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Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTCATTGCCTCATACTTATGGTGTTGTGGTGGTTATATCTTTAAAGTTACAATTAGAAAGGTGGAAGCTTAGGCTAAAAAGTAGGATGAAAAGTTTCAACAGCACAGGATATACATGACCTCTCAGATCCTTATACTTTACGTTCTCCTCACATGCTGGCAATATTTTTGTGACAAATCAAGAAACGCAAAACTGACCTTTCTAATTAATGATCATCACCAAAAAACAAAACTCTTGTTTACACCAACATGAATATACCCACAAAGTAACTTACATACCTAACAGAAATGTGAAAGAGAGTGGTCTGACTTTCCGGATGCTTTTTCGACGAAACCCCTACGGCACAACCTACTATGATAATAGTGGATTAGTGGCTATAAATAGCAGACAGATACGAGTAAGAAACAGAGAAGCAAAACAGATTACCTCTAACTCCAACAACTTTCCTAAATACCAAAACTCGACCATGGGAAAGACTGTCAAATCAGCACTGTTGGTGTTCCTCTTTGTTATCGCAATTGGTAAACAAAAAACATCTGTTAATTTTTCTATTTTTCTATTTAAATTATTTAATCATTTATAGTCTCACAAATGAAGTGCTTTCTTTAATTTTTTTTGAGCAGGTTTACCAATCGCCTACTCAGCAATGGACATACAGTGTTCCAGTCAATACGACTGCAGATTAACAGGCTGCCCCTGCTCAAACGGAAGGTGTACATGCTCAGAAATAAATTCAAAGGCACCACCAAAGCCACCATCATATGAAATAAATTCAAATTATCCACCAAAGCCACCATCAAAAATAAATTCAAAGGCACCACCAAAGGCACCATCAGCTGAGCAAGAGCCACAGAGTCCCCGTCTTCCATGATGGAATACACATAGACAACAAGACAATCCCTAAGTTGACCCTAAGAATAACTGTTATTACAATAAAACACGACCAGCATTATGGCAGGTCATAGAAATGATTACTGTCTGTATATTCAGGAATAATGTAACATAAAAAAGGAACAGCTTTTCAGTCAAATAAACTGTCTTCACTATTTGTTACTTTAACCTTCAAACAGAAATTTTTTGAGGACAAAGCTAATGGTGATCTATGCCCAGCTATGCAAATTTTCAGTAACACTAATTTACATAATTATGGAGCTAAATATTACACTATGGAAAGTGGAAACTATAATTGGTGCTAGTGTAAATCCGCTCATTGCCTCATACTTATGGTGTTGTGGTGGTTATATCTTTAAAGTTACAATTAGAAAGGTGGAAGCTTAGGCTAAAAAGTAGGATGAAAAGTTTCAACAGCACAGGATATACATGACCTCTCAGATCCTTATACTTTACGTTCTCCTCACATGCTGGCAATATTTTTGTGACAAATCAAGAAACGCAAAACTGACCTTTCTAATTAATGATCATCACCAAAAAACAAAACTCTTGTTTACACCAACATGAATATACCCACAAAGTAACTTACATACCTAACAGAAATGTGAAAGAGAGTGGTCTGACTTTCCGGATGCTTTTTCGACGAAACCCCTACGGCACAACCTACTATGATAATAGTGGATTAGTGGCTATAAATAGCAGACAGATACGAGTAAGAAACAGAGAAGCAAAACAGATTACCTCTAACTCCAACAACTTTCCTAAATACCAAAACTCGACCATGGGAAAGACTGTCAAATCAGCACTGTTGGTGTTCCTCTTTGTTATCGCAATTGGTTTACCAATCGCCTACTCAGCAATGGACATACAGTGTTCCAGTCAATACGACTGCAGATTAACAGGCTGCCCCTGCTCAAACGGAAGGTGTACATGCTCAGAAATAAATTCAAAGGCACCACCAAAGCCACCATCATATGAAATAAATTCAAATTATCCACCAAAGCCACCATCAAAAATAAATTCAAAGGCACCACCAAAGGCACCATCAGCTGAGCAAGAGCCACAGAGTCCCCGTCTTCCATGATGGAATACACATAGACAACAAGACAATCCCTAAGTTGACCCTAAGAATAACTGTTATTACAATAAAACACGACCAGCATTATGGCAGGTCATAGAAATGATTACTGTCTGTATATTCAGGAATAATGTAACATAAAAAAGGAACAGCTTTTCAGTCAAATAAACTGTCTTCACTATTTGTTACTTTAACCTTCAAACAGAAATTTTTTGAGGACAAAGCTAATGGTGATCTATGCCCAGCTATGCAAATTTTCAGTAACACTAATTTACATAATTATGGAGCTAAATATTACACTATGGAAAGTGGAAACTATAATTGGTGCTAGTGTAAATCCG ATGATCATCACCAAAAAACAAAACTCTTGTTTACACCAACATGAATATACCCACAAAGTAACTTACATACCTAACAGAAATGTGAAAGAGAGTGGTCTGACTTTCCGGATGCTTTTTCGACGAAACCCCTACGGCACAACCTACTATGATAATAGTGGATTAGTGGCTATAAATAGCAGACAGATACGAGTAAGAAACAGAGAAGCAAAACAGATTACCTCTAACTCCAACAACTTTCCTAAATACCAAAACTCGACCATGGGAAAGACTGTCAAATCAGCACTGTTGGTGTTCCTCTTTGTTATCGCAATTGGTTTACCAATCGCCTACTCAGCAATGGACATACAGTGTTCCAGTCAATACGACTGCAGATTAACAGGCTGCCCCTGCTCAAACGGAAGGTGTACATGCTCAGAAATAAATTCAAAGGCACCACCAAAGCCACCATCATATGAAATAAATTCAAATTATCCACCAAAGCCACCATCAAAAATAAATTCAAAGGCACCACCAAAGGCACCATCAGCTGAGCAAGAGCCACAGAGTCCCCGTCTTCCATGA MIITKKQNSCLHQHEYTHKVTYIPNRNVKESGLTFRMLFRRNPYGTTYYDNSGLVAINSRQIRVRNREAKQITSNSNNFPKYQNSTMGKTVKSALLVFLFVIAIGLPIAYSAMDIQCSSQYDCRLTGCPCSNGRCTCSEINSKAPPKPPSYEINSNYPPKPPSKINSKAPPKAPSAEQEPQSPRLP Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo25727.1 vs. NCBI nr
Match: gi|902233207|gb|KNA22952.1| (hypothetical protein SOVF_029170 [Spinacia oleracea]) HSP 1 Score: 198.0 bits (502), Expect = 1.500e-47 Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1
BLAST of Spo25727.1 vs. NCBI nr
Match: gi|870855384|gb|KMT07117.1| (hypothetical protein BVRB_6g154450 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 76.6 bits (187), Expect = 5.000e-11 Identity = 43/66 (65.15%), Postives = 49/66 (74.24%), Query Frame = 1
BLAST of Spo25727.1 vs. NCBI nr
Match: gi|870855383|gb|KMT07116.1| (hypothetical protein BVRB_6g154440 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 67.0 bits (162), Expect = 3.900e-8 Identity = 48/102 (47.06%), Postives = 54/102 (52.94%), Query Frame = 1
BLAST of Spo25727.1 vs. NCBI nr
Match: gi|870855385|gb|KMT07118.1| (hypothetical protein BVRB_6g154460 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 60.8 bits (146), Expect = 2.800e-6 Identity = 31/63 (49.21%), Postives = 37/63 (58.73%), Query Frame = 1
BLAST of Spo25727.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RVS2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_029170 PE=4 SV=1) HSP 1 Score: 198.0 bits (502), Expect = 1.000e-47 Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1
BLAST of Spo25727.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C0Y1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g154450 PE=4 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 3.500e-11 Identity = 43/66 (65.15%), Postives = 49/66 (74.24%), Query Frame = 1
BLAST of Spo25727.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EVB8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g154440 PE=4 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 2.700e-8 Identity = 48/102 (47.06%), Postives = 54/102 (52.94%), Query Frame = 1
BLAST of Spo25727.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C508_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g154460 PE=4 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 2.000e-6 Identity = 31/63 (49.21%), Postives = 37/63 (58.73%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo25727.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 4
BLAST of Spo25727.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 4
BLAST of Spo25727.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo25727.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 0
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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