Spo25213 (gene)

Overview
NameSpo25213
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionDEAD-box ATP-dependent RNA helicase-like protein
LocationSpoScf_01397 : 33538 .. 41134 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTAGTAATTTTGTTTCGTATGGTATTGTGTTGGCTTATTGCAATTTGTGATTTTGTTCAGAAGGAATGCTTTTTATCTCTGGCTATTCGATGTATTGTGTTGGCTTATTGCAATTTGTGATTTTGTTATGAAGGAATGCTTTTTACTCTCTGGCTATTGGATGACAGAGTTTTTATGAGGAGAATCTTTAGAATACTTGAATTGGACCCTCAAAGTTTATGGATTACCATGTAGACATCTGCAGTTAGGGTGCCTTACTGATTTGAGTTCTTGCTGTTCTTATTTCTGAAGCTAGCTTAACGTAGCCGTTTAGAATATAGACAAATTGGCAATTTGGTTGTTTCCGAATTTGTCACACCATAAACAAAATGAAATGAGTGTTTTTTTTAAATTTTTTTTATTTCTCAATATCTCCAATTAATATAAGTTTGGCGGTGAATTCACAGGGAGAGATTTTCATTCATTCGTATGCATCACCGTTGTTTTTAAGCTGTACTTTTGGGTGCCAATTTTGTTTTGTAAGATTCTATTTCTCTAAAGTGTAGACATAAAGTACCATGATAATTATCATAGATTTTACTTTGAAGTCGAACGATGTTAACAAGGATATGGGCTAAATTGTTCGCGAAAAAAAAGGATATGGGCTAAATTTTTTTTCTTTGAATTTGGTGCAGAAAGCTGCTTTGAACCTGCAATGCAGGGCCGTGACATGATTGGTCATGCGAGCACAGGAACTGGGAAGACCCTTGCGTTTGGAATCCCAATATTTGATAAGATTACACGCCATAATGCAAAGAATGGGTATATCAACTACTTTGGTTATTTGGGATTTTCTGGAAACTTTGTGTTTCGTTGATGTTCTTATTAAATGTGTTTGCAGTACAATGTTCTACTCACATTGTCTTCTGTCGAGTAAAGGTCCATTGGGTGCCATTTGGGTTGCCGATTACTTCTTCAAACGCCTCACAAAGCGGCAGATTACTGGCACTGATATTTCTTCTTCTGTTGGTTTGTTTGTTCCCCTTATCTCTATCTTCTTTCATTTTGCAGATTAATGCTTCATTTTGTTTGTTTTTTTTGTTGGATTTTAATCTGATTTTTATTGTGTTCACTGTTGTTGATTGTGTTTGTTCAACATTTTTGAGATGTAGTTTTATCATTTTAGGGTTTGAAATCATAAGTTTTAATTTTGAAAATAAGTTGTGTGTTCTTGAAATCATGAAGATAGGTAAGCTTGAGTTCTTCCCAAACATCTTTAGCAGGGTCTGATTTATTGGAGTAATGCCATTCAGGTTATCGCATAAGGAATTTAAATTGTTTTGACGACATATATGGTGATCATTTACTTGCCTGCATTTGTGTAGGTAATTTCTTTTCCATGGATACTTTTGAATTTATCTTAGCTCTCAGGTCTCTTTTATATCGACTTCTGCCATAAATTATATTTGTTTGTGTGACTCTTGCAAAAGTTTTTTGTCTGCCTTATATGCACGAGAATTGTAATGTACAAATGATGTGATAGCAGCCCTGGCTGCAGCTTCTGAATTTGACATATAGAGTATCTGCATTAAAAAAATATATATATACAGATTCTTCTCGCTTTTTGATTCGCAGCAAATGATGAGACTTTTAGGACTACCCATATTGTTGCAAGTGCTATCTCCTCCAAACCATATACTTCGTATATACAAAAGGTTATGCAACTATCTTTTTTAGAAAATAATTAAGCATGCATTAATGAATTTGATCTCCTCCCAAAACTATCTTTAATGCATTTCTTCTTCTCCACTCGAAAACCACTATAATGTTGCATCGAAGAACCTCAAGAACCATGATCGCGATTCTTTTAATAGGATTGTCTGACCTCTTATCTGTCATTCATTCCTTGGCCTTTATTAGACCATTCAAACTTATCTTCTAAGCTTAGTTCTGGTGGCGGCTTTAAGGATTTCGTGTTGTTTTTTCCATTGAGGGAAAGTGGTGGTGGTGCTGTGTTAGGCTTATCGTTGCTTTGTGATGATGAATTGTTGTGTAATATCAGAAGTTTTTCCTTTGAGGAGCTTCGTTGATCAATGACTTGGTGTAGCGCGAAGAACTTTGCAAGAGAGACATGAGGATTTATGGGTGAAGCAAAGGAACATAGATCTGCGAACATATTTTGTAGTGCATCTCTACTATATAAGCCAGTAATTAGTTTGTTCTTGAAACGTCTTTGCTTGATAATTTGATTATTATATGGGCGTTTGAAATTTGGTTGATTGGTATTGTATGAGACATGGAAATTTGATTTAGTTTAGTGAAGTGAGGTAAAAATTAGATCTTTTGTCGTATAATTTGGTATTTATGAAATTCTTGATTTCTTGGGTATTTTGCAAATTAGTTGAGTGTGCAAGAAGCGGTTGGGGTTTTGAATGATCTTGGAACTGCTGGAAGTGCCTGGAAGTGCCAATGAGGAAGAGCAGAGTTGTTCTAATATCATATCTAGATTGTGAGTGCGAGGAGTTTGACAAAAAGTTCTATTATTTGTTAAACATATTCTTTAGTTTGTAATCATGGAGAAAACCATGTTATTTTAAATCATTATTTGTTAAACATGATAATGAATTCATGATGATTTTGATGATTATTCTGATTATATGGATTTTTTTTCTTAATCATATTTTTTTAATTCATTAACATGCACTTTTTCATTAAATCTTCTCTGTATTTTGTTTTTTTTCCCTAGGAGAAGCTTGCTGCTGTGGAAAGTGAAGGGAGTGGTATGGGGTCTGCTGAAGCGGCCATGTTCTTGCAGGTGGTGGTGGGGTTTGGTTTGAAGGAGATTTTTGATGAAGAATTTTACAAGGATATGGTGGTGGAGTTTGCTGCTAGGAGAGATATGGACATATGGATGAGCTTGCTGTTCTCATTTTTTGGGGATCAAACTGCATACAGGCATATTTATTTATTTGTAGTCTTTAATTATGTTCTTCAGTTGTCTTAAGTACGGAGTATAACTTATATCAATGTATGCACCTGTCTTTATCTAAGAATATGTCTTATTCATGGGAATTTTTGCAGTTGGTAATTGTAATTAGGGAGTGGGGTAGAATCAGAAGAAGAGAGTGTGTGTTGTAACTTGCAGTGCTTTTGTACGACGAGCTTGAGGGAAGTCAAATTTTGTTGTATATGAACATGTTTTTGTGCCTATTATTTTTTTAGGTGATTAAATGTAATATACAATATTTAGTTTTTAAACATCCGCACGCATCGCGTGCATATAAGACTAGTTCTACTGTAAACAAACTAAGAACTTCCTAAGCAGCCAACCACCGAACCATAATCACTGTCATTCCTCAAAAACAATATTATGATTGCAGAATTACATTCTAATTCATTCTCCTCACCGCAATCATAATCACTGCATCTATAACAAAAACAAAAAGAACAAATCATCAATTTCTCAACAAAAATGGAAATAAATTCAATTAATTGGAATAATTGGAGAGAGGAAGAGGAATACATACAATATTCGATAAATCTTGGACGAATTTGTTTTTCCCCATAAACAAACATTCAATCAGAAGCATGAAATTATCAACAATATTGAACAATTAAGATCATTGAACACATAAATTACCTTCAGAAGTAAGAATTTTGAGTCTAATGGAGACTAAAACCAGAGGAGCAAATACAGGAAGTGAGAGAAGAAAGAGGATGAAGATCCTCTGCCATCTTCGAAACTGCTTCATCAATCAATTTAGTCGAATAAATCATCTCTAAAACGTGTTTATGTATACATTTTTGGACAGTTAATAATATGTTTTAGACTTTTGATTTTAATTGACAGAAATGATATTTAAGTTACATAAAGCTAACATCTGTAGACCGTAGAAGTACTTAGCATTAGGATTTAGTAGGACTAGAAGTGAATTGTTTTTCCTTAATTAGTTCTAAATTTAGATAGTTGATGTGATATTGCTTATATTTAGCTCCTTTTTTTAGTCGATTTCGGTCAGGTTTGATTTCGGGTTCGGGTCTTATCGGGTCGGGTTTAAGTCGGTTTGTAGCAGATAATTTCGGGTTCGGGTCTTATAGAGTCGGGTTTAAGTCGGTTTGCAACACAGTTATTTCGGGTTCGGGTCTTAGTTTGGATCGGATAATAATCAGATCAAATAGAATTCAGATCGGGTCACTCTCAGGATCGGGTCACTCTCAGGGACGGGTCAAACTCGGGTCTGATAATTAACCTATACATTTTAAGGATTTTATGTTCTAAAAAATTTTGTTTAACTTATTTTAGAGTTAAAATTTTCAATATTTAGCAATAAATAATTAAAATAGATATATCAATGAAGTTAATATTTGGTCGTGTTATTGATAACTCGGGTAAATCGAGTAGCGGGTTCTCACAGGTCGGGTCAATATCAGGTTTCATCGAGTTACAATCGGTTTCGGGTTGACATCGGGTCGGGTATCAAATCGGGTTCGGGTCATTGTTCGGTCGGGTCAGTTCGATTATCGGTCATTTTCGGGTCGGGTGTCGGGTTTGGGTTCGGGTGTTACAACATCGGGTTAAAATCGGTTATCGATTTTTTCGGGTCGGGTACAGGTCGGATTTCGGGTTACCTGTTTTACCGTAATTTCGGGTCATGGTCGGTTACGGATTCGGTCGGTTCAGGTCGGGTTTTCGGGTCGGGTCAGTTTTTGACAGCTCTAGCTAGAAGACACCCACAACATAAGTACGTACTTCATAGTTCGTGCTTTTGAGCCATCAGGACGGGACTAACTAATATATGCTCGAGAAAAAAACTAGCTAGCACAATCCTATATACGTAGTATAAGTCATGTAGGGTGTTCCATCTTAAAGAAAATGATACCAAGTGAAGTAACACCGGACTATATATTCATGTGGATCACAACTAGGGTTGTCAATCCTTGACTCGGCTCGATAACTTAATTCGAACACGACCTAAAATTATTGAGGAAAACTTAAATTCGACCTAAAGTTATTGATGGAAACCTGAACGTGGCTTGAGACTAAATCTGTATGACCTGAATTCAACCCGACTTGACAAATTTATCATATTTCATAGTAATATCAAATTTTACGCTAGTTTTGATACTTTTAGGCACAACCCAAGTTCAACATGAAACCAAACCCGAATCCATCCCATTGACCTGAATTGCCACCCCTGGACCCTAGTCCCAACTCATATGCGATTTTCCTTAACAAAATATAGTTTTAATGGTTCTATAGAAATGTATGTATGTTGACCCACATGGTTTTGATGATGACAGGCAAACTTAACTAATAAATGTTTAAGTTTCTATGCTAAGAAAACCAGGAGTTCCAGAGCAGGAACAAGAGAAGGCCAAAGCATGTAGACTTGGACAATTAGAGAAACTGATCAAGCAGGCATAAATAAGTTCCTGATGGGAACATGGTTCGAGAAGTTCCAGAGGTGGAACAACCAACATGCGGAGCAGCATGGAACATGAAGACAGGAAATAAGAGTTTATTTTCTAGGATTNTGTTTGAGGGAACAACTATTGGGAACTTGAGTTCGTAGAGGAACTCAAGTAATGGCCAAGTTTCTTATAGGATTGTAACTGAGTTGTTGCCCTATAGTGAATAGAGTTTGAGTTGAAATCCCTAGTGGGTCGAGGTTTTCTTTCCAGTTGGGCCCTGGAAAGTTTCCTCGTAAAATCTCTCTTGCATTGTTTCTCTACTTGCTTATGTTCTTTATAATTCCGCAAAAATTGACTAGCAAGTTCCATATTACAATTCACCCCCCCTCTTGTAGTGTTCCATCCAAATAACAATGTAGGGCAAGGGGATATGTCGTATTATGTGTGTTATAAACTATAATGGCAAAGCGAAGAACATTATGAAACGGAGGGAGTAGAAGCTAGCTGATTCATGTTTTGGTACCCTTTGTAATTTCTTGTAAATCCTAGAAAATAATTTCTTATAACTCTACCAGATCGACCTTTCAAGGATTTATGAAATTGTGGAGTATGATTAATTAAAGGGGGAATAAATAATTTGTTACTTTTTTTAAGGGTAAAAAATTCGTGCATATTAGCTAGTACTCCGTATTATTTAGGACAAGGGGTTGACTCTTTCTAAAATTTATCTATTACTCTATTTGGACTCCCAGCTATCTTTTATTGGTAGTAATTTATCTCTTAATGTATTTGGATTCTTAGCAAACAAATATCTCTTAATAAAAATACATATGGATAAGATACCAACAATATATCAAGCATATTATTTTGATTATTTTGATATTTGCAATAATGAGAATTTACGATCAAAGTTTATAAAAGTTTGATCATAAAAATTAAAGTGTAATCTCAAAAAAAAAAAACAGAGGGAGTATTAGATTGGAAAAGGGGAATTGATAATTTTACTTACCTCAAAGCCAAATTCGTTCAAACGTACCGCCGAAACAACATATACTATGTCCCAACAAATAAAAAAACACCTACGATGTAATATAGTCATTGTATAATGGTAATGGATAACCTATCAGGGACATACAAAGTTACAATATATCAAAGTTGTCAATCGTGTTCTAATTAGAAAACTCAACTAAACACGAGCGATCCATAATTTATAAAGTTATCAAATCTTTAACTCAAGTATAAACTAAAATTTGCATACTCCATAGTTCACAAGCCATTTAAGCTTTTGTACCTTAGCTCAATGTCAACAACTTTTTAATTTTCATTTTCGAATGCAAATGCTCATACATGCATATCGCCCTAAGATAATTTGTACTACTCCCTCCGTCTCTTTTTGTTTTTTACGTTTTCCTTTTTTTAGTGTTTCAAAATGTTCTTTACCTTTCCTTTTATATTATCACATAAATGATTAATATTCTATCAAAATTTGTGTCTAATTATTATTTTAACCGATTAAATTCATTAGATCATTTAATCTCTCACACTTTTCCATTATGACATTAACTTTTTCTCATTTTCCCAATATCAGAATTTTGATAAGAGTGAAAACATTATAAATAAACGTAATTTTTCTCGTTTACATAAAAACTAAAAATAATCTCAATGCACATTAATTAGTCGTTACAACGCGTGCAAAATACCAAACGTAAAAAACAAAAAGAGACGGAGGGAGTACTTTTCAATTGCACCAATTGAAGTAGACCTGACCAAATGGTGGGCCGGGCCGGGTCTAGGCTTAAAATTTTTTAGCCCGCTGTGTCAGGTAGGGCCGGCCAAAATACCGGGATTTTGGGGCCTTTTTCGGGCCTAAAATACTGGGCTTTTCGGATCGGGCCAAATTTATAACTAAAAAGTGTAGTTTTGTGTTTCCCTAACCCGCCCAAAAAGTTTAAAATTTTCAGGCCGGGCCTGAAAATTCCAGGCGGGCCGGGGCGGGCTTGTCTTCATCGGGTCTAAATTGAAGTTTCACGACCCACGTACTACGATGGAGTACTAGTTTGGTAATTTGGTTAGTGTGTGAAAGACTGACTAGTGATTGACTGATAGTAGTGTTTCTCAAATCTCATACACCGTACTTCGTATCTTTCCGTTTTCTATCACTCGCATTTTTCTCTCCAAATCAATGTACAATCTATACCTTGA

mRNA sequence

ATGTGTAGTAATTTTGTTTCGTATGAAAGCTGCTTTGAACCTGCAATGCAGGGCCGTGACATGATTGGTCATGCGAGCACAGGAACTGGGAAGACCCTTGCGTTTGGAATCCCAATATTTGATAAGATTACACGCCATAATGCAAAGAATGGTACAATGTTCTACTCACATTGTCTTCTGTCGAGTAAAGGTCCATTGGGTGCCATTTGGGTTGCCGATTACTTCTTCAAACGCCTCACAAAGCGGCAGATTACTGGCACTGATATTTCTTCTTCTGTTGCAAATGATGAGACTTTTAGGACTACCCATATTGTTGCAAGTGCTATCTCCTCCAAACCATATACTTCGTATATACAAAAGGAGAAGCTTGCTGCTGTGGAAAGTGAAGGGAGTGGTATGGGGTCTGCTGAAGCGGCCATGTTCTTGCAGTGTTTCTCAAATCTCATACACCGTACTTCGTATCTTTCCGTTTTCTATCACTCGCATTTTTCTCTCCAAATCAATGTACAATCTATACCTTGA

Coding sequence (CDS)

ATGTGTAGTAATTTTGTTTCGTATGAAAGCTGCTTTGAACCTGCAATGCAGGGCCGTGACATGATTGGTCATGCGAGCACAGGAACTGGGAAGACCCTTGCGTTTGGAATCCCAATATTTGATAAGATTACACGCCATAATGCAAAGAATGGTACAATGTTCTACTCACATTGTCTTCTGTCGAGTAAAGGTCCATTGGGTGCCATTTGGGTTGCCGATTACTTCTTCAAACGCCTCACAAAGCGGCAGATTACTGGCACTGATATTTCTTCTTCTGTTGCAAATGATGAGACTTTTAGGACTACCCATATTGTTGCAAGTGCTATCTCCTCCAAACCATATACTTCGTATATACAAAAGGAGAAGCTTGCTGCTGTGGAAAGTGAAGGGAGTGGTATGGGGTCTGCTGAAGCGGCCATGTTCTTGCAGTGTTTCTCAAATCTCATACACCGTACTTCGTATCTTTCCGTTTTCTATCACTCGCATTTTTCTCTCCAAATCAATGTACAATCTATACCTTGA

Protein sequence

MCSNFVSYESCFEPAMQGRDMIGHASTGTGKTLAFGIPIFDKITRHNAKNGTMFYSHCLLSSKGPLGAIWVADYFFKRLTKRQITGTDISSSVANDETFRTTHIVASAISSKPYTSYIQKEKLAAVESEGSGMGSAEAAMFLQCFSNLIHRTSYLSVFYHSHFSLQINVQSIP
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo25213.1Spo25213.1mRNA


Homology
[Close]
BLAST of Spo25213.1 vs. NCBI nr
Match: gi|902202226|gb|KNA14207.1| (hypothetical protein SOVF_109750 [Spinacia oleracea])

HSP 1 Score: 82.4 bits (202), Expect = 8.400e-13
Identity = 38/47 (80.85%), Postives = 40/47 (85.11%), Query Frame = 1 

		  

Query: 5   FVSYESCFEPAMQGRDMIGHASTGTGKTLAFGIPIFDKITRHNAKNG 52
           F   ++ FEPAMQGRDMIG A TGTGKTLAFGIPI DKITRHNAKNG
Sbjct: 129 FPIQKAVFEPAMQGRDMIGRARTGTGKTLAFGIPILDKITRHNAKNG 175
[Close]
BLAST of Spo25213.1 vs. NCBI nr
Match: gi|902186683|gb|KNA10763.1| (hypothetical protein SOVF_141380 [Spinacia oleracea])

HSP 1 Score: 80.1 bits (196), Expect = 4.200e-12
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 1 

		  

Query: 49 KNGTMFYSHCLLSSKGPLGAIWVADYFFKRLTKRQITGTDISSSV 94
          +  TMFYS CLLSSKGPLGAIWVA YFFKRL KRQIT TDISSSV
Sbjct: 35 RKSTMFYSQCLLSSKGPLGAIWVAGYFFKRLKKRQITDTDISSSV 79
[Close]
BLAST of Spo25213.1 vs. NCBI nr
Match: gi|731332573|ref|XP_010677277.1| (PREDICTED: sister chromatid cohesion 1 protein 2-like isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 78.6 bits (192), Expect = 1.200e-11
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 1 

		  

Query: 52 TMFYSHCLLSSKGPLGAIWVADYFFKRLTKRQITGTDISSSV 94
          TMFYS CLLSSKGPLGAIWVA YFFKRL KRQ+T TDISSSV
Sbjct: 40 TMFYSQCLLSSKGPLGAIWVAGYFFKRLKKRQVTDTDISSSV 81
[Close]
BLAST of Spo25213.1 vs. NCBI nr
Match: gi|731332571|ref|XP_010677276.1| (PREDICTED: sister chromatid cohesion 1 protein 2-like isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 78.6 bits (192), Expect = 1.200e-11
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 1 

		  

Query: 52 TMFYSHCLLSSKGPLGAIWVADYFFKRLTKRQITGTDISSSV 94
          TMFYS CLLSSKGPLGAIWVA YFFKRL KRQ+T TDISSSV
Sbjct: 40 TMFYSQCLLSSKGPLGAIWVAGYFFKRLKKRQVTDTDISSSV 81
[Close]
BLAST of Spo25213.1 vs. NCBI nr
Match: gi|902202227|gb|KNA14208.1| (hypothetical protein SOVF_109760 [Spinacia oleracea])

HSP 1 Score: 77.0 bits (188), Expect = 3.500e-11
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 1 

		  

Query: 5   FVSYESCFEPAMQGRDMIGHASTGTGKTLAFGIPIFDKITRHNAKNG 52
           F   ++  EPAMQGRDMIG A TGTGKTLAFG+PI DKITRHN KNG
Sbjct: 124 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGMPILDKITRHNEKNG 170
[Close]
BLAST of Spo25213.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R5X8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_109750 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.900e-13
Identity = 38/47 (80.85%), Postives = 40/47 (85.11%), Query Frame = 1 

		  

Query: 5   FVSYESCFEPAMQGRDMIGHASTGTGKTLAFGIPIFDKITRHNAKNG 52
           F   ++ FEPAMQGRDMIG A TGTGKTLAFGIPI DKITRHNAKNG
Sbjct: 129 FPIQKAVFEPAMQGRDMIGRARTGTGKTLAFGIPILDKITRHNAKNG 175
[Close]
BLAST of Spo25213.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QVM5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_141380 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.900e-12
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 1 

		  

Query: 49 KNGTMFYSHCLLSSKGPLGAIWVADYFFKRLTKRQITGTDISSSV 94
          +  TMFYS CLLSSKGPLGAIWVA YFFKRL KRQIT TDISSSV
Sbjct: 35 RKSTMFYSQCLLSSKGPLGAIWVAGYFFKRLKKRQITDTDISSSV 79
[Close]
BLAST of Spo25213.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CHW3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g106350 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.500e-12
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 1 

		  

Query: 52 TMFYSHCLLSSKGPLGAIWVADYFFKRLTKRQITGTDISSSV 94
          TMFYS CLLSSKGPLGAIWVA YFFKRL KRQ+T TDISSSV
Sbjct: 40 TMFYSQCLLSSKGPLGAIWVAGYFFKRLKKRQVTDTDISSSV 81
[Close]
BLAST of Spo25213.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CI08_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g106350 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.500e-12
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 1 

		  

Query: 52 TMFYSHCLLSSKGPLGAIWVADYFFKRLTKRQITGTDISSSV 94
          TMFYS CLLSSKGPLGAIWVA YFFKRL KRQ+T TDISSSV
Sbjct: 40 TMFYSQCLLSSKGPLGAIWVAGYFFKRLKKRQVTDTDISSSV 81
[Close]
BLAST of Spo25213.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R3X4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_109760 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.500e-11
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 1 

		  

Query: 5   FVSYESCFEPAMQGRDMIGHASTGTGKTLAFGIPIFDKITRHNAKNG 52
           F   ++  EPAMQGRDMIG A TGTGKTLAFG+PI DKITRHN KNG
Sbjct: 124 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGMPILDKITRHNEKNG 170
[Close]
BLAST of Spo25213.1 vs. ExPASy Swiss-Prot
Match: RH53_ORYSJ (DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica GN=Os07g0143700 PE=2 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 5.500e-12
Identity = 32/48 (66.67%), Postives = 37/48 (77.08%), Query Frame = 1 

		  

Query: 5   FVSYESCFEPAMQGRDMIGHASTGTGKTLAFGIPIFDKITRHNAKNGT 53
           F    +  +PAMQG+DMIG A TGTGKTLAFGIPI D+I RHN KNG+
Sbjct: 108 FPIQRAVLDPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNEKNGS 155
[Close]
BLAST of Spo25213.1 vs. ExPASy Swiss-Prot
Match: RH9_ARATH (DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana GN=RH9 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.300e-12
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 1 

		  

Query: 5   FVSYESCFEPAMQGRDMIGHASTGTGKTLAFGIPIFDKITRHNAKNGTMFYSHCLL 61
           F   ++  EPAM+GRDMIG A TGTGKTLAFGIPI DKI + NAK+G      CL+
Sbjct: 140 FPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLV 195
[Close]
BLAST of Spo25213.1 vs. ExPASy Swiss-Prot
Match: RH53_ARATH (DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.300e-12
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1 

		  

Query: 5   FVSYESCFEPAMQGRDMIGHASTGTGKTLAFGIPIFDKITRHNAKNGTMFYSHCLL 61
           F   ++  EPAM+GRDMIG A TGTGKTLAFGIPI DKI ++NAK+G      CL+
Sbjct: 128 FPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLV 183
[Close]
BLAST of Spo25213.1 vs. ExPASy Swiss-Prot
Match: RH9_ORYSJ (DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp. japonica GN=Os12g0611200 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.600e-11
Identity = 31/46 (67.39%), Postives = 34/46 (73.91%), Query Frame = 1 

		  

Query: 5   FVSYESCFEPAMQGRDMIGHASTGTGKTLAFGIPIFDKITRHNAKN 51
           F    +  EPAMQG+DM+G A TGTGKTLAFGIPI D I RHN KN
Sbjct: 122 FPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAIIRHNEKN 167
[Close]
BLAST of Spo25213.1 vs. ExPASy Swiss-Prot
Match: SCC12_ARATH (Sister chromatid cohesion 1 protein 2 OS=Arabidopsis thaliana GN=SYN2 PE=2 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 3.900e-10
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1 

		  

Query: 53 MFYSHCLLSSKGPLGAIWVADYFFKRLTKRQITGTDISSSV 94
          MFYSHCL+S KGPLGAIWVA YFFK+L K Q+  T I SSV
Sbjct: 1  MFYSHCLVSRKGPLGAIWVAAYFFKKLKKSQVKATHIPSSV 41
[Close]
BLAST of Spo25213.1 vs. TAIR (Arabidopsis)
Match: AT3G22330.1 (putative mitochondrial RNA helicase 2)

HSP 1 Score: 71.6 bits (174), Expect = 5.200e-13
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1 

		  

Query: 5   FVSYESCFEPAMQGRDMIGHASTGTGKTLAFGIPIFDKITRHNAKNGTMFYSHCLL 61
           F   ++  EPAM+GRDMIG A TGTGKTLAFGIPI DKI ++NAK+G      CL+
Sbjct: 128 FPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLV 183
[Close]
BLAST of Spo25213.1 vs. TAIR (Arabidopsis)
Match: AT3G22310.1 (putative mitochondrial RNA helicase 1)

HSP 1 Score: 71.6 bits (174), Expect = 5.200e-13
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 1 

		  

Query: 5   FVSYESCFEPAMQGRDMIGHASTGTGKTLAFGIPIFDKITRHNAKNGTMFYSHCLL 61
           F   ++  EPAM+GRDMIG A TGTGKTLAFGIPI DKI + NAK+G      CL+
Sbjct: 140 FPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLV 195
[Close]
BLAST of Spo25213.1 vs. TAIR (Arabidopsis)
Match: AT5G40840.2 (Rad21/Rec8-like family protein)

HSP 1 Score: 66.2 bits (160), Expect = 2.200e-11
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1 

		  

Query: 53 MFYSHCLLSSKGPLGAIWVADYFFKRLTKRQITGTDISSSV 94
          MFYSHCL+S KGPLGAIWVA YFFK+L K Q+  T I SSV
Sbjct: 1  MFYSHCLVSRKGPLGAIWVAAYFFKKLKKSQVKATHIPSSV 41
[Close]
BLAST of Spo25213.1 vs. TAIR (Arabidopsis)
Match: AT5G26742.2 (DEAD box RNA helicase (RH3))

HSP 1 Score: 52.0 bits (123), Expect = 4.300e-7
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 1 

		  

Query: 14  PAMQGRDMIGHASTGTGKTLAFGIPIFDKIT 45
           PA+QGRD+I  A TGTGKTLAFGIPI  ++T
Sbjct: 135 PALQGRDIIARAKTGTGKTLAFGIPIIKRLT 165
[Close]
BLAST of Spo25213.1 vs. TAIR (Arabidopsis)
Match: AT3G16840.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 51.6 bits (122), Expect = 5.600e-7
Identity = 27/72 (37.50%), Postives = 41/72 (56.94%), Query Frame = 1 

		  

Query: 9   ESCFE-PAMQGRDMIGHASTGTGKTLAFGIPIFDKITRHNAKNGTMFYSHCLLSSKGPLG 68
           ++CF   A QG+D+IG A TG+GKTLAFG+PI  ++     K G ++      + KG   
Sbjct: 218 KACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLY------ALKGEEA 277

Query: 69  AIWVADYFFKRL 80
             + AD + + L
Sbjct: 278 QKYAADGYLRAL 283
The following BLAST results are available for this feature:
BLAST of Spo25213.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902202226|gb|KNA14207.1|8.4e-1380.8hypothetical protein SOVF_1097... [more]
gi|902186683|gb|KNA10763.1|4.2e-1284.4hypothetical protein SOVF_1413... [more]
gi|731332573|ref|XP_010677277.1|1.2e-1188.1PREDICTED: sister chromatid co... [more]
gi|731332571|ref|XP_010677276.1|1.2e-1188.1PREDICTED: sister chromatid co... [more]
gi|902202227|gb|KNA14208.1|3.5e-1174.4hypothetical protein SOVF_1097... [more]
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BLAST of Spo25213.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R5X8_SPIOL5.9e-1380.8Uncharacterized protein OS=Spi... [more]
A0A0K9QVM5_SPIOL2.9e-1284.4Uncharacterized protein OS=Spi... [more]
A0A0J8CHW3_BETVU8.5e-1288.1Uncharacterized protein OS=Bet... [more]
A0A0J8CI08_BETVU8.5e-1288.1Uncharacterized protein OS=Bet... [more]
A0A0K9R3X4_SPIOL2.5e-1174.4Uncharacterized protein OS=Spi... [more]
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BLAST of Spo25213.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RH53_ORYSJ5.5e-1266.6DEAD-box ATP-dependent RNA hel... [more]
RH9_ARATH9.3e-1260.7DEAD-box ATP-dependent RNA hel... [more]
RH53_ARATH9.3e-1260.7DEAD-box ATP-dependent RNA hel... [more]
RH9_ORYSJ4.6e-1167.3DEAD-box ATP-dependent RNA hel... [more]
SCC12_ARATH3.9e-1073.1Sister chromatid cohesion 1 pr... [more]
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BLAST of Spo25213.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT3G22330.15.2e-1360.7putative mitochondrial RNA hel... [more]
AT3G22310.15.2e-1360.7putative mitochondrial RNA hel... [more]
AT5G40840.22.2e-1173.1Rad21/Rec8-like family protein[more]
AT5G26742.24.3e-770.9DEAD box RNA helicase (RH3)[more]
AT3G16840.15.6e-737.5P-loop containing nucleoside t... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006910Rad21/Rec8-like protein, N-terminalPFAMPF04825Rad21_Rec8_Ncoord: 53..94
score: 1.
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 11..51
score: 1.
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 10..52
score: 1.3
IPR027417P-loop containing nucleoside triphosphate hydrolaseunknownSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 11..49
score: 3.4
NoneNo IPR availablePANTHERPTHR12585SCC1 / RAD21 FAMILY MEMBERcoord: 54..93
score: 1.2
NoneNo IPR availablePANTHERPTHR12585:SF31SISTER CHROMATID COHESION 1 PROTEIN 2coord: 54..93
score: 1.2

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0016311 dephosphorylation
biological_process GO:0019872 streptomycin biosynthetic process
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0046854 phosphatidylinositol phosphorylation
biological_process GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process GO:0000023 maltose metabolic process
biological_process GO:0006021 inositol biosynthetic process
biological_process GO:0009987 cellular process
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0044262 cellular carbohydrate metabolic process
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005829 cytosol
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0008934 inositol monophosphate 1-phosphatase activity
molecular_function GO:0052832 inositol monophosphate 3-phosphatase activity
molecular_function GO:0052833 inositol monophosphate 4-phosphatase activity
molecular_function GO:0046872 metal ion binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo111630.68Barchart | Table
Spo028260.67Barchart | Table
Spo123790.67Barchart | Table
Spo153430.67Barchart | Table
Spo264890.65Barchart | Table