Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATTCCCTAGATGTGTTATGTGTATATCACCTATTCCTACATAAAAACATTCACACATTCTTTGGTTAGTCAACAATTCATTTAACCAAGACAGTGGACCCCACAAAAACCCTCCCTAAAATATCAGTCCTCCTACTACCCTGATCCAGTGATCCCCCCTCCTCTGTTTTCAGCCTTTAAAAGCAGAACAAACACATCCCCTCATCCCTTCCTTAGAATTGAAACTTCTTTCCTCCCTTGTTCAACAAAAAACACTAAGCTATACTTGTAGTATTTGATATTTTTCTCTCTAAAAAAAATGCCAATAATAAACATAAAAAATATCAAAGGCATAGATTTCTCCTGTGCCTCACCAGCATCAACAGCCATATGTTCTAGTACAGACCAAAATTTCATGGTTAAAAACACCACCAAATCCCTTAACCGCTTAAATTCCTACTTAAATGACCATTACAAAAATACCCTTAATCAGCATCAATCATCTTCTCCAAGAGCACCTTGCATCTCTGAACTACCCTTCACTCCTAGACTCTCATCCTCCTTCCGCGAAAAAACCCGAAAAAAATCTCCTTCTCCCTCTATCGTCAAACACAGTGATCTCACTCCTAGAAGAAAAAGCACGGCCGATATCGCCGATGTTCGACGTCGGTACTACGACAAATGCAGTAACAACAGTAGCATTCTGAGTCCTCCTCATAGTCATTCCTCTAGGTACCTTTTAGGTGAGTCTAAACTTCTGGATTCCCTTTCTGAGTCTCATCAAAATGTTACTAATTATAGAAAGAGTAGTAGTGATGCTCTGCCGTTGGTTCCTAGTACTCCTCTACTTGTTAGCAGAGAAGCTCATGAAACCAAGAGTTTTGGATCATTCTTGGATGTTCAAAAAGGAAACAAGTCATTAACGATTGTTAATCCTAGTGATCAAAGACTGATTAAGTCGAGTAAATATGATTATGATGGTCATAATCAGAGGCACAAGAGTATGGGTTATGACACTAATGCCAGAAATGATTCTCTTGTTCTTAAGAAATCGTCGTCTTCTGCTGCTCGATCTCGTGACCAGGTTTTTATCTTTATCTTTATCTTTAACTTATCTTAGTTTTTATTTAATTAATTAACTGATTAGATTAATTTAAGCTATATAGATTATATGAGTATATGGTTAGTATTTCGAGTTATGGCATATGTTAGTCATTATTTTTAATTTAAGTTACATGAAAATTGATGATTTTGTTGTCTTTTACTATCCTTGTTGAAATAATTGTAAGTGACTGTGAATAATAATATGCAGGTTGTGGTACTGAGGGTATCATTGCATTGCAAAGGTTGTGAAGGCAAGCTTAGGAAACATCTCTCCAAAATGGAAGGTCAGTCCAAATTTCTTCCTTCTCTAGTAGGAAGTAGGAAGTAGGAAGTAGGAAGTAGGAACTAGCTGGACAACTAATTAGCCCGCCACTAGCGAGTTACTCCATTCGTCACTTAATACTCGCACTGTTTTAACTGGAATCGCTTGTCAATGCACATCTTTGACCATCAATATCTTTAACTACATATTATAAAAACTTATAAAAATATTAATATTTTGAAAATATATATTAAGATGAACCCAACGATATATTATATAATAACATTTGTTTTCATATACTAGAAATAAAATAGGGTCAAAGTGAACTATGTGAACAGTGCAAAAAGTCAAAACGGTGCGAGTAGTAAGGGACAGAGGGAGTAGTAGGAGCGCGGGTTTTTAAACTCTTTCCTCCAAAGTATTACTCTTTCTGTTCCTAAAGACTTGCAAAAGTTTGACTTTTATACATTAACATTAGACCAATTTTTATTTTACTAATATATAAAAATCAAATGTTATTGTGGTATATGTTGTTGGATTAGTTTTAATATACATTTTTCAATTTTTACTAATATGTAATTGTACATAATTACGATCAAACTAGTATATTGGCAAGTGTGTCAGCCAAACTGTTACAAGTATTCAGGAGGAGAAGGAGTATAAATTATGTTGTTTTTGAACTCTTTCCTCCAAAATGTTATCAAGTAGAGTTTGGCAATACGGGGTAGTATAAAAAAAAGTGCGTAATATAAACATCGATTTTGCAATAGTTCCTCATTTTAGGCTAATATGTCTTAAAATTAAAAGGCGTTGATACTAAGATTTTGGCGTATTTTATGCAGGAGTGACATCATTTTCCATAGATTTGGAAACAAAAAAAGTGACGGTGATAGGAAATGTGACTCCATTGAGTGTATTAACAAGTATTTCAAGGGTAAAGAACGCCCAATTCTGGCCATCAGCAGCATCAGCCTCGCCATCATCGTCCTCTTCTTCTTCTTCAACTTCTTCGACAATCGATTTCAATTAATTTTATTATATGTTCATGGAATTTGCTTCCAATGTCATCAACTTAATGTGAATTAATTAAACTAAGGAGTACTAGGTTGAGATGGTTTCTTATTACGTTAAGTTTGTCAAGTTGTATAATCATTCCTGTTTTTTATCCTCAAAAAATTGCTTTATTAATTTCCTACTTTTTTTTGTGGTATACTTCGTATATTATATAGACCATAGACCGATAATACAATGTATCGTAAATTCCAATTTAGCAATTTCAAAAGTTAACGTGTTGGCTATATCGTTTACAAATACTACCTATCTATGAAGTACGATTAAAGAATTAATAAGAACTATGCAAATTAA AATTCCCTAGATGTGTTATGTGTATATCACCTATTCCTACATAAAAACATTCACACATTCTTTGGTTAGTCAACAATTCATTTAACCAAGACAGTGGACCCCACAAAAACCCTCCCTAAAATATCAGTCCTCCTACTACCCTGATCCAGTGATCCCCCCTCCTCTGTTTTCAGCCTTTAAAAGCAGAACAAACACATCCCCTCATCCCTTCCTTAGAATTGAAACTTCTTTCCTCCCTTGTTCAACAAAAAACACTAAGCTATACTTGTAGTATTTGATATTTTTCTCTCTAAAAAAAATGCCAATAATAAACATAAAAAATATCAAAGGCATAGATTTCTCCTGTGCCTCACCAGCATCAACAGCCATATGTTCTAGTACAGACCAAAATTTCATGGTTAAAAACACCACCAAATCCCTTAACCGCTTAAATTCCTACTTAAATGACCATTACAAAAATACCCTTAATCAGCATCAATCATCTTCTCCAAGAGCACCTTGCATCTCTGAACTACCCTTCACTCCTAGACTCTCATCCTCCTTCCGCGAAAAAACCCGAAAAAAATCTCCTTCTCCCTCTATCGTCAAACACAGTGATCTCACTCCTAGAAGAAAAAGCACGGCCGATATCGCCGATGTTCGACGTCGGTACTACGACAAATGCAGTAACAACAGTAGCATTCTGAGTCCTCCTCATAGTCATTCCTCTAGGTACCTTTTAGGTGAGTCTAAACTTCTGGATTCCCTTTCTGAGTCTCATCAAAATGTTACTAATTATAGAAAGAGTAGTAGTGATGCTCTGCCGTTGGTTCCTAGTACTCCTCTACTTGTTAGCAGAGAAGCTCATGAAACCAAGAGTTTTGGATCATTCTTGGATGTTCAAAAAGGAAACAAGTCATTAACGATTGTTAATCCTAGTGATCAAAGACTGATTAAGTCGAGTAAATATGATTATGATGGTCATAATCAGAGGCACAAGAGTATGGGTTATGACACTAATGCCAGAAATGATTCTCTTGTTCTTAAGAAATCGTCGTCTTCTGCTGCTCGATCTCGTGACCAGGTTGTGGTACTGAGGGTATCATTGCATTGCAAAGGTTGTGAAGGCAAGCTTAGGAAACATCTCTCCAAAATGGAAGGAGTGACATCATTTTCCATAGATTTGGAAACAAAAAAAGTGACGGTGATAGGAAATGTGACTCCATTGAGTGTATTAACAAGTATTTCAAGGGTAAAGAACGCCCAATTCTGGCCATCAGCAGCATCAGCCTCGCCATCATCGTCCTCTTCTTCTTCTTCAACTTCTTCGACAATCGATTTCAATTAATTTTATTATATGTTCATGGAATTTGCTTCCAATGTCATCAACTTAATGTGAATTAATTAAACTAAGGAGTACTAGGTTGAGATGGTTTCTTATTACGTTAAGTTTGTCAAGTTGTATAATCATTCCTGTTTTTTATCCTCAAAAAATTGCTTTATTAATTTCCTACTTTTTTTTGTGGTATACTTCGTATATTATATAGACCATAGACCGATAATACAATGTATCGTAAATTCCAATTTAGCAATTTCAAAAGTTAACGTGTTGGCTATATCGTTTACAAATACTACCTATCTATGAAGTACGATTAAAGAATTAATAAGAACTATGCAAATTAA ATGCCAATAATAAACATAAAAAATATCAAAGGCATAGATTTCTCCTGTGCCTCACCAGCATCAACAGCCATATGTTCTAGTACAGACCAAAATTTCATGGTTAAAAACACCACCAAATCCCTTAACCGCTTAAATTCCTACTTAAATGACCATTACAAAAATACCCTTAATCAGCATCAATCATCTTCTCCAAGAGCACCTTGCATCTCTGAACTACCCTTCACTCCTAGACTCTCATCCTCCTTCCGCGAAAAAACCCGAAAAAAATCTCCTTCTCCCTCTATCGTCAAACACAGTGATCTCACTCCTAGAAGAAAAAGCACGGCCGATATCGCCGATGTTCGACGTCGGTACTACGACAAATGCAGTAACAACAGTAGCATTCTGAGTCCTCCTCATAGTCATTCCTCTAGGTACCTTTTAGGTGAGTCTAAACTTCTGGATTCCCTTTCTGAGTCTCATCAAAATGTTACTAATTATAGAAAGAGTAGTAGTGATGCTCTGCCGTTGGTTCCTAGTACTCCTCTACTTGTTAGCAGAGAAGCTCATGAAACCAAGAGTTTTGGATCATTCTTGGATGTTCAAAAAGGAAACAAGTCATTAACGATTGTTAATCCTAGTGATCAAAGACTGATTAAGTCGAGTAAATATGATTATGATGGTCATAATCAGAGGCACAAGAGTATGGGTTATGACACTAATGCCAGAAATGATTCTCTTGTTCTTAAGAAATCGTCGTCTTCTGCTGCTCGATCTCGTGACCAGGTTGTGGTACTGAGGGTATCATTGCATTGCAAAGGTTGTGAAGGCAAGCTTAGGAAACATCTCTCCAAAATGGAAGGAGTGACATCATTTTCCATAGATTTGGAAACAAAAAAAGTGACGGTGATAGGAAATGTGACTCCATTGAGTGTATTAACAAGTATTTCAAGGGTAAAGAACGCCCAATTCTGGCCATCAGCAGCATCAGCCTCGCCATCATCGTCCTCTTCTTCTTCTTCAACTTCTTCGACAATCGATTTCAATTAA MPIINIKNIKGIDFSCASPASTAICSSTDQNFMVKNTTKSLNRLNSYLNDHYKNTLNQHQSSSPRAPCISELPFTPRLSSSFREKTRKKSPSPSIVKHSDLTPRRKSTADIADVRRRYYDKCSNNSSILSPPHSHSSRYLLGESKLLDSLSESHQNVTNYRKSSSDALPLVPSTPLLVSREAHETKSFGSFLDVQKGNKSLTIVNPSDQRLIKSSKYDYDGHNQRHKSMGYDTNARNDSLVLKKSSSSAARSRDQVVVLRVSLHCKGCEGKLRKHLSKMEGVTSFSIDLETKKVTVIGNVTPLSVLTSISRVKNAQFWPSAASASPSSSSSSSSTSSTIDFN Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo25187.1 vs. NCBI nr
Match: gi|902135122|gb|KNA04420.1| (hypothetical protein SOVF_199960 [Spinacia oleracea]) HSP 1 Score: 646.7 bits (1667), Expect = 2.200e-182 Identity = 342/342 (100.00%), Postives = 342/342 (100.00%), Query Frame = 1
BLAST of Spo25187.1 vs. NCBI nr
Match: gi|731349149|ref|XP_010685849.1| (PREDICTED: uncharacterized protein LOC104900182 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 449.1 bits (1154), Expect = 6.800e-123 Identity = 262/354 (74.01%), Postives = 293/354 (82.77%), Query Frame = 1
BLAST of Spo25187.1 vs. NCBI nr
Match: gi|698477276|ref|XP_009785870.1| (PREDICTED: uncharacterized protein DDB_G0271670 [Nicotiana sylvestris]) HSP 1 Score: 189.1 bits (479), Expect = 1.300e-44 Identity = 143/331 (43.20%), Postives = 182/331 (54.98%), Query Frame = 1
BLAST of Spo25187.1 vs. NCBI nr
Match: gi|697178519|ref|XP_009598243.1| (PREDICTED: uncharacterized protein LOC104094089 [Nicotiana tomentosiformis]) HSP 1 Score: 172.6 bits (436), Expect = 1.200e-39 Identity = 134/326 (41.10%), Postives = 171/326 (52.45%), Query Frame = 1
BLAST of Spo25187.1 vs. NCBI nr
Match: gi|747084045|ref|XP_011089413.1| (PREDICTED: uncharacterized protein LOC105170375 [Sesamum indicum]) HSP 1 Score: 169.1 bits (427), Expect = 1.400e-38 Identity = 138/333 (41.44%), Postives = 174/333 (52.25%), Query Frame = 1
BLAST of Spo25187.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QAY0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_199960 PE=4 SV=1) HSP 1 Score: 646.7 bits (1667), Expect = 1.500e-182 Identity = 342/342 (100.00%), Postives = 342/342 (100.00%), Query Frame = 1
BLAST of Spo25187.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BW24_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g174670 PE=4 SV=1) HSP 1 Score: 449.1 bits (1154), Expect = 4.700e-123 Identity = 262/354 (74.01%), Postives = 293/354 (82.77%), Query Frame = 1
BLAST of Spo25187.1 vs. UniProtKB/TrEMBL
Match: A0A162A5D5_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018872 PE=4 SV=1) HSP 1 Score: 166.0 bits (419), Expect = 8.000e-38 Identity = 128/324 (39.51%), Postives = 175/324 (54.01%), Query Frame = 1
BLAST of Spo25187.1 vs. UniProtKB/TrEMBL
Match: A0A022PT31_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a011197mg PE=4 SV=1) HSP 1 Score: 165.2 bits (417), Expect = 1.400e-37 Identity = 130/335 (38.81%), Postives = 174/335 (51.94%), Query Frame = 1
BLAST of Spo25187.1 vs. UniProtKB/TrEMBL
Match: B9GET1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s24140g PE=4 SV=2) HSP 1 Score: 154.8 bits (390), Expect = 1.800e-34 Identity = 136/329 (41.34%), Postives = 177/329 (53.80%), Query Frame = 1
BLAST of Spo25187.1 vs. ExPASy Swiss-Prot
Match: CCH_ARATH (Copper transport protein CCH OS=Arabidopsis thaliana GN=CCH PE=1 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 4.500e-10 Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 1
BLAST of Spo25187.1 vs. ExPASy Swiss-Prot
Match: ATOX1_ARATH (Copper transport protein ATX1 OS=Arabidopsis thaliana GN=ATX1 PE=1 SV=2) HSP 1 Score: 66.2 bits (160), Expect = 7.700e-10 Identity = 32/65 (49.23%), Postives = 47/65 (72.31%), Query Frame = 1
BLAST of Spo25187.1 vs. TAIR (Arabidopsis)
Match: AT2G28660.1 (Chloroplast-targeted copper chaperone protein) HSP 1 Score: 109.4 bits (272), Expect = 4.500e-24 Identity = 73/167 (43.71%), Postives = 100/167 (59.88%), Query Frame = 1
BLAST of Spo25187.1 vs. TAIR (Arabidopsis)
Match: AT2G37390.1 (Chloroplast-targeted copper chaperone protein) HSP 1 Score: 102.1 bits (253), Expect = 7.200e-22 Identity = 49/86 (56.98%), Postives = 66/86 (76.74%), Query Frame = 1
BLAST of Spo25187.1 vs. TAIR (Arabidopsis)
Match: AT5G02600.2 (Heavy metal transport/detoxification superfamily protein ) HSP 1 Score: 101.3 bits (251), Expect = 1.200e-21 Identity = 105/326 (32.21%), Postives = 141/326 (43.25%), Query Frame = 1
BLAST of Spo25187.1 vs. TAIR (Arabidopsis)
Match: AT3G53530.2 (Chloroplast-targeted copper chaperone protein) HSP 1 Score: 94.0 bits (232), Expect = 2.000e-19 Identity = 83/227 (36.56%), Postives = 118/227 (51.98%), Query Frame = 1
BLAST of Spo25187.1 vs. TAIR (Arabidopsis)
Match: AT3G24450.1 (Heavy metal transport/detoxification superfamily protein ) HSP 1 Score: 81.3 bits (199), Expect = 1.300e-15 Identity = 36/68 (52.94%), Postives = 52/68 (76.47%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo25187.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo25187.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo25187.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 2
BLAST of Spo25187.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|