Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGATGTAGAATGTATAGTGATGCACCCTCTTGCATTATCCTCTACGGCTCTACAAATAATTGGTCATTGCTTCCATGGCTGCTCCTCTCTGCATTCCCCCACAGCACAGCTTACAAAACCAAAATAAATATGCAAAATCCTTTACTAAACATTATAATTTTCAATTTCTTGTTACAAGAAATCCCCCAAGTACTTTATTTGGGCTTCAATCGTCTAATCTTGGGGTTCCTAGACTCTCAAATCAAGCTCAGTCTTTAATTAGTAAATTCCTTCTTTTTTTTTTCTTTAATTTCCTTCCATTATCAGCTTTTAAAATTCTCGATTACTGTATTATAATCTATTTATTCTTGATATTCATTCAGTTTAACACTCATCTCTGATCATAATTTGGCTGTTTGGTTACTTGAAAACTTTAATTTTGACAGATTCAACCCCAATTTCGGAAGTTCCACTCTTTTCACGTGAAGAGGTTTGATACATTTTATCTGAATTGTTGTTTCAATATCATAAATTACGTTATTCATTTTTAGATAGTATCATCTGGTTTAAGTCTGTAATACGGAGATCATGAGGATCTATTTCTTTCGCCAATGTGTTCACATGCTAGGTACAACATGGGCAAAGTAATAGTCTCGTTTCATGTGATGCCAGAAGCAAGCCTAGTTCTTGTCAACAAAATGTATTATACACGTATTATTTAAATGAATGATCACTTTTCCAATGTGTTCAAAAATTGCAGGCAATTGAGAGGTTAAGGTTGAGTAAAGAGAGGCACAAGGGAAAACAACAATTTCTGGCTATGTACTGCAGTATATTTGGTGGGATAACAACAGACCCCGCGGCGATGGTGATCCCCATGGACGATCACATGGTACATAGAGGGCATGGTATATTTGACACCGCTGCTATTGTAGACGGGTATCATTTTGAGATGCTTCATAAAATTGAAATTATAGAAATATTTTTGTATTTTTTACAAATAATGGTGTGGCATAATTTGGACTCAGCCCCGGGTTTTGATTACTTCTTGTATGCAGTCATCTATACGAGTTGGATCAACACCTTGATCGTTGTGTGAGGTCTGCAACTATGGCGAAAATCAGACTACCATTCGATAGCGAAACCATGAGAAACATACTTATACAGACAGTAATTGCTTCCAAGTGTAAAAATGGATCTTTAAGATATTGGCTTTCGGCAGGATACGGCAACTTTCTTCTCTCTCCGTCTGGGTGTGCTGAGCCAACATTTTACGCCATTGTAATTCAAACCTCGGCCTCACAGCCCGATCACAAGGGTGTTAAAGTAATTACTTCTTCCATCCCAATAAAGCCTCCTGTGTTTGCTACAATGAAAAGTGTCAATTACCTTCCAAATGCACTATGCCAAATGGAAGCTGAAGAAAACGGTTGCTTCACATCTGTTTGGTTGGACACTGAAGGATTCGTTGCAGAGGGTCCGAATATGAACGTGGCCTTTGTCACGTATGATAAAGAGCTTTTGATGCCGAGGTTTGATAAAGTTCTTGGTGGATGTACACTCAAGAGAATGCGTACTCTAGCACAGGAACTGGTTAAGAAGGGCGACATTCGCGGAGTAAGCACGAGGGACGTGACCGTGGAAGAAGGGAAAAGGGCTGAGGAGATGATGCTTTTTGGAAGCGGCGTCCTAGTGCGTCCAGTTGTTCAATGGGATGACAAGATCATAGGCAATGGTAATAATTTTGCTTACATTTAAATGCTCTCTTTAGTTTATAGTAAAATGACGGAAGTTGAGATGCTAACAGCTTAAAAACCCAAGCTTTGAACATGTATACAACTCTGCATCTTAGCATTTGCACCTTCTTTACAATTACGACGAGTAGATTGTATTCGTGTCAGTACCTTATAGAGAACATAAGTCTTTTTGATATGGCCCCTCTGTCCCTAGTTAATAGAATTTAAGGAAATAAAGTACAACACATTAATCCATCAAAATTAAAACCAACCAAATGAGATTACAAAGCCTTTTACTAATAAACTAATAAAATTACAACGTTAAAAAGGAAAGAAAAGAAATGGAAAGATCGTTTTCAGACACCTTAAAAGGAAACGGTAAAAACAATTAGGCTCCGTTTGGCAGGGCGTAAAAGGTTTTCATGGAAAACGATTTTCCCCTTTTAAATCATTTCACGTTGTTTGGTTGGGTAAGGGATGGAAAACAATTTTCTATTACTCTCTCAATGATGGAAAACCCTTTTCCATTTGAAAGGGAGGGAAACCACTTTTCCTTCTTTCCTCCTTACCTCCTCTCCTTTCTTCCACTCAATCTTCACCATCTTCTCCCAGTTACCAAACAAATGAAAACTAGTTTGAAATTGTATTTTCCCTTGAAAACTGTTTTACATGAAAAATTGTTTTACAATGAAACGTTTTACGCCTTACCAAACAGAGCCTTAGGGCCGGAGGGAGTATATTTCTAAACATATGATTGTGTCTTCGTGGTGATGGATATTGTGCAGGAAATGAAGGTCCTATTGCTCGAGCACTTCTCGACCTCCTCCTAGAGGACATGATATCAGGCCCATCAACAGTTCGGACAGCCGTTCCTTACTAGGCACAATTCGCAAGAAGAGCATGGTTCTGTTATTTGTACATCAACGTACAGCACTTGGGATTATCAAAAGGCTGGAAAATCTTGTGCTATTTCTCCAGGTCCGATCCCCTAAAGGAAAAAGTAAATAAAAGAGCTCCACTGGTTGAAAATAAAAGGCCAAGGAAATGGATGGTGTACTGGTGGTTAATGCATCCAGTTATTCAGTGGATGAATAGGTCATTACGCCTCATTAGTCACAGGAAAAAAGAATTTCATATCCCCTTTTTTTTTTTCAAGTCCTGTAAAAACTACTTCCTGCTCTGGTTTATAATTTACCACGAGAACATGCAGCTTTGTTATTTTTACCTCCAATAAAAAAGATACGGGAATAATAAGGTTAGACAAATTCAAAGAAGGGCTAGTCATAACAGGTGCAGTAATTATAACTCCAAGCATAGCTGTATAAGTTCGGTTAAAGGTTTACAGTCCAGTACAATTCCCTCC TGATGTAGAATGTATAGTGATGCACCCTCTTGCATTATCCTCTACGGCTCTACAAATAATTGGTCATTGCTTCCATGGCTGCTCCTCTCTGCATTCCCCCACAGCACAGCTTACAAAACCAAAATAAATATGCAAAATCCTTTACTAAACATTATAATTTTCAATTTCTTGTTACAAGAAATCCCCCAAGTACTTTATTTGGGCTTCAATCGTCTAATCTTGGGGTTCCTAGACTCTCAAATCAAGCTCAGTCTTTAATTAATTCAACCCCAATTTCGGAAGTTCCACTCTTTTCACGTGAAGAGGCAATTGAGAGGTTAAGGTTGAGTAAAGAGAGGCACAAGGGAAAACAACAATTTCTGGCTATGTACTGCAGTATATTTGGTGGGATAACAACAGACCCCGCGGCGATGGTGATCCCCATGGACGATCACATGGTACATAGAGGGCATGGTATATTTGACACCGCTGCTATTGTAGACGGTCATCTATACGAGTTGGATCAACACCTTGATCGTTGTGTGAGGTCTGCAACTATGGCGAAAATCAGACTACCATTCGATAGCGAAACCATGAGAAACATACTTATACAGACAGTAATTGCTTCCAAGTGTAAAAATGGATCTTTAAGATATTGGCTTTCGGCAGGATACGGCAACTTTCTTCTCTCTCCGTCTGGGTGTGCTGAGCCAACATTTTACGCCATTGTAATTCAAACCTCGGCCTCACAGCCCGATCACAAGGGTGTTAAAGTAATTACTTCTTCCATCCCAATAAAGCCTCCTGTGTTTGCTACAATGAAAAGTGTCAATTACCTTCCAAATGCACTATGCCAAATGGAAGCTGAAGAAAACGGTTGCTTCACATCTGTTTGGTTGGACACTGAAGGATTCGTTGCAGAGGGTCCGAATATGAACGTGGCCTTTGTCACGTATGATAAAGAGCTTTTGATGCCGAGGTTTGATAAAGTTCTTGGTGGATGTACACTCAAGAGAATGCGTACTCTAGCACAGGAACTGGTTAAGAAGGGCGACATTCGCGGAGTAAGCACGAGGGACGTGACCGTGGAAGAAGGGAAAAGGGCTGAGGAGATGATGCTTTTTGGAAGCGGCGTCCTAGTGCGTCCAGTTGTTCAATGGGATGACAAGATCATAGGCAATGGAAATGAAGGTCCTATTGCTCGAGCACTTCTCGACCTCCTCCTAGAGGACATGATATCAGGCCCATCAACAGTTCGGACAGCCGTTCCTTACTAGGCACAATTCGCAAGAAGAGCATGGTTCTGTTATTTGTACATCAACGTACAGCACTTGGGATTATCAAAAGGCTGGAAAATCTTGTGCTATTTCTCCAGGTCCGATCCCCTAAAGGAAAAAGTAAATAAAAGAGCTCCACTGGTTGAAAATAAAAGGCCAAGGAAATGGATGGTGTACTGGTGGTTAATGCATCCAGTTATTCAGTGGATGAATAGGTCATTACGCCTCATTAGTCACAGGAAAAAAGAATTTCATATCCCCTTTTTTTTTTTCAAGTCCTGTAAAAACTACTTCCTGCTCTGGTTTATAATTTACCACGAGAACATGCAGCTTTGTTATTTTTACCTCCAATAAAAAAGATACGGGAATAATAAGGTTAGACAAATTCAAAGAAGGGCTAGTCATAACAGGTGCAGTAATTATAACTCCAAGCATAGCTGTATAAGTTCGGTTAAAGGTTTACAGTCCAGTACAATTCCCTCC ATGGCTGCTCCTCTCTGCATTCCCCCACAGCACAGCTTACAAAACCAAAATAAATATGCAAAATCCTTTACTAAACATTATAATTTTCAATTTCTTGTTACAAGAAATCCCCCAAGTACTTTATTTGGGCTTCAATCGTCTAATCTTGGGGTTCCTAGACTCTCAAATCAAGCTCAGTCTTTAATTAATTCAACCCCAATTTCGGAAGTTCCACTCTTTTCACGTGAAGAGGCAATTGAGAGGTTAAGGTTGAGTAAAGAGAGGCACAAGGGAAAACAACAATTTCTGGCTATGTACTGCAGTATATTTGGTGGGATAACAACAGACCCCGCGGCGATGGTGATCCCCATGGACGATCACATGGTACATAGAGGGCATGGTATATTTGACACCGCTGCTATTGTAGACGGTCATCTATACGAGTTGGATCAACACCTTGATCGTTGTGTGAGGTCTGCAACTATGGCGAAAATCAGACTACCATTCGATAGCGAAACCATGAGAAACATACTTATACAGACAGTAATTGCTTCCAAGTGTAAAAATGGATCTTTAAGATATTGGCTTTCGGCAGGATACGGCAACTTTCTTCTCTCTCCGTCTGGGTGTGCTGAGCCAACATTTTACGCCATTGTAATTCAAACCTCGGCCTCACAGCCCGATCACAAGGGTGTTAAAGTAATTACTTCTTCCATCCCAATAAAGCCTCCTGTGTTTGCTACAATGAAAAGTGTCAATTACCTTCCAAATGCACTATGCCAAATGGAAGCTGAAGAAAACGGTTGCTTCACATCTGTTTGGTTGGACACTGAAGGATTCGTTGCAGAGGGTCCGAATATGAACGTGGCCTTTGTCACGTATGATAAAGAGCTTTTGATGCCGAGGTTTGATAAAGTTCTTGGTGGATGTACACTCAAGAGAATGCGTACTCTAGCACAGGAACTGGTTAAGAAGGGCGACATTCGCGGAGTAAGCACGAGGGACGTGACCGTGGAAGAAGGGAAAAGGGCTGAGGAGATGATGCTTTTTGGAAGCGGCGTCCTAGTGCGTCCAGTTGTTCAATGGGATGACAAGATCATAGGCAATGGAAATGAAGGTCCTATTGCTCGAGCACTTCTCGACCTCCTCCTAGAGGACATGATATCAGGCCCATCAACAGTTCGGACAGCCGTTCCTTACTAG MAAPLCIPPQHSLQNQNKYAKSFTKHYNFQFLVTRNPPSTLFGLQSSNLGVPRLSNQAQSLINSTPISEVPLFSREEAIERLRLSKERHKGKQQFLAMYCSIFGGITTDPAAMVIPMDDHMVHRGHGIFDTAAIVDGHLYELDQHLDRCVRSATMAKIRLPFDSETMRNILIQTVIASKCKNGSLRYWLSAGYGNFLLSPSGCAEPTFYAIVIQTSASQPDHKGVKVITSSIPIKPPVFATMKSVNYLPNALCQMEAEENGCFTSVWLDTEGFVAEGPNMNVAFVTYDKELLMPRFDKVLGGCTLKRMRTLAQELVKKGDIRGVSTRDVTVEEGKRAEEMMLFGSGVLVRPVVQWDDKIIGNGNEGPIARALLDLLLEDMISGPSTVRTAVPY Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo25621.1 vs. NCBI nr
Match: gi|870867103|gb|KMT18002.1| (hypothetical protein BVRB_2g031960 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 581.6 bits (1498), Expect = 1.000e-162 Identity = 294/393 (74.81%), Postives = 327/393 (83.21%), Query Frame = 1
BLAST of Spo25621.1 vs. NCBI nr
Match: gi|731317190|ref|XP_010668094.1| (PREDICTED: D-amino-acid transaminase, chloroplastic [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 575.5 bits (1482), Expect = 7.200e-161 Identity = 294/398 (73.87%), Postives = 327/398 (82.16%), Query Frame = 1
BLAST of Spo25621.1 vs. NCBI nr
Match: gi|902140766|gb|KNA04650.1| (hypothetical protein SOVF_197660 [Spinacia oleracea]) HSP 1 Score: 512.3 bits (1318), Expect = 7.500e-142 Identity = 260/296 (87.84%), Postives = 262/296 (88.51%), Query Frame = 1
BLAST of Spo25621.1 vs. NCBI nr
Match: gi|743842006|ref|XP_011026599.1| (PREDICTED: D-amino-acid transaminase, chloroplastic-like isoform X1 [Populus euphratica]) HSP 1 Score: 494.2 bits (1271), Expect = 2.100e-136 Identity = 250/390 (64.10%), Postives = 305/390 (78.21%), Query Frame = 1
BLAST of Spo25621.1 vs. NCBI nr
Match: gi|566213507|ref|XP_002324812.2| (hypothetical protein POPTR_0018s00630g [Populus trichocarpa]) HSP 1 Score: 489.2 bits (1258), Expect = 6.800e-135 Identity = 249/390 (63.85%), Postives = 301/390 (77.18%), Query Frame = 1
BLAST of Spo25621.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CWP4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g031960 PE=3 SV=1) HSP 1 Score: 581.6 bits (1498), Expect = 7.000e-163 Identity = 294/393 (74.81%), Postives = 327/393 (83.21%), Query Frame = 1
BLAST of Spo25621.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QBM5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_197660 PE=3 SV=1) HSP 1 Score: 512.3 bits (1318), Expect = 5.200e-142 Identity = 260/296 (87.84%), Postives = 262/296 (88.51%), Query Frame = 1
BLAST of Spo25621.1 vs. UniProtKB/TrEMBL
Match: B9IKL7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s00630g PE=3 SV=2) HSP 1 Score: 489.2 bits (1258), Expect = 4.700e-135 Identity = 249/390 (63.85%), Postives = 301/390 (77.18%), Query Frame = 1
BLAST of Spo25621.1 vs. UniProtKB/TrEMBL
Match: V4WBW3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008593mg PE=3 SV=1) HSP 1 Score: 484.2 bits (1245), Expect = 1.500e-133 Identity = 239/342 (69.88%), Postives = 283/342 (82.75%), Query Frame = 1
BLAST of Spo25621.1 vs. UniProtKB/TrEMBL
Match: A0A0D2SQS1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G108900 PE=3 SV=1) HSP 1 Score: 483.8 bits (1244), Expect = 2.000e-133 Identity = 241/381 (63.25%), Postives = 300/381 (78.74%), Query Frame = 1
BLAST of Spo25621.1 vs. ExPASy Swiss-Prot
Match: DAAA_ARATH (D-amino-acid transaminase, chloroplastic OS=Arabidopsis thaliana GN=DAAT PE=1 SV=1) HSP 1 Score: 436.0 bits (1120), Expect = 4.300e-121 Identity = 223/346 (64.45%), Postives = 270/346 (78.03%), Query Frame = 1
BLAST of Spo25621.1 vs. ExPASy Swiss-Prot
Match: ILVE_METJA (Putative branched-chain-amino-acid aminotransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=ilvE PE=3 SV=1) HSP 1 Score: 107.8 bits (268), Expect = 2.700e-22 Identity = 71/256 (27.73%), Postives = 125/256 (48.83%), Query Frame = 1
BLAST of Spo25621.1 vs. ExPASy Swiss-Prot
Match: ILVE_ARCFU (Putative branched-chain-amino-acid aminotransferase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=ilvE PE=3 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 1.100e-20 Identity = 72/263 (27.38%), Postives = 124/263 (47.15%), Query Frame = 1
BLAST of Spo25621.1 vs. ExPASy Swiss-Prot
Match: DAAA_BACLI (D-alanine aminotransferase OS=Bacillus licheniformis GN=dat PE=3 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 7.000e-15 Identity = 70/288 (24.31%), Postives = 127/288 (44.10%), Query Frame = 1
BLAST of Spo25621.1 vs. ExPASy Swiss-Prot
Match: DAAA_BACSU (D-alanine aminotransferase OS=Bacillus subtilis (strain 168) GN=dat PE=3 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 7.000e-15 Identity = 75/260 (28.85%), Postives = 115/260 (44.23%), Query Frame = 1
BLAST of Spo25621.1 vs. TAIR (Arabidopsis)
Match: AT5G57850.1 (D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein) HSP 1 Score: 436.0 bits (1120), Expect = 2.400e-122 Identity = 223/346 (64.45%), Postives = 270/346 (78.03%), Query Frame = 1
BLAST of Spo25621.1 vs. TAIR (Arabidopsis)
Match: AT3G05190.1 (D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein) HSP 1 Score: 76.3 bits (186), Expect = 4.800e-14 Identity = 67/263 (25.48%), Postives = 120/263 (45.63%), Query Frame = 1
BLAST of Spo25621.1 vs. TAIR (Arabidopsis)
Match: AT5G27410.1 (D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein) HSP 1 Score: 76.3 bits (186), Expect = 4.800e-14 Identity = 68/261 (26.05%), Postives = 121/261 (46.36%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo25621.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo25621.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo25621.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo25621.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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