Spo25197 (gene)

Overview
NameSpo25197
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01397 : 58898 .. 60042 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATATCTGGTGTTGTCCTTCTGTCCTATGTGTATTGTGTGGATATATTATTTTCTTGGTTTTTCCAGGGGGAAAGGGGGCAGACACTCATGTAACTCTGTCATTATGAATATATAATTATTATCCTGCAGATTATGATTCTGCATGAAGTTTATTCAGCTTTCCAAGTTAACTCCACCGGTTCACATAGTTTTCATTTCTTCACTATCAAGGTTGGCTCTTGGCAAACCTAAGAATGGTTAATGATGATGTAATCAATGATATGATTCCGACTCTCATGTAACTTCAGAGGTCCGTGGTCATATAACTATAACCTCAAAGTTCCACTTTGGTGACTACAGTCTTCCTTTTAGGTTTTAGCTGTGTGTCTTCTGATACAGGAACTGTGATTTTGATGAGATCTCAGATATGTTAGGCCTACCATATTTTCTGCTCTCAGTAATATACTCTTATTAGGTCATGGGTCCTTTCAGCTAGACAAGCTCATTAAGCAGATCTTCAAGAAGAAACTGCAGGAGGATTCAAGAATAATGGTCATGGAACTGTGAATCTGTGATTGTCTGAACCCAGTTGCTCTAGAACAGTTATCAGAACTAAAAAACTGCAAAACACTCAGAAGCCTGGAAAGAGAACTATTCCCGTGGCGACTGCAGTTGACAGATGCTTCAAGCTCAATGCTGTTGGTTCTGCTGCTGGTGTCGGAACTGGTTGAAATTCTGCTTCAACTTTCATGCATGAGCAATATGTTCTGTTATTAGCTCTTCTGAGTTAACAGACCTGGAGAAACAAGTAAAAACAACCCAGGAAACTGATGCTACTTCCACTACTTGCCTTGCAGGTCAGAATTTCAGTTCCCTCATCACCCCTCATCTTTCCTTGTTTACCTCTTACTCATCATTTAATACTCTTTGCATTATAAAAGACTCTTAATGGCCAAAGAGTTAAAATGTTAATGACTATTTGTTTTGGGTACTTGAATTTTAGTAGAAGTGCTGTGCTAACTGTCAGACTGCCAGGTGTTGGTATAGAGACTATGGCGTATACTGATGAGTTTTTTTTTTTTTTTTTATAGGCATCAACCATGGTCACTGTTCGACAGCAGAGGAGTCTTTAGTTGCTAAGAACAAGCTGAGATTTTGTTAA

mRNA sequence

ATGAATATCTGGTGTTGTCCTTCTGTCCTATGTGTATTGTGTGGATATATTATTTTCTTGGTTTTTCCAGGGGGAAAGGGGGCAGACACTCATAAGCCTGGAAAGAGAACTATTCCCGTGGCGACTGCAGTTGACAGATGCTTCAAGCTCAATGCTGTTGGTTCTGCTGCTGGTGTCGGAACTGACCTGGAGAAACAAGTAAAAACAACCCAGGAAACTGATGCTACTTCCACTACTTGCCTTGCAGGCATCAACCATGGTCACTGTTCGACAGCAGAGGAGTCTTTAGTTGCTAAGAACAAGCTGAGATTTTGTTAA

Coding sequence (CDS)

ATGAATATCTGGTGTTGTCCTTCTGTCCTATGTGTATTGTGTGGATATATTATTTTCTTGGTTTTTCCAGGGGGAAAGGGGGCAGACACTCATAAGCCTGGAAAGAGAACTATTCCCGTGGCGACTGCAGTTGACAGATGCTTCAAGCTCAATGCTGTTGGTTCTGCTGCTGGTGTCGGAACTGACCTGGAGAAACAAGTAAAAACAACCCAGGAAACTGATGCTACTTCCACTACTTGCCTTGCAGGCATCAACCATGGTCACTGTTCGACAGCAGAGGAGTCTTTAGTTGCTAAGAACAAGCTGAGATTTTGTTAA

Protein sequence

MNIWCCPSVLCVLCGYIIFLVFPGGKGADTHKPGKRTIPVATAVDRCFKLNAVGSAAGVGTDLEKQVKTTQETDATSTTCLAGINHGHCSTAEESLVAKNKLRFC
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo25197.1Spo25197.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo25197.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25197.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25197.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25197.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0015991 ATP hydrolysis coupled proton transport
cellular_component GO:0005634 nucleus
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0033179 proton-transporting V-type ATPase, V0 domain
cellular_component GO:0005774 vacuolar membrane
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004721 phosphoprotein phosphatase activity
molecular_function GO:0008022 protein C-terminus binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0015078 proton transmembrane transporter activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo041790.67Barchart | Table
Spo069230.67Barchart | Table
Spo027490.66Barchart | Table
Spo246130.66Barchart | Table
Spo032510.65Barchart | Table