL	1.1e-40	98.8	Uncharacterized protein (Fragm...	[more]
A0A0K9RQY9_SPIOL	3.1e-40	94.2	Uncharacterized protein OS=Spi...	[more]
D7KSF4_ARALL	2.0e-39	91.1	Pre-mRNA-splicing factor SLU7-...	[more]
R0IAA1_9BRAS	2.0e-39	91.1	Uncharacterized protein OS=Cap...	[more]

BLAST of Spo25172.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
SLU7A_ARATH	1.8e-41	91.1	Pre-mRNA-splicing factor SLU7-...	[more]
SLU7_ORYSJ	2.0e-40	87.7	Pre-mRNA-splicing factor SLU7 ...	[more]
SLU7_ORYSI	2.0e-40	87.7	Pre-mRNA-splicing factor SLU7 ...	[more]
SLU7B_ARATH	4.0e-33	74.4	Pre-mRNA-splicing factor SLU7-...	[more]
SLU7_DICDI	1.5e-19	56.6	Pre-mRNA-splicing factor slu7 ...	[more]

BLAST of Spo25172.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3


Match Name	E-value	Identity	Description
AT1G65660.1	1.0e-42	91.1	Pre-mRNA splicing Prp18-intera...	[more]
AT4G37120.1	2.2e-34	74.4	Pre-mRNA splicing Prp18-intera...	[more]
AT3G45950.1	4.9e-29	70.0	Pre-mRNA splicing Prp18-intera...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12942	STEP II SPLICING FACTOR SLU7	coord: 1..90 score: 5.9
None	No IPR available	PANTHER	PTHR12942:SF2	PRE-MRNA-SPLICING FACTOR SLU7	coord: 1..90 score: 5.9

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051276	chromosome organization
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0008284	positive regulation of cell proliferation
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0043687	post-translational protein modification
biological_process	GO:0035196	production of miRNAs involved in gene silencing by miRNA
biological_process	GO:0030422	production of siRNA involved in RNA interference
biological_process	GO:0009410	response to xenobiotic stimulus
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0000386	second spliceosomal transesterification activity
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0008270	zinc ion binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo11802	0.66	Barchart \| Table