Spo25403 (gene) | SpinachBase

Overview


Name	Spo25403
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Transmembrane and coiled-coil domains protein
Location	chr3 : 30648941 .. 30649507 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGCCAATTTCTACCTTCAACCAAATACTCGGACTGTCTCACAGTCGTCGGAATCTCAATCTGCACCGCAATAATCTGCGAAGCAATCTCCTACCTCTTAATCTACCGTACGAATTCCTACAAATCCCTAAAATCCTCCATCGACAAATCCTCAAAAAAACTCGAAACCTTGAAAACTCAAGATTCAATAAACAAGAACAAAACCAAGAAGAAGGATCGAGTAGAAACCAGTCTTAAAGACGCAAGCCGAGATCTGTCACTCTTCAAGTTCAAATCCGGCGCAGTCGTTGCGCTCGTTCTCTTCATGGTTTTCGGATTGCTCAACTCATTGTTTGACGGTAAAGCCGTGGCTAAAATTCCATTCGTCCCGATCAAACTTGTGCAGAAGATGAGCCACCGTAATCTTCCTGGCGATGATATGACGGATTGTTCAATGGCGTTTCTGTACTTGCTTTGTTCGGTTAGTATTCGTACTAATCTGCAGAAGTTTCTAGGATTTTCGCCGCCTCGTGGCGCTCCTAGTATGGGGCTTTTCCCTATGCCTGATCAGAAAACTAGTTAG

mRNA sequence

ATGGCGAGCCAATTTCTACCTTCAACCAAATACTCGGACTGTCTCACAGTCGTCGGAATCTCAATCTGCACCGCAATAATCTGCGAAGCAATCTCCTACCTCTTAATCTACCGTACGAATTCCTACAAATCCCTAAAATCCTCCATCGACAAATCCTCAAAAAAACTCGAAACCTTGAAAACTCAAGATTCAATAAACAAGAACAAAACCAAGAAGAAGGATCGAGTAGAAACCAGTCTTAAAGACGCAAGCCGAGATCTGTCACTCTTCAAGTTCAAATCCGGCGCAGTCGTTGCGCTCGTTCTCTTCATGGTTTTCGGATTGCTCAACTCATTGTTTGACGGTAAAGCCGTGGCTAAAATTCCATTCGTCCCGATCAAACTTGTGCAGAAGATGAGCCACCGTAATCTTCCTGGCGATGATATGACGGATTGTTCAATGGCGTTTCTGTACTTGCTTTGTTCGGTTAGTATTCGTACTAATCTGCAGAAGTTTCTAGGATTTTCGCCGCCTCGTGGCGCTCCTAGTATGGGGCTTTTCCCTATGCCTGATCAGAAAACTAGTTAG

Coding sequence (CDS)

ATGGCGAGCCAATTTCTACCTTCAACCAAATACTCGGACTGTCTCACAGTCGTCGGAATCTCAATCTGCACCGCAATAATCTGCGAAGCAATCTCCTACCTCTTAATCTACCGTACGAATTCCTACAAATCCCTAAAATCCTCCATCGACAAATCCTCAAAAAAACTCGAAACCTTGAAAACTCAAGATTCAATAAACAAGAACAAAACCAAGAAGAAGGATCGAGTAGAAACCAGTCTTAAAGACGCAAGCCGAGATCTGTCACTCTTCAAGTTCAAATCCGGCGCAGTCGTTGCGCTCGTTCTCTTCATGGTTTTCGGATTGCTCAACTCATTGTTTGACGGTAAAGCCGTGGCTAAAATTCCATTCGTCCCGATCAAACTTGTGCAGAAGATGAGCCACCGTAATCTTCCTGGCGATGATATGACGGATTGTTCAATGGCGTTTCTGTACTTGCTTTGTTCGGTTAGTATTCGTACTAATCTGCAGAAGTTTCTAGGATTTTCGCCGCCTCGTGGCGCTCCTAGTATGGGGCTTTTCCCTATGCCTGATCAGAAAACTAGTTAG

Protein sequence

MASQFLPSTKYSDCLTVVGISICTAIICEAISYLLIYRTNSYKSLKSSIDKSSKKLETLKTQDSINKNKTKKKDRVETSLKDASRDLSLFKFKSGAVVALVLFMVFGLLNSLFDGKAVAKIPFVPIKLVQKMSHRNLPGDDMTDCSMAFLYLLCSVSIRTNLQKFLGFSPPRGAPSMGLFPMPDQKTS

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo25403.1	Spo25403.1	mRNA

Homology

[Close]

BLAST of Spo25403.1 vs. NCBI nr
Match: gi|902139713|gb|KNA04591.1| (hypothetical protein SOVF_198270 [Spinacia oleracea])

HSP 1 Score: 359.4 bits (921), Expect = 3.900e-96
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 1


		  
Query: 1   MASQFLPSTKYSDCLTVVGISICTAIICEAISYLLIYRTNSYKSLKSSIDKSSKKLETLK 60
           MASQFLPSTKYSDCLTVVGISICTAIICEAISYLLIYRTNSYKSLKSSIDKSSKKLETLK
Sbjct: 1   MASQFLPSTKYSDCLTVVGISICTAIICEAISYLLIYRTNSYKSLKSSIDKSSKKLETLK 60

Query: 61  TQDSINKNKTKKKDRVETSLKDASRDLSLFKFKSGAVVALVLFMVFGLLNSLFDGKAVAK 120
           TQDSINKNKTKKKDRVETSLKDASRDLSLFKFKSGAVVALVLFMVFGLLNSLFDGKAVAK
Sbjct: 61  TQDSINKNKTKKKDRVETSLKDASRDLSLFKFKSGAVVALVLFMVFGLLNSLFDGKAVAK 120

Query: 121 IPFVPIKLVQKMSHRNLPGDDMTDCSMAFLYLLCSVSIRTNLQKFLGFSPPRGAPSMGLF 180
           IPFVPIKLVQKMSHRNLPGDDMTDCSMAFLYLLCSVSIRTNLQKFLGFSPPRGAPSMGLF
Sbjct: 121 IPFVPIKLVQKMSHRNLPGDDMTDCSMAFLYLLCSVSIRTNLQKFLGFSPPRGAPSMGLF 180

Query: 181 PMPDQKTS 189
           PMPDQKTS
Sbjct: 181 PMPDQKTS 188

[Close]

BLAST of Spo25403.1 vs. NCBI nr
Match: gi|731364238|ref|XP_010693864.1| (PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 336.3 bits (861), Expect = 3.500e-89
Identity = 174/188 (92.55%), Postives = 182/188 (96.81%), Query Frame = 1


		  
Query: 1   MASQFLPSTKYSDCLTVVGISICTAIICEAISYLLIYRTNSYKSLKSSIDKSSKKLETLK 60
           MASQFL S KYSD L VVGIS+CTAIICEAISYLLIY+TNSYKSLKS+IDKSSKKLETLK
Sbjct: 1   MASQFLISCKYSDSLAVVGISVCTAIICEAISYLLIYQTNSYKSLKSAIDKSSKKLETLK 60

Query: 61  TQDSINKNKTKKKDRVETSLKDASRDLSLFKFKSGAVVALVLFMVFGLLNSLFDGKAVAK 120
           TQDS+ KNKTKKKDRVETSLKDASRDLSLFKFKSGAVVALVLFMVFG LNSLFDGKAVAK
Sbjct: 61  TQDSVTKNKTKKKDRVETSLKDASRDLSLFKFKSGAVVALVLFMVFGFLNSLFDGKAVAK 120

Query: 121 IPFVPIKLVQKMSHRNLPGDDMTDCSMAFLYLLCSVSIRTNLQKFLGFSPPRGAPSMGLF 180
           IPFVP+KL+QKMSHRNLPGDDMTDCSMAFLYLLCSVSIRTNLQKFLGFSPPRGAP+MGLF
Sbjct: 121 IPFVPVKLLQKMSHRNLPGDDMTDCSMAFLYLLCSVSIRTNLQKFLGFSPPRGAPNMGLF 180

Query: 181 PMPDQKTS 189
           PMPDQKT+
Sbjct: 181 PMPDQKTN 188

[Close]

BLAST of Spo25403.1 vs. NCBI nr
Match: gi|747064450|ref|XP_011078807.1| (PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Sesamum indicum])

HSP 1 Score: 293.5 bits (750), Expect = 2.600e-76
Identity = 155/196 (79.08%), Postives = 173/196 (88.27%), Query Frame = 1


		  
Query: 1   MASQFLPSTKYSDCLTVVGISICTAIICEAISYLLIYRTNSYKSLKSSIDKSSKKLETLK 60
           MAS  L + +YSD LTVVGISICTA++CEAIS+LLIYRT SYKSLKS+IDK+SKKLET+K
Sbjct: 1   MASALLSALRYSDSLTVVGISICTAVVCEAISWLLIYRTASYKSLKSTIDKASKKLETMK 60

Query: 61  TQDSIN--------KNKTKKKDRVETSLKDASRDLSLFKFKSGAVVALVLFMVFGLLNSL 120
           + DS +         +KTKK DRVETSLK++SRDLS+FKFKSGAVVALVLFMVFGLLNSL
Sbjct: 61  STDSTSASSNLLKKSSKTKKMDRVETSLKESSRDLSMFKFKSGAVVALVLFMVFGLLNSL 120

Query: 121 FDGKAVAKIPFVPIKLVQKMSHRNLPGDDMTDCSMAFLYLLCSVSIRTNLQKFLGFSPPR 180
           F+GKAVAKIPFVPI+LVQKMSHR LPGDDMTDCSMAFLYLLCS+SIRTNLQKFLGFSPPR
Sbjct: 121 FEGKAVAKIPFVPIRLVQKMSHRGLPGDDMTDCSMAFLYLLCSISIRTNLQKFLGFSPPR 180

Query: 181 GAPSMGLFPMPDQKTS 189
           GA   GLFPMPD K+S
Sbjct: 181 GAAGAGLFPMPDPKSS 196

[Close]

BLAST of Spo25403.1 vs. NCBI nr
Match: gi|568815658|ref|NP_001275630.1| (uncharacterized protein LOC102597373 [Solanum tuberosum])

HSP 1 Score: 288.1 bits (736), Expect = 1.100e-74
Identity = 148/192 (77.08%), Postives = 169/192 (88.02%), Query Frame = 1


		  
Query: 2   ASQFLPSTKYSDCLTVVGISICTAIICEAISYLLIYRTNSYKSLKSSIDKSSKKLETLKT 61
           A+ F  +TKYSD LT+VGISICTAI+CEAISYLLIYRT SYKSLKS+IDK+SKKLET+KT
Sbjct: 3   AAGFFSNTKYSDSLTLVGISICTAIVCEAISYLLIYRTTSYKSLKSTIDKASKKLETMKT 62

Query: 62  QDSI-----NKNKTKKKDRVETSLKDASRDLSLFKFKSGAVVALVLFMVFGLLNSLFDGK 121
           Q+ +      K+KTKK DRVETSLK+++RDLSLFKFKSG VVA+VLFMVFG LNSLF+GK
Sbjct: 63  QEPVPSVLTKKSKTKKIDRVETSLKESTRDLSLFKFKSGFVVAVVLFMVFGFLNSLFEGK 122

Query: 122 AVAKIPFVPIKLVQKMSHRNLPGDDMTDCSMAFLYLLCSVSIRTNLQKFLGFSPPRGAPS 181
            VAK+PF+P +LVQKMSHR LPGDDMTDCSMAFLY LCS+SIRTNLQKFLGFSPPRG+  
Sbjct: 123 VVAKLPFIPFRLVQKMSHRGLPGDDMTDCSMAFLYFLCSISIRTNLQKFLGFSPPRGSAG 182

Query: 182 MGLFPMPDQKTS 189
            GLFPMPD KT+
Sbjct: 183 AGLFPMPDPKTN 194

[Close]

BLAST of Spo25403.1 vs. NCBI nr
Match: gi|527209540|gb|EPS74233.1| (hypothetical protein M569_00528 [Genlisea aurea])

HSP 1 Score: 284.3 bits (726), Expect = 1.600e-73
Identity = 151/194 (77.84%), Postives = 169/194 (87.11%), Query Frame = 1


		  
Query: 1   MASQFLPSTKYSDCLTVVGISICTAIICEAISYLLIYRTNSYKSLKSSIDKSSKKLETLK 60
           MA+Q L   KY D LTVVGIS CTA++CEAIS+LLIYRT+SYKSL S+IDK+SKKLET+K
Sbjct: 1   MAAQVLSGAKYGDALTVVGISFCTAVVCEAISWLLIYRTSSYKSLMSTIDKASKKLETMK 60

Query: 61  TQDSINK-----NKTKKKDRVETSLKDASRDLSLFKFKSGAVVALVLFMVFGLLNSLFDG 120
           T D+ +      +KTKK DRVETSLK++SRDLS+FKFKSGAVVALVLFMVFGLLNSLF+G
Sbjct: 61  TSDANSNILKKSSKTKKMDRVETSLKESSRDLSMFKFKSGAVVALVLFMVFGLLNSLFEG 120

Query: 121 KAVAKIPFVPIKLVQKMSHRNLPGDDMTDCSMAFLYLLCSVSIRTNLQKFLGFSPPRGAP 180
           KAVAKIPFVPI+LVQKMSHR LPGDDMTDCSMAFLYLLCS+SIRTNLQK LGF+PPRGA 
Sbjct: 121 KAVAKIPFVPIRLVQKMSHRGLPGDDMTDCSMAFLYLLCSISIRTNLQKLLGFAPPRGAA 180

Query: 181 SMG-LFPMPDQKTS 189
             G LFPMPD K S
Sbjct: 181 GAGLLFPMPDPKAS 194

[Close]

BLAST of Spo25403.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QDH5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_198270 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 2.700e-96
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 1


		  
Query: 1   MASQFLPSTKYSDCLTVVGISICTAIICEAISYLLIYRTNSYKSLKSSIDKSSKKLETLK 60
           MASQFLPSTKYSDCLTVVGISICTAIICEAISYLLIYRTNSYKSLKSSIDKSSKKLETLK
Sbjct: 1   MASQFLPSTKYSDCLTVVGISICTAIICEAISYLLIYRTNSYKSLKSSIDKSSKKLETLK 60

Query: 61  TQDSINKNKTKKKDRVETSLKDASRDLSLFKFKSGAVVALVLFMVFGLLNSLFDGKAVAK 120
           TQDSINKNKTKKKDRVETSLKDASRDLSLFKFKSGAVVALVLFMVFGLLNSLFDGKAVAK
Sbjct: 61  TQDSINKNKTKKKDRVETSLKDASRDLSLFKFKSGAVVALVLFMVFGLLNSLFDGKAVAK 120

Query: 121 IPFVPIKLVQKMSHRNLPGDDMTDCSMAFLYLLCSVSIRTNLQKFLGFSPPRGAPSMGLF 180
           IPFVPIKLVQKMSHRNLPGDDMTDCSMAFLYLLCSVSIRTNLQKFLGFSPPRGAPSMGLF
Sbjct: 121 IPFVPIKLVQKMSHRNLPGDDMTDCSMAFLYLLCSVSIRTNLQKFLGFSPPRGAPSMGLF 180

Query: 181 PMPDQKTS 189
           PMPDQKTS
Sbjct: 181 PMPDQKTS 188

[Close]

BLAST of Spo25403.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BFN8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g069000 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 2.500e-89
Identity = 174/188 (92.55%), Postives = 182/188 (96.81%), Query Frame = 1


		  
Query: 1   MASQFLPSTKYSDCLTVVGISICTAIICEAISYLLIYRTNSYKSLKSSIDKSSKKLETLK 60
           MASQFL S KYSD L VVGIS+CTAIICEAISYLLIY+TNSYKSLKS+IDKSSKKLETLK
Sbjct: 1   MASQFLISCKYSDSLAVVGISVCTAIICEAISYLLIYQTNSYKSLKSAIDKSSKKLETLK 60

Query: 61  TQDSINKNKTKKKDRVETSLKDASRDLSLFKFKSGAVVALVLFMVFGLLNSLFDGKAVAK 120
           TQDS+ KNKTKKKDRVETSLKDASRDLSLFKFKSGAVVALVLFMVFG LNSLFDGKAVAK
Sbjct: 61  TQDSVTKNKTKKKDRVETSLKDASRDLSLFKFKSGAVVALVLFMVFGFLNSLFDGKAVAK 120

Query: 121 IPFVPIKLVQKMSHRNLPGDDMTDCSMAFLYLLCSVSIRTNLQKFLGFSPPRGAPSMGLF 180
           IPFVP+KL+QKMSHRNLPGDDMTDCSMAFLYLLCSVSIRTNLQKFLGFSPPRGAP+MGLF
Sbjct: 121 IPFVPVKLLQKMSHRNLPGDDMTDCSMAFLYLLCSVSIRTNLQKFLGFSPPRGAPNMGLF 180

Query: 181 PMPDQKTS 189
           PMPDQKT+
Sbjct: 181 PMPDQKTN 188

[Close]

BLAST of Spo25403.1 vs. UniProtKB/TrEMBL
Match: K7W5R9_SOLTU (Transmembrane and coiled-coil domains protein OS=Solanum tuberosum GN=PGSC0003DMG400011451 PE=2 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 7.700e-75
Identity = 148/192 (77.08%), Postives = 169/192 (88.02%), Query Frame = 1


		  
Query: 2   ASQFLPSTKYSDCLTVVGISICTAIICEAISYLLIYRTNSYKSLKSSIDKSSKKLETLKT 61
           A+ F  +TKYSD LT+VGISICTAI+CEAISYLLIYRT SYKSLKS+IDK+SKKLET+KT
Sbjct: 3   AAGFFSNTKYSDSLTLVGISICTAIVCEAISYLLIYRTTSYKSLKSTIDKASKKLETMKT 62

Query: 62  QDSI-----NKNKTKKKDRVETSLKDASRDLSLFKFKSGAVVALVLFMVFGLLNSLFDGK 121
           Q+ +      K+KTKK DRVETSLK+++RDLSLFKFKSG VVA+VLFMVFG LNSLF+GK
Sbjct: 63  QEPVPSVLTKKSKTKKIDRVETSLKESTRDLSLFKFKSGFVVAVVLFMVFGFLNSLFEGK 122

Query: 122 AVAKIPFVPIKLVQKMSHRNLPGDDMTDCSMAFLYLLCSVSIRTNLQKFLGFSPPRGAPS 181
            VAK+PF+P +LVQKMSHR LPGDDMTDCSMAFLY LCS+SIRTNLQKFLGFSPPRG+  
Sbjct: 123 VVAKLPFIPFRLVQKMSHRGLPGDDMTDCSMAFLYFLCSISIRTNLQKFLGFSPPRGSAG 182

Query: 182 MGLFPMPDQKTS 189
            GLFPMPD KT+
Sbjct: 183 AGLFPMPDPKTN 194

[Close]

BLAST of Spo25403.1 vs. UniProtKB/TrEMBL
Match: K4D2E1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 7.700e-75
Identity = 148/192 (77.08%), Postives = 169/192 (88.02%), Query Frame = 1


		  
Query: 2   ASQFLPSTKYSDCLTVVGISICTAIICEAISYLLIYRTNSYKSLKSSIDKSSKKLETLKT 61
           A+ F  +TKYSD LT+VGISICTAI+CEAISYLLIYRT SYKSLKS+IDK+SKKLET+KT
Sbjct: 3   AAGFFSNTKYSDSLTLVGISICTAIVCEAISYLLIYRTTSYKSLKSTIDKASKKLETMKT 62

Query: 62  QDSI-----NKNKTKKKDRVETSLKDASRDLSLFKFKSGAVVALVLFMVFGLLNSLFDGK 121
           Q+ +      K+KTKK DRVETSLK+++RDLSLFKFKSG VVA+VLFMVFG LNSLF+GK
Sbjct: 63  QEPVPSVLTKKSKTKKIDRVETSLKESTRDLSLFKFKSGFVVAVVLFMVFGFLNSLFEGK 122

Query: 122 AVAKIPFVPIKLVQKMSHRNLPGDDMTDCSMAFLYLLCSVSIRTNLQKFLGFSPPRGAPS 181
            VAK+PF+P +LVQKMSHR LPGDDMTDCSMAFLY LCS+SIRTNLQKFLGFSPPRG+  
Sbjct: 123 VVAKLPFIPFRLVQKMSHRGLPGDDMTDCSMAFLYFLCSISIRTNLQKFLGFSPPRGSAG 182

Query: 182 MGLFPMPDQKTS 189
            GLFPMPD KT+
Sbjct: 183 AGLFPMPDPKTN 194

[Close]

BLAST of Spo25403.1 vs. UniProtKB/TrEMBL
Match: A0A0V0HEI2_SOLCH (Putative transmembrane and coiled-coil domain-containing protein 1-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 7.700e-75
Identity = 148/192 (77.08%), Postives = 169/192 (88.02%), Query Frame = 1


		  
Query: 2   ASQFLPSTKYSDCLTVVGISICTAIICEAISYLLIYRTNSYKSLKSSIDKSSKKLETLKT 61
           A+ F  +TKYSD LT+VGISICTAI+CEAISYLLIYRT SYKSLKS+IDK+SKKLET+KT
Sbjct: 3   AAGFFSNTKYSDSLTLVGISICTAIVCEAISYLLIYRTTSYKSLKSTIDKASKKLETMKT 62

Query: 62  QDSI-----NKNKTKKKDRVETSLKDASRDLSLFKFKSGAVVALVLFMVFGLLNSLFDGK 121
           Q+ +      K+KTKK DRVETSLK+++RDLSLFKFKSG VVA+VLFMVFG LNSLF+GK
Sbjct: 63  QEPVPSVLTKKSKTKKIDRVETSLKESTRDLSLFKFKSGFVVAVVLFMVFGFLNSLFEGK 122

Query: 122 AVAKIPFVPIKLVQKMSHRNLPGDDMTDCSMAFLYLLCSVSIRTNLQKFLGFSPPRGAPS 181
            VAK+PF+P +LVQKMSHR LPGDDMTDCSMAFLY LCS+SIRTNLQKFLGFSPPRG+  
Sbjct: 123 VVAKLPFIPFRLVQKMSHRGLPGDDMTDCSMAFLYFLCSISIRTNLQKFLGFSPPRGSAG 182

Query: 182 MGLFPMPDQKTS 189
            GLFPMPD KT+
Sbjct: 183 AGLFPMPDPKTN 194

[Close]

BLAST of Spo25403.1 vs. ExPASy Swiss-Prot
Match: TMCO1_PONAB (Transmembrane and coiled-coil domain-containing protein 1 OS=Pongo abelii GN=TMCO1 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.200e-38
Identity = 81/169 (47.93%), Postives = 117/169 (69.23%), Query Frame = 1


		  
Query: 8   STKYSDCLTVVGISICTAIICEAISYLLIYRTNSYKSLKSSIDKSSKKLETLKTQ--DSI 67
           ST ++D L +V IS+CTA++ E I+++L+YRT+ YK LK+ ++K SKKLE  K    +S 
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESA 61

Query: 68  NKNKTKKKDRVETSLKDASRDLSLFKFKSGAVVALVLFMVFGLLNSLFDGKAVAKIPFVP 127
            + + KK +R E  LK+ +RDLS+ + KS   +      + G+ NS+FDG+ VAK+PF P
Sbjct: 62  GRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTP 121

Query: 128 IKLVQKMSHRNLPGDDMTDCSMAFLYLLCSVSIRTNLQKFLGFSPPRGA 175
           +  +Q +SHRNL GDD TDCS  FLY+LC++SIR N+QK LG +P R A
Sbjct: 122 LSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAA 170

[Close]

BLAST of Spo25403.1 vs. ExPASy Swiss-Prot
Match: TMCO1_PIG (Transmembrane and coiled-coil domains protein 1 OS=Sus scrofa GN=TMCO1 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.200e-38
Identity = 81/169 (47.93%), Postives = 117/169 (69.23%), Query Frame = 1


		  
Query: 8   STKYSDCLTVVGISICTAIICEAISYLLIYRTNSYKSLKSSIDKSSKKLETLKTQ--DSI 67
           ST ++D L +V IS+CTA++ E I+++L+YRT+ YK LK+ ++K SKKLE  K    +S 
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESA 61

Query: 68  NKNKTKKKDRVETSLKDASRDLSLFKFKSGAVVALVLFMVFGLLNSLFDGKAVAKIPFVP 127
            + + KK +R E  LK+ +RDLS+ + KS   +      + G+ NS+FDG+ VAK+PF P
Sbjct: 62  GRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTP 121

Query: 128 IKLVQKMSHRNLPGDDMTDCSMAFLYLLCSVSIRTNLQKFLGFSPPRGA 175
           +  +Q +SHRNL GDD TDCS  FLY+LC++SIR N+QK LG +P R A
Sbjct: 122 LSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAA 170

[Close]

BLAST of Spo25403.1 vs. ExPASy Swiss-Prot
Match: TMCO1_MOUSE (Transmembrane and coiled-coil domain-containing protein 1 OS=Mus musculus GN=Tmco1 PE=1 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.200e-38
Identity = 81/169 (47.93%), Postives = 117/169 (69.23%), Query Frame = 1


		  
Query: 8   STKYSDCLTVVGISICTAIICEAISYLLIYRTNSYKSLKSSIDKSSKKLETLKTQ--DSI 67
           ST ++D L +V IS+CTA++ E I+++L+YRT+ YK LK+ ++K SKKLE  K    +S 
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESA 61

Query: 68  NKNKTKKKDRVETSLKDASRDLSLFKFKSGAVVALVLFMVFGLLNSLFDGKAVAKIPFVP 127
            + + KK +R E  LK+ +RDLS+ + KS   +      + G+ NS+FDG+ VAK+PF P
Sbjct: 62  GRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTP 121

Query: 128 IKLVQKMSHRNLPGDDMTDCSMAFLYLLCSVSIRTNLQKFLGFSPPRGA 175
           +  +Q +SHRNL GDD TDCS  FLY+LC++SIR N+QK LG +P R A
Sbjct: 122 LSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAA 170

[Close]

BLAST of Spo25403.1 vs. ExPASy Swiss-Prot
Match: TMCO1_HUMAN (Transmembrane and coiled-coil domain-containing protein 1 OS=Homo sapiens GN=TMCO1 PE=1 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.200e-38
Identity = 81/169 (47.93%), Postives = 117/169 (69.23%), Query Frame = 1


		  
Query: 8   STKYSDCLTVVGISICTAIICEAISYLLIYRTNSYKSLKSSIDKSSKKLETLKTQ--DSI 67
           ST ++D L +V IS+CTA++ E I+++L+YRT+ YK LK+ ++K SKKLE  K    +S 
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESA 61

Query: 68  NKNKTKKKDRVETSLKDASRDLSLFKFKSGAVVALVLFMVFGLLNSLFDGKAVAKIPFVP 127
            + + KK +R E  LK+ +RDLS+ + KS   +      + G+ NS+FDG+ VAK+PF P
Sbjct: 62  GRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTP 121

Query: 128 IKLVQKMSHRNLPGDDMTDCSMAFLYLLCSVSIRTNLQKFLGFSPPRGA 175
           +  +Q +SHRNL GDD TDCS  FLY+LC++SIR N+QK LG +P R A
Sbjct: 122 LSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAA 170

[Close]

BLAST of Spo25403.1 vs. ExPASy Swiss-Prot
Match: TMCO1_BOVIN (Transmembrane and coiled-coil domain-containing protein 1 OS=Bos taurus GN=TMCO1 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.200e-38
Identity = 81/169 (47.93%), Postives = 117/169 (69.23%), Query Frame = 1


		  
Query: 8   STKYSDCLTVVGISICTAIICEAISYLLIYRTNSYKSLKSSIDKSSKKLETLKTQ--DSI 67
           ST ++D L +V IS+CTA++ E I+++L+YRT+ YK LK+ ++K SKKLE  K    +S 
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESA 61

Query: 68  NKNKTKKKDRVETSLKDASRDLSLFKFKSGAVVALVLFMVFGLLNSLFDGKAVAKIPFVP 127
            + + KK +R E  LK+ +RDLS+ + KS   +      + G+ NS+FDG+ VAK+PF P
Sbjct: 62  GRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTP 121

Query: 128 IKLVQKMSHRNLPGDDMTDCSMAFLYLLCSVSIRTNLQKFLGFSPPRGA 175
           +  +Q +SHRNL GDD TDCS  FLY+LC++SIR N+QK LG +P R A
Sbjct: 122 LSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAA 170

[Close]

BLAST of Spo25403.1 vs. TAIR (Arabidopsis)
Match: AT3G12030.1 (Protein of unknown function DUF106, transmembrane)

HSP 1 Score: 269.6 bits (688), Expect = 1.400e-72
Identity = 144/187 (77.01%), Postives = 165/187 (88.24%), Query Frame = 1


		  
Query: 8   STKYSDCLTVVGISICTAIICEAISYLLIYRTNSYKSLKSSIDKSSKKLETLKTQD---- 67
           S KY+D LTVVGIS CTA++CEAIS++LIYRT+SYKSLK SIDK++KKLET+KT++    
Sbjct: 10  SFKYADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKYSIDKATKKLETMKTENPSSK 69

Query: 68  -SINKNKTKKKDRVETSLKDASRDLSLFKFKSGAVVALVLFMVFGLLNSLFDGKAVAKIP 127
            SI K+KTKK DRVETSLK++SRDLSLFKFKSGAVVALVLF+VFGLLNSLF+GK VAK+P
Sbjct: 70  LSIKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLP 129

Query: 128 FVPIKLVQKMSHRNLPGDDMTDCSMAFLYLLCSVSIRTNLQKFLGFSPPRGAPSM-GLFP 187
           F PI +V+KMSHR L GDD TDCSMAFLYLLCS+SIRTNLQKFLGFSPPRGA    GLFP
Sbjct: 130 FHPITIVKKMSHRGLKGDDPTDCSMAFLYLLCSISIRTNLQKFLGFSPPRGAAGAGGLFP 189

Query: 188 MPDQKTS 189
           MPD KT+
Sbjct: 190 MPDPKTN 196

[Close]

BLAST of Spo25403.1 vs. TAIR (Arabidopsis)
Match: AT5G06660.1 (Protein of unknown function DUF106, transmembrane)

HSP 1 Score: 267.3 bits (682), Expect = 7.100e-72
Identity = 143/187 (76.47%), Postives = 164/187 (87.70%), Query Frame = 1


		  
Query: 8   STKYSDCLTVVGISICTAIICEAISYLLIYRTNSYKSLKSSIDKSSKKLETLKTQDSINK 67
           S KY+D LTVVGIS CTA++CEAIS++LIYRT+SYKSLKSSIDK+SKKLET+KT +  +K
Sbjct: 10  SFKYADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKSSIDKASKKLETMKTDNPSSK 69

Query: 68  -----NKTKKKDRVETSLKDASRDLSLFKFKSGAVVALVLFMVFGLLNSLFDGKAVAKIP 127
                +KTKK DRVE+SLK++SRDLSLFKFKSGAVVALVLF+VFGLLNSLF+GK VAK+P
Sbjct: 70  LTNKKSKTKKIDRVESSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLP 129

Query: 128 FVPIKLVQKMSHRNLPGDDMTDCSMAFLYLLCSVSIRTNLQKFLGFSPPRGAPSM-GLFP 187
           F PI +V+KMSHR L GDD TDCSMAFLYLLCS+SIRTNLQKFLGFSPPRGA    GLFP
Sbjct: 130 FHPITIVRKMSHRGLKGDDSTDCSMAFLYLLCSISIRTNLQKFLGFSPPRGAAGAGGLFP 189

Query: 188 MPDQKTS 189
           MPD KT+
Sbjct: 190 MPDPKTN 196

The following BLAST results are available for this feature:

BLAST of Spo25403.1 vs. NCBI nr
BLAST of Spo25403.1 vs. UniProtKB/TrEMBL
BLAST of Spo25403.1 vs. ExPASy Swiss-Prot
BLAST of Spo25403.1 vs. TAIR (Arabidopsis)

BLAST of Spo25403.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902139713\|gb\|KNA04591.1\|	3.9e-96	100.	hypothetical protein SOVF_1982...	[more]
gi\|731364238\|ref\|XP_010693864.1\|	3.5e-89	92.5	PREDICTED: transmembrane and c...	[more]
gi\|747064450\|ref\|XP_011078807.1\|	2.6e-76	79.0	PREDICTED: transmembrane and c...	[more]
gi\|568815658\|ref\|NP_001275630.1\|	1.1e-74	77.0	uncharacterized protein LOC102...	[more]
gi\|527209540\|gb\|EPS74233.1\|	1.6e-73	77.8	hypothetical protein M569_0052...	[more]

BLAST of Spo25403.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QDH5_SPIOL	2.7e-96	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BFN8_BETVU	2.5e-89	92.5	Uncharacterized protein OS=Bet...	[more]
K7W5R9_SOLTU	7.7e-75	77.0	Transmembrane and coiled-coil ...	[more]
K4D2E1_SOLLC	7.7e-75	77.0	Uncharacterized protein OS=Sol...	[more]
A0A0V0HEI2_SOLCH	7.7e-75	77.0	Putative transmembrane and coi...	[more]

BLAST of Spo25403.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
TMCO1_PONAB	2.2e-38	47.9	Transmembrane and coiled-coil ...	[more]
TMCO1_PIG	2.2e-38	47.9	Transmembrane and coiled-coil ...	[more]
TMCO1_MOUSE	2.2e-38	47.9	Transmembrane and coiled-coil ...	[more]
TMCO1_HUMAN	2.2e-38	47.9	Transmembrane and coiled-coil ...	[more]
TMCO1_BOVIN	2.2e-38	47.9	Transmembrane and coiled-coil ...	[more]

BLAST of Spo25403.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT3G12030.1	1.4e-72	77.0	Protein of unknown function DU...	[more]
AT5G06660.1	7.1e-72	76.4	Protein of unknown function DU...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002809	Protein of unknown function DUF106, transmembrane	PFAM	PF01956	DUF106	coord: 15..169 score: 1.7
IPR002809	Protein of unknown function DUF106, transmembrane	SMART	SM01415	DUF106_2	coord: 13..170 score: 6.4
IPR008559	Uncharacterised conserved protein UCP023322, transmembrane eukaryotic	PIR	PIRSF023322	UCP023322_TM_coiled-coil	coord: 6..188 score: 7.3
IPR008559	Uncharacterised conserved protein UCP023322, transmembrane eukaryotic	PANTHER	PTHR20917	PNAS-RELATED	coord: 5..187 score: 8.8
None	No IPR available	unknown	Coil	Coil	coord: 42..62 score: -coord: 66..86 scor

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0044444	cytoplasmic part
cellular_component	GO:0043229	intracellular organelle
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0030554	adenyl nucleotide binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo16643	0.68	Barchart \| Table
Spo17249	0.67	Barchart \| Table
Spo26697	0.66	Barchart \| Table
Spo22583	0.65	Barchart \| Table
Spo23076	0.65	Barchart \| Table