Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCGCATGCTCGTCTATAAAGAGCCCGCGCGGCCCCTATTCATTGTAACTCTAACACAGTAACACTATTCTATAACCTTCTTTTATCTTAAGGGAAAAAAACATGGCTCAATTGCAGAAGTTGGAGGTGCAAGTGGAGCTCAATTGTTGTGCAGACAAGCTCTTTGGAATGCTAATGGCAAAACAGCCAGACATCCACAACCTCTCCAGCCAGGTTCACACTTGTAAGGTCCTACAGGATAATTGCATCACTGTTGGTAGCTCAAGGAAATGGGACTTCGTCATGGGTACGTAATTAATATTCATTGTTTTTATTATGTAATACTACCTCATTTTCATTAAGTTCTTTACACTTACTATTTGCACGGATTTCAATGCAATATTTAACCGTTAATATATCCAATTCCGCATGACTAAAAAGATATTAAAAAATCGATAATTAGAAAATACATTTTGAGACGAATCTAACAATTTCTCACATAATAATATTTTGATACACATATATAATAGTGAGATTTTATTTTCAAAGTTTTTGACTTTTTGACCCATTTTTCCAAAGCGTAAAAAACTTAATGATAATGAAGGCAGTACGTGATTAATAATTTAAGAATGTCATTATTTTCGATTTAATCTATCGATCTTCACTTTCGTATATACATGTCAGTAATTTTCTATGTACAACCGGTTAATTAAATTAACCTTGATTGGCGACCTAATATGCGTGCAGATGGGAAGTCACAATTCTTGATAGAGAGAATTGAGGAAATTGATGAGAAGAACAGGAAGGTGAATCGCAAAGTGATTGAAGGGGAGTTAATGAAGCATTACAAAACTCTGTACAACACAATTGAGATCATTGAAACGGGGGATGCAACTTGTAAGGTTGTATTTTCTCTTGAATATGAAAAGATCAATGAAGATGCACCTGAACCTCACAACGTTCTTCAATTTTCAGCTGGTTTCTTCAAGGAAATTGCGTGTCACTTCACCAACTAATGTGCGTTCTAAGTATGAATTAACCACTAAAGATGTGTACTACCTTCATCCGGATTTACTCGTCACATTATTAGTTTACTATTTATGTGAGTATTACTACTTACGGATGATATATATATGGTAGTAAATATCACGTAGGGGGTCTAAGCACACTTTGTAAAACCCCATATAAATAAATGGTTTCTTTATGTACTACTGCCACCGTTTTATAATGATATTTACGTTTTCTGTTTTGGTATGTTTCATAATCTTTATCAAATTGTGTTTTATACTATTTTTGTATATGAAAGTTATGTTACTCCGTATTATGCTGTAAGGAGATACGTAGCAATTGTTATCAAGTAACTCTACAAAAAAGGAC TCGCATGCTCGTCTATAAAGAGCCCGCGCGGCCCCTATTCATTGTAACTCTAACACAGTAACACTATTCTATAACCTTCTTTTATCTTAAGGGAAAAAAACATGGCTCAATTGCAGAAGTTGGAGGTGCAAGTGGAGCTCAATTGTTGTGCAGACAAGCTCTTTGGAATGCTAATGGCAAAACAGCCAGACATCCACAACCTCTCCAGCCAGGTTCACACTTGTAAGGTCCTACAGGATAATTGCATCACTGTTGGTAGCTCAAGGAAATGGGACTTCGTCATGGATGGGAAGTCACAATTCTTGATAGAGAGAATTGAGGAAATTGATGAGAAGAACAGGAAGGTGAATCGCAAAGTGATTGAAGGGGAGTTAATGAAGCATTACAAAACTCTGTACAACACAATTGAGATCATTGAAACGGGGGATGCAACTTGTAAGGTTGTATTTTCTCTTGAATATGAAAAGATCAATGAAGATGCACCTGAACCTCACAACGTTCTTCAATTTTCAGCTGGTTTCTTCAAGGAAATTGCGTGTCACTTCACCAACTAATGTGCGTTCTAAGTATGAATTAACCACTAAAGATGTGTACTACCTTCATCCGGATTTACTCGTCACATTATTAGTTTACTATTTATGTGAGTATTACTACTTACGGATGATATATATATGGTAGTAAATATCACGTAGGGGGTCTAAGCACACTTTGTAAAACCCCATATAAATAAATGGTTTCTTTATGTACTACTGCCACCGTTTTATAATGATATTTACGTTTTCTGTTTTGGTATGTTTCATAATCTTTATCAAATTGTGTTTTATACTATTTTTGTATATGAAAGTTATGTTACTCCGTATTATGCTGTAAGGAGATACGTAGCAATTGTTATCAAGTAACTCTACAAAAAAGGAC ATGGCTCAATTGCAGAAGTTGGAGGTGCAAGTGGAGCTCAATTGTTGTGCAGACAAGCTCTTTGGAATGCTAATGGCAAAACAGCCAGACATCCACAACCTCTCCAGCCAGGTTCACACTTGTAAGGTCCTACAGGATAATTGCATCACTGTTGGTAGCTCAAGGAAATGGGACTTCGTCATGGATGGGAAGTCACAATTCTTGATAGAGAGAATTGAGGAAATTGATGAGAAGAACAGGAAGGTGAATCGCAAAGTGATTGAAGGGGAGTTAATGAAGCATTACAAAACTCTGTACAACACAATTGAGATCATTGAAACGGGGGATGCAACTTGTAAGGTTGTATTTTCTCTTGAATATGAAAAGATCAATGAAGATGCACCTGAACCTCACAACGTTCTTCAATTTTCAGCTGGTTTCTTCAAGGAAATTGCGTGTCACTTCACCAACTAA MAQLQKLEVQVELNCCADKLFGMLMAKQPDIHNLSSQVHTCKVLQDNCITVGSSRKWDFVMDGKSQFLIERIEEIDEKNRKVNRKVIEGELMKHYKTLYNTIEIIETGDATCKVVFSLEYEKINEDAPEPHNVLQFSAGFFKEIACHFTN Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo25736.1 vs. NCBI nr
Match: gi|902232446|gb|KNA22636.1| (hypothetical protein SOVF_032640 [Spinacia oleracea]) HSP 1 Score: 308.5 bits (789), Expect = 6.300e-81 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1
BLAST of Spo25736.1 vs. NCBI nr
Match: gi|731344151|ref|XP_010683257.1| (PREDICTED: MLP-like protein 34 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 177.9 bits (450), Expect = 1.300e-41 Identity = 85/148 (57.43%), Postives = 113/148 (76.35%), Query Frame = 1
BLAST of Spo25736.1 vs. NCBI nr
Match: gi|731344153|ref|XP_010683259.1| (PREDICTED: MLP-like protein 34 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 149.1 bits (375), Expect = 6.400e-33 Identity = 72/152 (47.37%), Postives = 104/152 (68.42%), Query Frame = 1
BLAST of Spo25736.1 vs. NCBI nr
Match: gi|731344155|ref|XP_010683260.1| (PREDICTED: MLP-like protein 28 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 144.1 bits (362), Expect = 2.000e-31 Identity = 73/154 (47.40%), Postives = 109/154 (70.78%), Query Frame = 1
BLAST of Spo25736.1 vs. NCBI nr
Match: gi|902232445|gb|KNA22635.1| (hypothetical protein SOVF_032630 [Spinacia oleracea]) HSP 1 Score: 131.7 bits (330), Expect = 1.100e-27 Identity = 65/129 (50.39%), Postives = 93/129 (72.09%), Query Frame = 1
BLAST of Spo25736.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RSY0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_032640 PE=4 SV=1) HSP 1 Score: 308.5 bits (789), Expect = 4.400e-81 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1
BLAST of Spo25736.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C4J1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g154620 PE=4 SV=1) HSP 1 Score: 149.1 bits (375), Expect = 4.400e-33 Identity = 72/152 (47.37%), Postives = 104/152 (68.42%), Query Frame = 1
BLAST of Spo25736.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C044_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g154630 PE=4 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 1.400e-31 Identity = 73/154 (47.40%), Postives = 109/154 (70.78%), Query Frame = 1
BLAST of Spo25736.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RSY5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_032630 PE=4 SV=1) HSP 1 Score: 131.7 bits (330), Expect = 7.300e-28 Identity = 65/129 (50.39%), Postives = 93/129 (72.09%), Query Frame = 1
BLAST of Spo25736.1 vs. UniProtKB/TrEMBL
Match: F6HFH2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05140 PE=4 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 1.900e-20 Identity = 53/151 (35.10%), Postives = 90/151 (59.60%), Query Frame = 1
BLAST of Spo25736.1 vs. ExPASy Swiss-Prot
Match: MLP34_ARATH (MLP-like protein 34 OS=Arabidopsis thaliana GN=MLP34 PE=2 SV=1) HSP 1 Score: 87.4 bits (215), Expect = 1.400e-16 Identity = 50/145 (34.48%), Postives = 80/145 (55.17%), Query Frame = 1
BLAST of Spo25736.1 vs. ExPASy Swiss-Prot
Match: MLP28_ARATH (MLP-like protein 28 OS=Arabidopsis thaliana GN=MLP28 PE=1 SV=1) HSP 1 Score: 85.5 bits (210), Expect = 5.400e-16 Identity = 52/144 (36.11%), Postives = 76/144 (52.78%), Query Frame = 1
BLAST of Spo25736.1 vs. ExPASy Swiss-Prot
Match: MLP43_ARATH (MLP-like protein 43 OS=Arabidopsis thaliana GN=MLP43 PE=1 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 1.100e-13 Identity = 46/144 (31.94%), Postives = 75/144 (52.08%), Query Frame = 1
BLAST of Spo25736.1 vs. ExPASy Swiss-Prot
Match: MLP31_ARATH (MLP-like protein 31 OS=Arabidopsis thaliana GN=MLP31 PE=2 SV=2) HSP 1 Score: 74.7 bits (182), Expect = 9.500e-13 Identity = 44/147 (29.93%), Postives = 75/147 (51.02%), Query Frame = 1
BLAST of Spo25736.1 vs. ExPASy Swiss-Prot
Match: ML165_ARATH (MLP-like protein 165 OS=Arabidopsis thaliana GN=MLP165 PE=2 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 6.200e-12 Identity = 41/142 (28.87%), Postives = 76/142 (53.52%), Query Frame = 1
BLAST of Spo25736.1 vs. TAIR (Arabidopsis)
Match: AT1G70850.1 (MLP-like protein 34) HSP 1 Score: 87.4 bits (215), Expect = 8.000e-18 Identity = 50/145 (34.48%), Postives = 80/145 (55.17%), Query Frame = 1
BLAST of Spo25736.1 vs. TAIR (Arabidopsis)
Match: AT1G70830.1 (MLP-like protein 28) HSP 1 Score: 85.5 bits (210), Expect = 3.000e-17 Identity = 52/144 (36.11%), Postives = 76/144 (52.78%), Query Frame = 1
BLAST of Spo25736.1 vs. TAIR (Arabidopsis)
Match: AT1G23120.1 (Polyketide cyclase/dehydrase and lipid transport superfamily protein) HSP 1 Score: 81.6 bits (200), Expect = 4.400e-16 Identity = 40/144 (27.78%), Postives = 83/144 (57.64%), Query Frame = 1
BLAST of Spo25736.1 vs. TAIR (Arabidopsis)
Match: AT5G28010.1 (Polyketide cyclase/dehydrase and lipid transport superfamily protein) HSP 1 Score: 81.3 bits (199), Expect = 5.700e-16 Identity = 53/149 (35.57%), Postives = 85/149 (57.05%), Query Frame = 1
BLAST of Spo25736.1 vs. TAIR (Arabidopsis)
Match: AT1G70890.1 (MLP-like protein 43) HSP 1 Score: 77.8 bits (190), Expect = 6.300e-15 Identity = 46/144 (31.94%), Postives = 75/144 (52.08%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo25736.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo25736.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo25736.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo25736.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
|