Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAAGAGCTGATTTTACACGTTGCACGACATACTTATCACCACGTGAACCCTTTAACATGTCGACATTTGATCATTCCTTAATTAATTCCTTCTCTATCCCCTACTTTTTTTAATCAACCTCCTTTTATACCTTTCTCTTTTTCTCTCTTTTTTCCCTCTCCTCCCCTTTTTCTTTCATCAACAACAAAGAACAACAACAAAGATTGCATTTTACCTTTTGATATTTAAACCCACGTAATTCCTTTCACAATCTGGGTGTTCGTCAATTTGTAATCATCTTGTTTGGTTAGTCCACTTTTCCCTTTTAATTTCTTCTGCAATTATATACAGCGATTGATTGAACAATCTTTTTCTTATGAATTAGGATCTCTTCTGTTTTCTTGGGAAATTCTTTTTACTGGGTTTTCTCAATTGTTTGTAAATGTGATGAACTTGGGTTTTGATTATAATTGGGTAATTAATTAACCGCATTGTGCATAATTTATGTTGGGTTATGCTTTTTTTTTTTTTTTTTGTGATTGACTTTGTACTATACCATCTATACTGCTTTCAACAGGAGGGGACTGTACCCAGGAATTTTGATTTCAATTATAATGCATTGATGATTGGTTTGCTTATTTGTTGCAAAGATATGTAGTTTTGATGAAACAAGCAGTAGCGGCAAGTAGACTATTTGCATTAGTACAATTTAATTTGGTATAATGGGCAGGGAAGTGTTCAAATGAGCTTTGATCGCATTCAGAATGGTTTAGGTTTTTGAAAGTTCATCGTTTTCACGAGGATTAAGAGTTACATTTCTTGATGTGTATGGAAGAGATTTGGCTTTGATTTTCAGTCTGGTTTCATCTAGGAGTGCTAAATAGTAGCATTGCTTGGAGGGTTTGGTTAAGAATGTCAAGTTTAGAACGATTTAGGTAACCTTATGGACTATGTGTGACTATTGACGACTTAAGGATAGCTAACATTTGAGTAGCCGCGGGGATCACAATAGTATATTACCCAATGTTGTCCCTTGTGAAGTCTTTGGTGGAATGAGTTATTGCATCTTGGAATTTAGAACCAAGTGTTTGTGGATTCCGATCCGGATTTGCTAAGTATTGATGCACAAAAACCTGAAGAATATTAAGGGTGGAAATCTATGGAATATGGACATGATTCGTGATGTATTATGTATTAATCGATGGATAGTACTCTTGATTCTCGCAAGAACTAAATAGCAAAAGTTCATCAATTCACAAAACTTAAATATGGTTTTTGTTCATATTAAACAATGCCTTTATATAGACAATAGAGTTTCGCCTTCCTAGATTCCTAAGCCACCTAACACTTGCAGCCAAAAGAGTCCTAAACAAATTGGAATAACAAGTGGAATCACAAGTTGATTGACCCATGACCCATGAGTGCAGTCTGCAGAATGTAGGCAGACTGCACTCATCCAAAATTAAAAAATTCTGTGGAGTATTAAGTTTCTGAATTTTTTACTTCCGATGTTTTGAAAAGTTATTAATTTGTAAAAATAATGAAAGGGTCGCCGGCTTTTCTATGGTGTCTGTAGGAAATTTTATTACATGGCATATTTTAGCCTCAAAATTCTCGAGATTTTTCCTAGTGGGATTAGTGAACATTGTGAAAAGATTTCTGTGTTCAGTTTGGCTGTGTGTATATATCTATGTAAAACTTTGGCAATCCACCCTGCCTGTTCTTGTGGGAATGGATAAAATATTCCAGTCAAAGCCTATTATCAGGAAAACCCTGTGTTCAAACCATTGGTGAGCCCAGCAGGTGTTATCATCTTCGCTTATGCATCTACCACTTCAAAGTACCATTTTCTCTAACTTCGGTTTCCTTTGTAAGAGCAATCACATATTTATTAGACAATGAATTGCATTTCCTGCACAAATTTGACGTTTATTCAGCTTCTACAGCCCTCTTGCTGGTTATTGAATTTCTGCTTTGAGGGTTGGACTCTTTTTTAACCTTCCTTGGATACTTTCTTCAGTGACACCATTTTTTACCCTTTCGGGAAAATGACCCTGTTAATAGTTCCTGAATCCGTATGCATACGGATGAATGCTCTAGCTTGTTCTGTTGTGAATACTAGCCGATGTTGTCATGTTTATTTTTACTTATTACTTCTCTTTTTCTGCCATCTTCTACTCAGACAGATCAATTTGGCACAAGCTTGACACATTTGATTACTATGTCTTCACCAAGTAAGAGAAGAGAGATGGATGTTATGAAGCTGTAAGCTCCTCAGCGTCTTAATATTCTTTTTTTCTAAAATATACTGAATTCTGTATCTCTGTGGTTTTAATATTGGCCGTACGTTACTTTGGCATGGCTTTAAGATCAATACAGGCAGTTAGAAGTGAATGAAGGGTTCATCCAACATAGTTCTGGAGTCTGAACTAACAGTACCTGTTTTTATGTGCATCTGCTCTAAGAATCTGAAGCATTTGTTGCTCAAGTTTGTTGCATCATATCCTGTTGTCGTTATACTATTACCATATTATTTTTTCCTTATGCCTTTAAATCTTTAATGAGGATTCCTGCTGCTGGTTTAGGGATGTTTAGTTGGTAGCAGGCTGTCTATGCAATCAAAAAGGGATTGTTAATCTCATAAACTCCTAACCTCTAAATGCTTTAAGCCTTTAAGTTTTAACCCTTTTGCAGTATCAATGTGTTGGTTTTTTCCATGGACTATATTCATAATGTTTAACTCTTTTTCTTTAATTGATCTTACCGTTGTATTCAGGATGATGAGTGATTATTCAGTAGAGACTATAAATGATGGGCTTAGCGAGTTCAACGTCGTGTTCAACGGTCCAAAAGAGAGTATGTTGAAGCAACTTGTCACTTGTTTAGTTCGTTACAGTTCGCACTATCCTTGCTTCCCTTCTTCCTTACCATTTTTTTTATATATATATTACTTGATCACAAGAAAATGTCCTCATGGACATGTATGCAACTTGTGTGATATTTTTATTTGAGGTTCTAGGTTAGCTATTCATGGTTTCTAATTTTTTTTGAAAAAGAACTCTTACGTTCGTTGTGGTGACTATAGGTCTCTATGAAGGTGGGGTGTGGAAAGTCCATGTTGAGCTTCCAGATGGCTATCCTTATAAGTCCCCTTCCATTGGGTTTATAAACAAAATATTCCACCCAAATGTTGATGAACTGTGAGTTTACTCCTATTCCTAGAGCATATGGAAAGGTATTCCCTGATAGCTGTTGATCTGAGTGAATGCTTATTAGTTATGTCTTAAATTATTCTTACAATCTTCAGGTCTGGCTCGGTGTGCTTGGATGTTATCAACCAATCATGGAGTCCTATGTTTGGTAATCATCACTTTAAAATTTACTTCGTACAGAGTATTTTACAAGGCTTTGATTGCTTTCAGTTTTTTGTTTTCATTTTGACTCCAAAACACGAATGACTCTTGTTGTTGGCTTGGTGCAGATTTACTAAATGTGTTTGAAGTCTTTCTTCCACAACTTCTGTTGTATCCTAATGCTTCAGATCCTCTTAATGGTGATGCTGCTTCATTAATGATGAAGGATAGACAACAGTATGAACAGAAGGTCAAAGGTAAGATACTTCCCTAATCAGCATTTTATCTTTCTGCTCTTTCCTGATGAAATGACGTATTCTATCATTTTGATCTAGATTTCAGCTTTTTTTACCCTTTATTCTTGCCTGTTTGTATGTGCTGATTTGGTAGATTCCTGGGATAGGGGGAGATCTACTGGATGACTTGAATGGAGTATGAAATAAAGTCTTCCACTTTTAGATGAGGGTTATTGGAGAAGAGAGAAAACAGAGGAGAGAGGGGGGAGGGGGGGGAGGGGGGAAGTTAGAACTCAAATTTGAGTGGACTTTTGCCTTGAAACCTCCCGCCAAATTTTGAAAACATGGAGTTGGTCATCTGGATTTTTGTAAAACCAACCTTGTTTTATTTCTCTGGAGTCTGGAAGATATATGTTGTCCTCTTAACGTTGTTTTTACTCCTAAATGAAAGTGGAGAGTTGGGATTATGAGGAGTTCTGAAAAAGCCAAAGGAGGCCAAAGATTACTTGTGTGGAGGAAGTTAAAAATGATATTAGGAGAGATTGGGTTTGCATTAACATCTACCACTTGATAGAAGTGAATGGAGGAAGAGGATCTTTGTGGACAACCACGGGAGATTAAATCTTGGTTATGCAGCTGACCTCATCCTTTTGGGATTATGGTTCTGGTGTTGTTGTATTGTTTTACTCTAGGATCTTTTACCCATGAACTATGGTTGAAGAACCCAAGTCTTATGTTCAATATTGTCAAGAATTCAAGATAAACCTTCCATTATCTCATATCAAGGGTCGAATTTAGATGTATAAGGCCTTTTTCTTTGTTGCAGAGAAGTTGTTTACATTAAGACCCTTGATTAGGAACAAAAATGATTGATGTACATCAAAAGGAATAAGTAACGAATGTGTTAATGAGACATGTGATTTTGCCCATTGTATAATCCACTAGTGAAAATTGCTAGTGGCTTCTTCTGACTTCCCTCTGTTGAAAATTAAGTTAAGAAGGATTGAAGATGGAGGATACTGTAACAAAAAGGAATTTTCTTGCATATGCTTACTTACTTTGCCAAACAACAGAGCCCTTGCCTGTCGGGAAATCTGGAATCACAAGTACACACCAATGTGGTGGTTTGAGAGTGAATACAACCCTTTTTCTCCCCGGCTTGTTGGGAGGGTAGGGTGCTTATAACTATTTGTTCTTAGTAACAGTGGCCTTTTCGTAATATATTTAAAGAAAATGAGAGTTGAAAACACCAAGGGCAGAATCGGGCTGATGCATACCATGAAGCTCACTAAGACTATATACTAGGGGCGTGGAAAAGCAGCTAATGATAGTAAACTGATGTTAATGACCAGCCTTAAGTGTCTTATTTTATAGGTTACACCTCTTTCTGATATGTCGCCAACTTAATACTTCATATCAATCATTTAATGTTATTGGTTAATGTGGATATTATGTGATAATCATAGATTACAAAATATAATGTGGGAGATAAAATGGAACAGTTACGAAATCTACCCTTGTACAGTTTTTACTGAGTGCTGAAAAAGGAAATGGTGTATGTTCAATTCTTCTGATGATTCTTTGTATACTTAATTCAGAATATTGTGATCGTTATGCAAAGAAAGAGAACATCAGTAACTCTGATGCGGAAGATGAAAGTGAGGAGGAGGATATCAGTGACGGGCGGTGCACATCAAGTGACGATGAACTTGCTGGACATGCAGACCCATAATTAAAAGATAAGCATACGGGGACTAAGTTAATATTCCGCTTTTACCCTTCTGTTCAATCATTTGCTGTATCATGTTTTAGTTTAGGATCATAGTGATAGATTAACTCTCTTAAGTCATTTTCAGCTTACTAATTCATTTGTTTTAGTACACTAAGATTAACTTTGAGATACAATTTGATGGACATGATCATCTGGACAGAATTTTAATGTGTGAATTTGATTTTATAACATCGGAGTTTGATTTATTCGAATTTAG AAAAAGAGCTGATTTTACACGTTGCACGACATACTTATCACCACGTGAACCCTTTAACATGTCGACATTTGATCATTCCTTAATTAATTCCTTCTCTATCCCCTACTTTTTTTAATCAACCTCCTTTTATACCTTTCTCTTTTTCTCTCTTTTTTCCCTCTCCTCCCCTTTTTCTTTCATCAACAACAAAGAACAACAACAAAGATTGCATTTTACCTTTTGATATTTAAACCCACGTAATTCCTTTCACAATCTGGGTGTTCGTCAATTTGTAATCATCTTGTTTGACAGATCAATTTGGCACAAGCTTGACACATTTGATTACTATGTCTTCACCAAGTAAGAGAAGAGAGATGGATGTTATGAAGCTGATGATGAGTGATTATTCAGTAGAGACTATAAATGATGGGCTTAGCGAGTTCAACGTCGTGTTCAACGGTCCAAAAGAGAGTCTCTATGAAGGTGGGGTGTGGAAAGTCCATGTTGAGCTTCCAGATGGCTATCCTTATAAGTCCCCTTCCATTGGGTTTATAAACAAAATATTCCACCCAAATGTTGATGAACTGTCTGGCTCGGTGTGCTTGGATGTTATCAACCAATCATGGAGTCCTATGTTTGATTTACTAAATGTGTTTGAAGTCTTTCTTCCACAACTTCTGTTGTATCCTAATGCTTCAGATCCTCTTAATGGTGATGCTGCTTCATTAATGATGAAGGATAGACAACAGTATGAACAGAAGGTCAAAGAATATTGTGATCGTTATGCAAAGAAAGAGAACATCAGTAACTCTGATGCGGAAGATGAAAGTGAGGAGGAGGATATCAGTGACGGGCGGTGCACATCAAGTGACGATGAACTTGCTGGACATGCAGACCCATAATTAAAAGATAAGCATACGGGGACTAAGTTAATATTCCGCTTTTACCCTTCTGTTCAATCATTTGCTGTATCATGTTTTAGTTTAGGATCATAGTGATAGATTAACTCTCTTAAGTCATTTTCAGCTTACTAATTCATTTGTTTTAGTACACTAAGATTAACTTTGAGATACAATTTGATGGACATGATCATCTGGACAGAATTTTAATGTGTGAATTTGATTTTATAACATCGGAGTTTGATTTATTCGAATTTAG ATGTCTTCACCAAGTAAGAGAAGAGAGATGGATGTTATGAAGCTGATGATGAGTGATTATTCAGTAGAGACTATAAATGATGGGCTTAGCGAGTTCAACGTCGTGTTCAACGGTCCAAAAGAGAGTCTCTATGAAGGTGGGGTGTGGAAAGTCCATGTTGAGCTTCCAGATGGCTATCCTTATAAGTCCCCTTCCATTGGGTTTATAAACAAAATATTCCACCCAAATGTTGATGAACTGTCTGGCTCGGTGTGCTTGGATGTTATCAACCAATCATGGAGTCCTATGTTTGATTTACTAAATGTGTTTGAAGTCTTTCTTCCACAACTTCTGTTGTATCCTAATGCTTCAGATCCTCTTAATGGTGATGCTGCTTCATTAATGATGAAGGATAGACAACAGTATGAACAGAAGGTCAAAGAATATTGTGATCGTTATGCAAAGAAAGAGAACATCAGTAACTCTGATGCGGAAGATGAAAGTGAGGAGGAGGATATCAGTGACGGGCGGTGCACATCAAGTGACGATGAACTTGCTGGACATGCAGACCCATAA MSSPSKRREMDVMKLMMSDYSVETINDGLSEFNVVFNGPKESLYEGGVWKVHVELPDGYPYKSPSIGFINKIFHPNVDELSGSVCLDVINQSWSPMFDLLNVFEVFLPQLLLYPNASDPLNGDAASLMMKDRQQYEQKVKEYCDRYAKKENISNSDAEDESEEEDISDGRCTSSDDELAGHADP Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo25261.1 vs. NCBI nr
Match: gi|902165993|gb|KNA07187.1| (hypothetical protein SOVF_174190 [Spinacia oleracea]) HSP 1 Score: 354.0 bits (907), Expect = 1.600e-94 Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1
BLAST of Spo25261.1 vs. NCBI nr
Match: gi|731335441|ref|XP_010678729.1| (PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 340.1 bits (871), Expect = 2.400e-90 Identity = 167/184 (90.76%), Postives = 176/184 (95.65%), Query Frame = 1
BLAST of Spo25261.1 vs. NCBI nr
Match: gi|661873575|emb|CDP20894.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 328.6 bits (841), Expect = 7.200e-87 Identity = 160/184 (86.96%), Postives = 171/184 (92.93%), Query Frame = 1
BLAST of Spo25261.1 vs. NCBI nr
Match: gi|590663235|ref|XP_007036155.1| (Ubiquitin-conjugating enzyme E2 5 isoform 1 [Theobroma cacao]) HSP 1 Score: 325.9 bits (834), Expect = 4.700e-86 Identity = 157/184 (85.33%), Postives = 174/184 (94.57%), Query Frame = 1
BLAST of Spo25261.1 vs. NCBI nr
Match: gi|359491601|ref|XP_002280126.2| (PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa isoform X1 [Vitis vinifera]) HSP 1 Score: 325.1 bits (832), Expect = 7.900e-86 Identity = 156/184 (84.78%), Postives = 174/184 (94.57%), Query Frame = 1
BLAST of Spo25261.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QIW6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_174190 PE=3 SV=1) HSP 1 Score: 354.0 bits (907), Expect = 1.100e-94 Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1
BLAST of Spo25261.1 vs. UniProtKB/TrEMBL
Match: A0A068VJY1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00003010001 PE=3 SV=1) HSP 1 Score: 328.6 bits (841), Expect = 5.000e-87 Identity = 160/184 (86.96%), Postives = 171/184 (92.93%), Query Frame = 1
BLAST of Spo25261.1 vs. UniProtKB/TrEMBL
Match: A0A061FU20_THECC (Ubiquitin-conjugating enzyme E2 5 isoform 1 OS=Theobroma cacao GN=TCM_012016 PE=3 SV=1) HSP 1 Score: 325.9 bits (834), Expect = 3.200e-86 Identity = 157/184 (85.33%), Postives = 174/184 (94.57%), Query Frame = 1
BLAST of Spo25261.1 vs. UniProtKB/TrEMBL
Match: D7SHV4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g07960 PE=3 SV=1) HSP 1 Score: 325.1 bits (832), Expect = 5.500e-86 Identity = 156/184 (84.78%), Postives = 174/184 (94.57%), Query Frame = 1
BLAST of Spo25261.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C9Z0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g116640 PE=3 SV=1) HSP 1 Score: 323.9 bits (829), Expect = 1.200e-85 Identity = 158/175 (90.29%), Postives = 167/175 (95.43%), Query Frame = 1
BLAST of Spo25261.1 vs. ExPASy Swiss-Prot
Match: UBC4_WHEAT (Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4 PE=1 SV=1) HSP 1 Score: 274.6 bits (701), Expect = 7.700e-73 Identity = 136/185 (73.51%), Postives = 159/185 (85.95%), Query Frame = 1
BLAST of Spo25261.1 vs. ExPASy Swiss-Prot
Match: UBC4_ARATH (Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana GN=UBC4 PE=2 SV=2) HSP 1 Score: 270.8 bits (691), Expect = 1.100e-71 Identity = 137/187 (73.26%), Postives = 154/187 (82.35%), Query Frame = 1
BLAST of Spo25261.1 vs. ExPASy Swiss-Prot
Match: UBC6_ARATH (Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana GN=UBC6 PE=2 SV=2) HSP 1 Score: 264.6 bits (675), Expect = 8.000e-70 Identity = 128/184 (69.57%), Postives = 152/184 (82.61%), Query Frame = 1
BLAST of Spo25261.1 vs. ExPASy Swiss-Prot
Match: UBC5_ARATH (Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2) HSP 1 Score: 263.1 bits (671), Expect = 2.300e-69 Identity = 127/185 (68.65%), Postives = 152/185 (82.16%), Query Frame = 1
BLAST of Spo25261.1 vs. ExPASy Swiss-Prot
Match: UBC8_SCHPO (Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubc8 PE=3 SV=1) HSP 1 Score: 229.9 bits (585), Expect = 2.200e-59 Identity = 114/185 (61.62%), Postives = 143/185 (77.30%), Query Frame = 1
BLAST of Spo25261.1 vs. TAIR (Arabidopsis)
Match: AT5G41340.1 (ubiquitin conjugating enzyme 4) HSP 1 Score: 270.8 bits (691), Expect = 6.300e-73 Identity = 137/187 (73.26%), Postives = 154/187 (82.35%), Query Frame = 1
BLAST of Spo25261.1 vs. TAIR (Arabidopsis)
Match: AT2G46030.1 (ubiquitin-conjugating enzyme 6) HSP 1 Score: 264.6 bits (675), Expect = 4.500e-71 Identity = 128/184 (69.57%), Postives = 152/184 (82.61%), Query Frame = 1
BLAST of Spo25261.1 vs. TAIR (Arabidopsis)
Match: AT1G63800.1 (ubiquitin-conjugating enzyme 5) HSP 1 Score: 263.1 bits (671), Expect = 1.300e-70 Identity = 127/185 (68.65%), Postives = 152/185 (82.16%), Query Frame = 1
BLAST of Spo25261.1 vs. TAIR (Arabidopsis)
Match: AT3G08690.1 (ubiquitin-conjugating enzyme 11) HSP 1 Score: 95.9 bits (237), Expect = 2.800e-20 Identity = 46/137 (33.58%), Postives = 74/137 (54.01%), Query Frame = 1
BLAST of Spo25261.1 vs. TAIR (Arabidopsis)
Match: AT2G02760.1 (ubiquiting-conjugating enzyme 2) HSP 1 Score: 94.7 bits (234), Expect = 6.200e-20 Identity = 44/149 (29.53%), Postives = 89/149 (59.73%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo25261.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo25261.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo25261.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo25261.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
|