Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TGAACCATTTTTTTAAAGAAAACAGAAAGCAACCCAAATTGAAAGCCAAAAGGTCAAATTTGGGATCTTTCATCTATTATCAAGTAGTCAAGTTTATTCGAGCTGAAGAGAAGGGAGTCCCGCGGTCCCGCCTGAGACATTCCACCATTAACCGACGGCTGGGAGGTTGTTGATCGACGACTCACATCCAATTCTGCGTTTCATCCCAATTTCTAGGTATTGTTTTTCGCAAATCTTCGTTAATTGCGATTATGATTTTACCAATCCCTACAACTTCATTGCGATGAATTCATAAAAAAACACTCCTAAATTCCACGGCTATGCTTCTTGATCTATTTTTTTTGCTTTCAGTTTTGATTAAATTAACATGTATAGCTTCTATATACCTTATTTTTGCCTTCTAAATTTAGGGATTGCAAGTAAACAATGTCGTTTATTGGGCTCATATCCAATTTTCGAAAGTTTACATTGTTTTTAACCTCAATTCAAGCTGCAAAATTAGATTAGTTGTTCATATTTCTTATTTTAAAGCATTATTTTTTGCAGAGTTTAATCTTGGAATCTGTTGTATGTATCCACGTATTGGATACTTGGTTTATAGTTGAATTTAGTATATTTATGCAAAATGTTGTGTCATTTGAATGGTCTTGTTCTGTCTGATCTCGTTAAATACTTGTTGTTAACCTTATATTCTTACTTTGTCAAAAGTTCATTACCTTTCCTAAAGCTCAAAAGTGAACCAATCAGTACTTCCTTTAAGTCCAACTTCTCTAAGGAAGTGAGCATCAACTAAATGAAACTACTTCTTAGTACGACGCGTTTGGTACGGTGTAGGAATACTTTGAGATATGTGAAGAGTAGTAATCTTCCTAGTGCTATTGGTTTCTTATGTGGATAACGATTATACAAAGACTTGGAATGATTAAAGAGTAGGGGGCGGGGGGAGTGTTGTTGGTTTATTATTCTGAAGTATGAACTAATAGTCTAATAGGAGGTCACGTTTGGATTTTCACTCTAGAGGAGGGACCATTTTTGGGGGAAGATCTTATGGAAGTGGATGGTTTTATACAATTATGAGATAGGATTAACCCTTCTCAATTTACACAACTCTTAGACGCAATGTTGAATGGAAAAAGTATCAACTTGTACGTTTGTATTTTGCATTTCATATGTGTTCTTTACATGTTTCCATGCTGACAATCTTGGTGCTGTTTGAATGTCCCTATGATGAATTGTTTGAGATATTGGAAATGGGTAGATCAATATATAGAAAATATAGGCTATTAATACTTGTGTAGATTCAAGTGAAATTGATAAGATGTGTGCTAGGTTGTTGAAACTAAGATTTTAGTTATGATTAACTTCAAGTCTTAATTGATAAAATTCTATGAATTTCTTTGACTTTTAGTAAAAATGATACTTCTTTTATTTTATAACAAATTATTTCATTGATAGAAAAATATGAAATTTCTAATGATATGTGATTGGGAACTATTTGGTATTAGAAAAATGATTTATTATCTTGAAACATTGTATGTTGGATCGGATCGTTGAATCGGATCGTATTAAGATCCTACCACTCCAACATTTTATCGAAGTAGGATCACCAATATTAAGATCCTACCTAAGATCCGGATCGTTGGCGTGTTTTTCGATCGTAGAGTCATAAGATCCGGATCGAGAGTATAACGATCATGTTCGTTTGTCATCTTCACATTATTTTTCCTGGGAATGTTGTTGGCCTTTCTTTAAGTCACTTCATCAGTTCATTGTGACACCAACTTGGCTTGAGAAGATGACAAGTTGCAAAAACAATGAATATTTGTAATGTAGAAGTTTTGTATTGTAGTTAAGAAGTTCTGCTGAAGGATCAACTTTTTCTTGGCTTGTTCCTTTACTAGGTTGGAAATGTTTTAGTATTATGTGATGTCTAAGCTGTTGGTGTAGGTGTTTATCTGGGAGTTAAGTGCAAAAATGTTTTTGCTACTGAGGATTTGCCAATACTCATAGCTTGCTTACAGAGGAAAGGGAGATAGCTATTTTCCAGTATCTAACTTTTTATTCTTGTTTTTTCTCCTTACAGGCGATATATGGCTTCTACTTTCCGTGCATTTTTGAACAGTCCTGTTGGCCCTAAAACAACTCATTTTTGGGGCCCTGTTGCCAACTGGGGATTCGTTGCTGCTGTATGCTTCTTTACTCTAATTGAAAACATATAAATAACTTTTGTTAATTGAGCTTTGCAACTTATTGTCTGTGTTTTCTATGGAACTGACAGGGGCTTGTGGACATGAATAAACCTCCTGAAAAGATATCTGGCAACATGAGTGCAGGTTTACATTGCTGCTGATTTTACAAAGAAAGTATACTTTCATTATGCATATTGTGATAGTTATCTGATTTTATGCCCTTGTTTTTGGTGTTTCAGCGATGTGTGTTTATTCAGGATTATTCATGAGGTTTGCGTGGATGGTTCAGCCTCGTAATTACTTACTTCTAGCATGCCATGCTTCAAATGAGACTGTTCAACTATACCAACTTTCCCGGTGGGCAAGGGCTAATGGGTAAGGTTTTAGAAGTATTTCCTTGTTCAGACATTCCACGTTTGCTACTTAATTTTGGCTGCATGTTTTCCGTTTGTTGTAATGAATGCAATAAAGATTAACAAAGAACGACAAACAAGAACACCCAGGTTTAACGTGATTTACTAACAATGTGATAACTATGTCTACACGCAGAGGAGAGGAAGTTTTATTGATCTTGAGGAGAATAGATTACAGATTCAGACTTGGTTAATGACCTAGGAAGTTTATTTATTACCTCCAAAATAGCCAATAGGCACCAAATAGACCTAAACAAAAAACTGTAGGCCAACATAAAAAATATTGTGCTGGGTCACTCTAAAAGAGAAACATATCAACTATCAAGGCATATCCCACACTTTTTTGTTCTTCCGTTTTGATGGAATCAAGGACGGGCTTTCCAACTTTCCTTCTCAGTTTCCACTTTGAAACTTTTATGAAGTTGGTGCTTTCTCATGTTAAGAAAAGGTAATAGTTTGTAGGGATAGATTATGATTTAGTTAGTGACTTAGGTATATTGTCTGTGAAACAGGAGTATGCTTGAAACATTTAATTTCCTAGATTTTGGCAGTGGAGCTGAGCTGGTTGGACCTATTTAAGGGATATCAGCTAGCCAAACCCATTATTTCTTTAATAGCTTAGAAGTTGGAAGGCTAGTTGAATACATACGGTCTTGCAGAGTACTCCATAGTATAGTTATTAACAGATTGGATCTCATAGTATTTAGCTCTCAGTCTAGGGAGCCATGGAACATGGAAGTAGCAACATTTCAAAAGCTATTATTTTACACCAAGATATCTAGAATTGAAGGTCCATTTTGACAAGTCAACGGAACTCAGCCCCTTTGTTTTGTAAGTTCTAATCCAAGGTGTGGTGGGATATCATAATTTGCATTAGTTTAATCGTAGAAAAAACAAACTAAACTTGAAACCATATCCAACCCATTCAGATAGACCAAAATTTGTGGTGTATGTCTGTGTCTTGACCAAACTGAACTTTTAAAGTATTGAGTAACCTCAAGAGTCCAGATCAGAAGAAAGGAGAGAATAAATGAGATACAGCCTGAAATTGGTTGATAACTTGTTTCTAAACTGAAAAATATCTCAATCTAAAGATACCCTGACAGGGAAAACTAAAGCACCAACAGTCATGGCTAACGAGTGACTGAGAATACTAGAAAGAATTTGGTCATTATTTTTAGCTTACAAATACAAAACACACAACACTTACCGATCTAGGATAGTTACACTTACATGTTATCTATTGCTCTTTTACAGGTTTATGATTTAGATTTATGTGCCTTAAATTTTTGGTGGATCATTTTATATAGTTAAAGTGCAGATGAATGGATGTTTCATTGTTTCAGTTGGACATTGATGGATTTAAATGTTAATGCAGTTGTGGACTTACTGTTTTGTGTTCACTGCAAGTGCTGTGGCTTCTATAACAAATATTATTGATCTATTATGCAGGTACTTGTCTCAAAAGAAAGACGAAGATACATCATCACAATGA TGAACCATTTTTTTAAAGAAAACAGAAAGCAACCCAAATTGAAAGCCAAAAGGTCAAATTTGGGATCTTTCATCTATTATCAAGTAGTCAAGTTTATTCGAGCTGAAGAGAAGGGAGTCCCGCGGTCCCGCCTGAGACATTCCACCATTAACCGACGGCTGGGAGGTTGTTGATCGACGACTCACATCCAATTCTGCGTTTCATCCCAATTTCTAGGCGATATATGGCTTCTACTTTCCGTGCATTTTTGAACAGTCCTGTTGGCCCTAAAACAACTCATTTTTGGGGCCCTGTTGCCAACTGGGGATTCGTTGCTGCTGGGCTTGTGGACATGAATAAACCTCCTGAAAAGATATCTGGCAACATGAGTGCAGCGATGTGTGTTTATTCAGGATTATTCATGAGGTTTGCGTGGATGGTTCAGCCTCGTAATTACTTACTTCTAGCATGCCATGCTTCAAATGAGACTGTTCAACTATACCAACTTTCCCGGTGGGCAAGGGCTAATGGGTACTTGTCTCAAAAGAAAGACGAAGATACATCATCACAATGA ATGGCTTCTACTTTCCGTGCATTTTTGAACAGTCCTGTTGGCCCTAAAACAACTCATTTTTGGGGCCCTGTTGCCAACTGGGGATTCGTTGCTGCTGGGCTTGTGGACATGAATAAACCTCCTGAAAAGATATCTGGCAACATGAGTGCAGCGATGTGTGTTTATTCAGGATTATTCATGAGGTTTGCGTGGATGGTTCAGCCTCGTAATTACTTACTTCTAGCATGCCATGCTTCAAATGAGACTGTTCAACTATACCAACTTTCCCGGTGGGCAAGGGCTAATGGGTACTTGTCTCAAAAGAAAGACGAAGATACATCATCACAATGA MASTFRAFLNSPVGPKTTHFWGPVANWGFVAAGLVDMNKPPEKISGNMSAAMCVYSGLFMRFAWMVQPRNYLLLACHASNETVQLYQLSRWARANGYLSQKKDEDTSSQ Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo25425.1 vs. NCBI nr
Match: gi|902239928|gb|KNA25800.1| (hypothetical protein SOVF_003510 [Spinacia oleracea]) HSP 1 Score: 231.1 bits (588), Expect = 9.200e-58 Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1
BLAST of Spo25425.1 vs. NCBI nr
Match: gi|731350906|ref|XP_010686753.1| (PREDICTED: mitochondrial pyruvate carrier 1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 214.9 bits (546), Expect = 6.900e-53 Identity = 102/109 (93.58%), Postives = 104/109 (95.41%), Query Frame = 1
BLAST of Spo25425.1 vs. NCBI nr
Match: gi|902198345|gb|KNA13640.1| (hypothetical protein SOVF_114800 [Spinacia oleracea]) HSP 1 Score: 214.2 bits (544), Expect = 1.200e-52 Identity = 99/107 (92.52%), Postives = 102/107 (95.33%), Query Frame = 1
BLAST of Spo25425.1 vs. NCBI nr
Match: gi|823179844|ref|XP_012487626.1| (PREDICTED: mitochondrial pyruvate carrier 1-like [Gossypium raimondii]) HSP 1 Score: 208.4 bits (529), Expect = 6.400e-51 Identity = 96/106 (90.57%), Postives = 101/106 (95.28%), Query Frame = 1
BLAST of Spo25425.1 vs. NCBI nr
Match: gi|823121772|ref|XP_012468335.1| (PREDICTED: mitochondrial pyruvate carrier 1 [Gossypium raimondii]) HSP 1 Score: 208.0 bits (528), Expect = 8.400e-51 Identity = 96/107 (89.72%), Postives = 102/107 (95.33%), Query Frame = 1
BLAST of Spo25425.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S224_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_003510 PE=4 SV=1) HSP 1 Score: 231.1 bits (588), Expect = 6.400e-58 Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1
BLAST of Spo25425.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BVY2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g185220 PE=4 SV=1) HSP 1 Score: 214.9 bits (546), Expect = 4.800e-53 Identity = 102/109 (93.58%), Postives = 104/109 (95.41%), Query Frame = 1
BLAST of Spo25425.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R2C0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_114800 PE=4 SV=1) HSP 1 Score: 214.2 bits (544), Expect = 8.100e-53 Identity = 99/107 (92.52%), Postives = 102/107 (95.33%), Query Frame = 1
BLAST of Spo25425.1 vs. UniProtKB/TrEMBL
Match: A0A0D2QHL7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G271400 PE=4 SV=1) HSP 1 Score: 208.4 bits (529), Expect = 4.500e-51 Identity = 96/106 (90.57%), Postives = 101/106 (95.28%), Query Frame = 1
BLAST of Spo25425.1 vs. UniProtKB/TrEMBL
Match: A0A0D2PMF2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G060500 PE=4 SV=1) HSP 1 Score: 208.0 bits (528), Expect = 5.800e-51 Identity = 96/107 (89.72%), Postives = 102/107 (95.33%), Query Frame = 1
BLAST of Spo25425.1 vs. ExPASy Swiss-Prot
Match: MPC1_ARATH (Mitochondrial pyruvate carrier 1 OS=Arabidopsis thaliana GN=MPC1 PE=3 SV=1) HSP 1 Score: 203.4 bits (516), Expect = 1.300e-51 Identity = 93/107 (86.92%), Postives = 99/107 (92.52%), Query Frame = 1
BLAST of Spo25425.1 vs. ExPASy Swiss-Prot
Match: MPC1_BOVIN (Mitochondrial pyruvate carrier 1 OS=Bos taurus GN=MPC1 PE=1 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 1.800e-21 Identity = 48/77 (62.34%), Postives = 55/77 (71.43%), Query Frame = 1
BLAST of Spo25425.1 vs. ExPASy Swiss-Prot
Match: MPC1_HUMAN (Mitochondrial pyruvate carrier 1 OS=Homo sapiens GN=MPC1 PE=1 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 3.100e-21 Identity = 47/74 (63.51%), Postives = 54/74 (72.97%), Query Frame = 1
BLAST of Spo25425.1 vs. ExPASy Swiss-Prot
Match: MPC1_MOUSE (Mitochondrial pyruvate carrier 1 OS=Mus musculus GN=Mpc1 PE=1 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 9.000e-21 Identity = 46/74 (62.16%), Postives = 53/74 (71.62%), Query Frame = 1
BLAST of Spo25425.1 vs. ExPASy Swiss-Prot
Match: MPC1_RAT (Mitochondrial pyruvate carrier 1 OS=Rattus norvegicus GN=Mpc1 PE=3 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 9.000e-21 Identity = 46/74 (62.16%), Postives = 53/74 (71.62%), Query Frame = 1
BLAST of Spo25425.1 vs. TAIR (Arabidopsis)
Match: AT5G20090.1 (Uncharacterised protein family (UPF0041)) HSP 1 Score: 203.4 bits (516), Expect = 7.300e-53 Identity = 93/107 (86.92%), Postives = 99/107 (92.52%), Query Frame = 1
BLAST of Spo25425.1 vs. TAIR (Arabidopsis)
Match: AT4G14695.1 (Uncharacterised protein family (UPF0041)) HSP 1 Score: 70.1 bits (170), Expect = 9.600e-13 Identity = 31/88 (35.23%), Postives = 46/88 (52.27%), Query Frame = 1
BLAST of Spo25425.1 vs. TAIR (Arabidopsis)
Match: AT4G05590.2 (Uncharacterised protein family UPF0041 (InterPro:IPR005336)) HSP 1 Score: 55.5 bits (132), Expect = 2.500e-8 Identity = 23/56 (41.07%), Postives = 28/56 (50.00%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo25425.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo25425.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo25425.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo25425.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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