Spo25598 (gene)

Overview
NameSpo25598
Typegene
OrganismSpinacia oleracea (Spinach)
Description60S ribosomal protein L44
Locationchr1 : 37412892 .. 37413209 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAACATCCCAAAAACGAAGAAAACCTACTGCAAGAACAAAGAGTGCAAGAAGCACACAACCCACAAAGTGACCCAATACAAGAAGGGCAAAGACAGTTTGGCTGCGCAGGGAAAACGCCGTTACGATCGCAAGCAATCTGGCTATGGCGGTCAGACTAAGCCTGTTTTCCACAAGAAGGCTAAGACTACCAAGAAGATTGTTCTGAGGCTTCAGTGTCAGTCGTGCAAGCATGTGTCGCAGCACCCAATTAAGCGTTGCAAGCACTTTGAGATTGGTGGTGATAAGAAGGGCAAGGGTACTACCTTGTTTTAG

mRNA sequence

ATGGTGAACATCCCAAAAACGAAGAAAACCTACTGCAAGAACAAAGAGTGCAAGAAGCACACAACCCACAAAGTGACCCAATACAAGAAGGGCAAAGACAGTTTGGCTGCGCAGGGAAAACGCCGTTACGATCGCAAGCAATCTGGCTATGGCGGTCAGACTAAGCCTGTTTTCCACAAGAAGGCTAAGACTACCAAGAAGATTGTTCTGAGGCTTCAGTGTCAGTCGTGCAAGCATGTGTCGCAGCACCCAATTAAGCGTTGCAAGCACTTTGAGATTGGTGGTGATAAGAAGGGCAAGGGTACTACCTTGTTTTAG

Coding sequence (CDS)

ATGGTGAACATCCCAAAAACGAAGAAAACCTACTGCAAGAACAAAGAGTGCAAGAAGCACACAACCCACAAAGTGACCCAATACAAGAAGGGCAAAGACAGTTTGGCTGCGCAGGGAAAACGCCGTTACGATCGCAAGCAATCTGGCTATGGCGGTCAGACTAAGCCTGTTTTCCACAAGAAGGCTAAGACTACCAAGAAGATTGTTCTGAGGCTTCAGTGTCAGTCGTGCAAGCATGTGTCGCAGCACCCAATTAAGCGTTGCAAGCACTTTGAGATTGGTGGTGATAAGAAGGGCAAGGGTACTACCTTGTTTTAG

Protein sequence

MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTLF
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo25598.1Spo25598.1mRNA


Homology
[Close]
BLAST of Spo25598.1 vs. NCBI nr
Match: gi|224094107|ref|XP_002310076.1| (hypothetical protein POPTR_0007s07730g [Populus trichocarpa])

HSP 1 Score: 213.4 bits (542), Expect = 1.900e-52
Identity = 102/105 (97.14%), Postives = 104/105 (99.05%), Query Frame = 1 

		  

Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTKKTYCKNKECKKHT HKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTLF 106
           KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGT+LF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105
[Close]
BLAST of Spo25598.1 vs. NCBI nr
Match: gi|590621608|ref|XP_007024824.1| (Zinc-binding ribosomal protein family protein [Theobroma cacao])

HSP 1 Score: 212.2 bits (539), Expect = 4.300e-52
Identity = 101/105 (96.19%), Postives = 104/105 (99.05%), Query Frame = 1 

		  

Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTKKTYCKNKECKKHT HKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTLF 106
           KAKTTKKIVLRLQCQ+CKHVSQHPIKRCKHFEIGGDKKGKGT+LF
Sbjct: 61  KAKTTKKIVLRLQCQACKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105
[Close]
BLAST of Spo25598.1 vs. NCBI nr
Match: gi|769803427|ref|XP_011625945.1| (PREDICTED: 60S ribosomal protein L44 isoform X2 [Amborella trichopoda])

HSP 1 Score: 211.8 bits (538), Expect = 5.600e-52
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 1 

		  

Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTKKTYCKNKECKKHT HKVTQYKKGKDSLA QGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKNKECKKHTLHKVTQYKKGKDSLAVQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTLF 106
           KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGT+LF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105
[Close]
BLAST of Spo25598.1 vs. NCBI nr
Match: gi|901795705|gb|KMZ58640.1| (60S ribosomal protein L44 [Zostera marina])

HSP 1 Score: 211.1 bits (536), Expect = 9.500e-52
Identity = 100/105 (95.24%), Postives = 104/105 (99.05%), Query Frame = 1 

		  

Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTKKTYCKNK+CKKHT HKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKNKQCKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTLF 106
           KAKTTKKIVLRLQCQSCKH+SQHPIKRCKHFEIGGDKKGKGT+LF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHMSQHPIKRCKHFEIGGDKKGKGTSLF 105
[Close]
BLAST of Spo25598.1 vs. NCBI nr
Match: gi|460391881|ref|XP_004241547.1| (PREDICTED: 60S ribosomal protein L44 [Solanum lycopersicum])

HSP 1 Score: 210.3 bits (534), Expect = 1.600e-51
Identity = 100/105 (95.24%), Postives = 104/105 (99.05%), Query Frame = 1 

		  

Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTKKTYCK+KECKKHT HKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTLF 106
           KAKTTKKIVLRLQCQSCKH+SQHPIKRCKHFEIGGDKKGKGT+LF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHMSQHPIKRCKHFEIGGDKKGKGTSLF 105
[Close]
BLAST of Spo25598.1 vs. UniProtKB/TrEMBL
Match: A9PD13_POPTR (60S ribosomal protein L36a/L44 OS=Populus trichocarpa GN=POPTR_0007s07730g PE=2 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.300e-52
Identity = 102/105 (97.14%), Postives = 104/105 (99.05%), Query Frame = 1 

		  

Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTKKTYCKNKECKKHT HKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTLF 106
           KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGT+LF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105
[Close]
BLAST of Spo25598.1 vs. UniProtKB/TrEMBL
Match: A0A061GCY8_THECC (Zinc-binding ribosomal protein family protein OS=Theobroma cacao GN=TCM_029290 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 3.000e-52
Identity = 101/105 (96.19%), Postives = 104/105 (99.05%), Query Frame = 1 

		  

Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTKKTYCKNKECKKHT HKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTLF 106
           KAKTTKKIVLRLQCQ+CKHVSQHPIKRCKHFEIGGDKKGKGT+LF
Sbjct: 61  KAKTTKKIVLRLQCQACKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105
[Close]
BLAST of Spo25598.1 vs. UniProtKB/TrEMBL
Match: A0A0K9NRP7_ZOSMR (60S ribosomal protein L44 OS=Zostera marina GN=ZOSMA_22G01510 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 6.600e-52
Identity = 100/105 (95.24%), Postives = 104/105 (99.05%), Query Frame = 1 

		  

Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTKKTYCKNK+CKKHT HKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKNKQCKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTLF 106
           KAKTTKKIVLRLQCQSCKH+SQHPIKRCKHFEIGGDKKGKGT+LF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHMSQHPIKRCKHFEIGGDKKGKGTSLF 105
[Close]
BLAST of Spo25598.1 vs. UniProtKB/TrEMBL
Match: K4C8M5_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.100e-51
Identity = 100/105 (95.24%), Postives = 104/105 (99.05%), Query Frame = 1 

		  

Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTKKTYCK+KECKKHT HKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTLF 106
           KAKTTKKIVLRLQCQSCKH+SQHPIKRCKHFEIGGDKKGKGT+LF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHMSQHPIKRCKHFEIGGDKKGKGTSLF 105
[Close]
BLAST of Spo25598.1 vs. UniProtKB/TrEMBL
Match: Q00508_CANMA (Ribosomal protein L41 OS=Candida maltosa PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.500e-51
Identity = 100/105 (95.24%), Postives = 103/105 (98.10%), Query Frame = 1 

		  

Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTKKTYCK+KECKKHT HKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTLF 106
           KAKTTKKIVLRLQCQ CKHVSQHPIKRCKHFEIGGDKKGKGT+LF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105
[Close]
BLAST of Spo25598.1 vs. ExPASy Swiss-Prot
Match: RL44_GOSHI (60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3)

HSP 1 Score: 208.8 bits (530), Expect = 3.000e-53
Identity = 99/105 (94.29%), Postives = 103/105 (98.10%), Query Frame = 1 

		  

Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTKKTYCK+KEC+KHT HKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTLF 106
           KAKTTKKIVLRLQCQ CKHVSQHPIKRCKHFEIGGDKKGKGT+LF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105
[Close]
BLAST of Spo25598.1 vs. ExPASy Swiss-Prot
Match: RL36A_ARATH (60S ribosomal protein L36a OS=Arabidopsis thaliana GN=RPL36AA PE=2 SV=3)

HSP 1 Score: 206.8 bits (525), Expect = 1.100e-52
Identity = 100/105 (95.24%), Postives = 101/105 (96.19%), Query Frame = 1 

		  

Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNIPKTK TYCKNKECKKHT HKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTLF 106
           KAKTTKKIVLRLQCQSCKH SQ PIKRCKHFEIGGDKKGKGT+LF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105
[Close]
BLAST of Spo25598.1 vs. ExPASy Swiss-Prot
Match: RL44_PHARH (60S ribosomal protein L44 OS=Phaffia rhodozyma GN=RPL44 PE=3 SV=3)

HSP 1 Score: 174.1 bits (440), Expect = 8.100e-43
Identity = 81/104 (77.88%), Postives = 91/104 (87.50%), Query Frame = 1 

		  

Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTL 105
           KAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK KG  +
Sbjct: 61  KAKTTKKVVLRLECSVCKYKMQMTLKRCKHFELGGDKKTKGAAI 104
[Close]
BLAST of Spo25598.1 vs. ExPASy Swiss-Prot
Match: RL44_COPC7 (60S ribosomal protein L44 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=RPL44 PE=3 SV=2)

HSP 1 Score: 172.9 bits (437), Expect = 1.800e-42
Identity = 82/104 (78.85%), Postives = 91/104 (87.50%), Query Frame = 1 

		  

Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNIPKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTL 105
           KAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GG+KK KG  L
Sbjct: 61  KAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKGAAL 104
[Close]
BLAST of Spo25598.1 vs. ExPASy Swiss-Prot
Match: RL44_COPCI (60S ribosomal protein L44 OS=Coprinopsis cinerea GN=RPL44 PE=3 SV=3)

HSP 1 Score: 172.9 bits (437), Expect = 1.800e-42
Identity = 82/104 (78.85%), Postives = 91/104 (87.50%), Query Frame = 1 

		  

Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNIPKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTL 105
           KAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GG+KK KG  L
Sbjct: 61  KAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKGAAL 104
[Close]
BLAST of Spo25598.1 vs. TAIR (Arabidopsis)
Match: AT3G23390.1 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 206.8 bits (525), Expect = 6.300e-54
Identity = 100/105 (95.24%), Postives = 101/105 (96.19%), Query Frame = 1 

		  

Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNIPKTK TYCKNKECKKHT HKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTLF 106
           KAKTTKKIVLRLQCQSCKH SQ PIKRCKHFEIGGDKKGKGT+LF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105
[Close]
BLAST of Spo25598.1 vs. TAIR (Arabidopsis)
Match: AT4G14320.2 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 183.0 bits (463), Expect = 9.800e-47
Identity = 89/93 (95.70%), Postives = 89/93 (95.70%), Query Frame = 1 

		  

Query: 1  MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
          MVNIPKTK TYCKNKECKKHT HKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1  MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61 KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEI 94
          KAKTTKKIVLRLQCQSCKH SQ PIKRCKHFEI
Sbjct: 61 KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEI 93
The following BLAST results are available for this feature:
BLAST of Spo25598.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|224094107|ref|XP_002310076.1|1.9e-5297.1hypothetical protein POPTR_000... [more]
gi|590621608|ref|XP_007024824.1|4.3e-5296.1Zinc-binding ribosomal protein... [more]
gi|769803427|ref|XP_011625945.1|5.6e-5296.1PREDICTED: 60S ribosomal prote... [more]
gi|901795705|gb|KMZ58640.1|9.5e-5295.260S ribosomal protein L44 [Zos... [more]
gi|460391881|ref|XP_004241547.1|1.6e-5195.2PREDICTED: 60S ribosomal prote... [more]
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BLAST of Spo25598.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A9PD13_POPTR1.3e-5297.160S ribosomal protein L36a/L44... [more]
A0A061GCY8_THECC3.0e-5296.1Zinc-binding ribosomal protein... [more]
A0A0K9NRP7_ZOSMR6.6e-5295.260S ribosomal protein L44 OS=Z... [more]
K4C8M5_SOLLC1.1e-5195.2Uncharacterized protein OS=Sol... [more]
Q00508_CANMA1.5e-5195.2Ribosomal protein L41 OS=Candi... [more]
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BLAST of Spo25598.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RL44_GOSHI3.0e-5394.260S ribosomal protein L44 OS=G... [more]
RL36A_ARATH1.1e-5295.260S ribosomal protein L36a OS=... [more]
RL44_PHARH8.1e-4377.860S ribosomal protein L44 OS=P... [more]
RL44_COPC71.8e-4278.860S ribosomal protein L44 OS=C... [more]
RL44_COPCI1.8e-4278.860S ribosomal protein L44 OS=C... [more]
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BLAST of Spo25598.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT3G23390.16.3e-5495.2Zinc-binding ribosomal protein... [more]
AT4G14320.29.8e-4795.7Zinc-binding ribosomal protein... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000552Ribosomal protein L44ePRODOMPD002841coord: 20..93
score: 3.0
IPR000552Ribosomal protein L44eGENE3D3.10.450.80coord: 2..95
score: 1.5
IPR000552Ribosomal protein L44ePANTHERPTHR1036960S RIBOSOMAL PROTEIN L36A/L44coord: 1..105
score: 2.9E
IPR000552Ribosomal protein L44ePFAMPF00935Ribosomal_L44coord: 19..94
score: 1.3
IPR000552Ribosomal protein L44ePROSITEPS01172RIBOSOMAL_L44Ecoord: 63..74
scor
IPR011332Zinc-binding ribosomal proteinunknownSSF57829Zn-binding ribosomal proteinscoord: 2..94
score: 3.3
NoneNo IPR availablePANTHERPTHR10369:SF3IP17351Pcoord: 1..105
score: 2.9E

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0009627 systemic acquired resistance
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0034976 response to endoplasmic reticulum stress
biological_process GO:0001676 long-chain fatty acid metabolic process
biological_process GO:0010143 cutin biosynthetic process
biological_process GO:0010025 wax biosynthetic process
biological_process GO:0006334 nucleosome assembly
biological_process GO:0008283 cell proliferation
cellular_component GO:0005634 nucleus
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0000786 nucleosome
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
cellular_component GO:0009536 plastid
molecular_function GO:0004467 long-chain fatty acid-CoA ligase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0031957 very long-chain fatty acid-CoA ligase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo175910.73Barchart | Table
Spo100120.68Barchart | Table
Spo143680.67Barchart | Table
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