Spo25742 (gene)

Overview
NameSpo25742
Typegene
OrganismSpinacia oleracea (Spinach)
Descriptionhomeobox protein 54
Locationchr1 : 39043062 .. 39044875 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATACAACAGATCAGTCCGCAAAAAGGACAATCCCTTTCAAGTTTCAAGTTTCAAGTTTCTCTATTTGCTACGCAGATACAAACGCTACATTCCCATTTCCCACCAAACAAAGCCACATTAATTAGTAGACTCAACTAGCCATGAGCCGAAAGAGAGATAAACCCTACAATAACTCCCGCCATGTCCCATACTCCTACCCAAAGCGGCGCCGCCCTATGCCGCCACCACCACCTCCTCTGGTAGAAGAACCACCCAAAGAAAAACCAGCCCCACCACCAGCAGTTGTGGTGATTGGGCTCCAAGATGGCTGCTCAGTGTTGGACCTCAAGTCTAGGTTAGAAATATACGGGCCCATATCTCGGATCCGGATAGACCAACAAGGTGTCGGCTTTATCTCTTTCCGGTCTAAATCCGCCGCTGATTCAGCAATCTCCGCCTCCCTTGACCCCTCCTTCGGCATTTCCATCGACTCCCACCGCGTATTTCTCTCTCTTTTAATTATTGTTTTTCAGCTTCCTAATTTGGATTTTTATTTGGGTTTCCGAATTTGGAATGTTTTTGAGTTCATTTGATGAGATTCATGTAAATTCTTGGTCTTCCATTTCTCAATTTGAACTGGGCATTCCCTCTTTGTTTGTATGATTTGATCCAAGAAATTCCGGGGTTTTAGAGTTTAGATACTTTAAGGGTAGTTGTTGAGTATATGGCAGCAAATTCTTGAGCTGTTTTGAGCTTTATCAAGGAGATTAAAGCTCTATTCTCTTGGCCTGGTTTGATTTGATATTTCTAGTTTATGATTGTTCCTTGTATGTTCTGGATTTTACTGGTTTGGTATGATTTTAACAAGAATAAAGAATAAGCCATAAGAATGAGGCAAAGAGAACACTTGTCCGCACCAATTATATACGTTTCGGGTTTTTCAAGGATATGTGGTTCAAGTTTTAATTTTTAAATAAAGATTAATGTTACATGAATTGGTTACAGATTTAAGTGATGTGACCTAAATTGGAAATGGTTTGATGCAATTAAAAGTAAGCTAAATGACTCAAAATGTAGTTGAACTTGGTGATCATATGAGGTCGAAATTTTTGAATTGGAACTGAGATTGGTATTGTGGTATGGTTTAACAGGTACAAGTGATGTGGGCAAGTGAAATGAATGGAGAAGCAGGAGTTGGGGAGGAAAGGGAGAGAAAGAGTCGGAATGAGAGTGTGAGCCCGAATGCAAACACGTCGAAGCTGTTGAAGGGGGAGGCGCCATTGAGTAGACATGGAAGGGGGAATAGGTTGAGTTCAGCCATTGTTAACCCCAATGCTAGCAGTAGTACTAGTTCTGTGTTGGATGCCCCATTTAAGGGCAGAGAAATTGTTGCTTATGATGATCTCTTTTAGTTGTAATAGAGATTCATGTATATTATTCGAGCTTTTTCGATTTTGTTGAGCTTCCTTTGCCCTCATTCTTGTGTAAGATTACAAATTTTTAGTTGCTGTGTTGTTGGTTTTAGTTTCTCTGATGCCTGAACTGTGAAGTTTTTGATGTAATCCACAGATGTCATGTAATTACATATGAAGTCTCGGTATTTTTTTTTTTTCATAATCTCCATTCTTGAATGTTGATGAGAAACTATCCTTTGGTCCACTTCGACAACAAAGATTCAAATCTAGCCAAAGTACAGAGTCCCCGATGTTTGTACATACTCCCATCACTATGCATCAGAGTAGTTCCTGATCTATATCAAGTAAGGGGCTTAGTTTGGCGGTAGGAATTCCTTGCTCTTCCCTCCCACTCTTAAATCGTGATTTTTATACAACCAA

mRNA sequence

ATACAACAGATCAGTCCGCAAAAAGGACAATCCCTTTCAAGTTTCAAGTTTCAAGTTTCTCTATTTGCTACGCAGATACAAACGCTACATTCCCATTTCCCACCAAACAAAGCCACATTAATTAGTAGACTCAACTAGCCATGAGCCGAAAGAGAGATAAACCCTACAATAACTCCCGCCATGTCCCATACTCCTACCCAAAGCGGCGCCGCCCTATGCCGCCACCACCACCTCCTCTGGTAGAAGAACCACCCAAAGAAAAACCAGCCCCACCACCAGCAGTTGTGGTGATTGGGCTCCAAGATGGCTGCTCAGTGTTGGACCTCAAGTCTAGGTTAGAAATATACGGGCCCATATCTCGGATCCGGATAGACCAACAAGGTGTCGGCTTTATCTCTTTCCGGTCTAAATCCGCCGCTGATTCAGCAATCTCCGCCTCCCTTGACCCCTCCTTCGGCATTTCCATCGACTCCCACCGCGTACAAGTGATGTGGGCAAGTGAAATGAATGGAGAAGCAGGAGTTGGGGAGGAAAGGGAGAGAAAGAGTCGGAATGAGAGTGTGAGCCCGAATGCAAACACGTCGAAGCTGTTGAAGGGGGAGGCGCCATTGAGTAGACATGGAAGGGGGAATAGGTTGAGTTCAGCCATTGTTAACCCCAATGCTAGCAGTAGTACTAGTTCTGTGTTGGATGCCCCATTTAAGGGCAGAGAAATTGTTGCTTATGATGATCTCTTTTAGTTGTAATAGAGATTCATGTATATTATTCGAGCTTTTTCGATTTTGTTGAGCTTCCTTTGCCCTCATTCTTGTGTAAGATTACAAATTTTTAGTTGCTGTGTTGTTGGTTTTAGTTTCTCTGATGCCTGAACTGTGAAGTTTTTGATGTAATCCACAGATGTCATGTAATTACATATGAAGTCTCGGTATTTTTTTTTTTTCATAATCTCCATTCTTGAATGTTGATGAGAAACTATCCTTTGGTCCACTTCGACAACAAAGATTCAAATCTAGCCAAAGTACAGAGTCCCCGATGTTTGTACATACTCCCATCACTATGCATCAGAGTAGTTCCTGATCTATATCAAGTAAGGGGCTTAGTTTGGCGGTAGGAATTCCTTGCTCTTCCCTCCCACTCTTAAATCGTGATTTTTATACAACCAA

Coding sequence (CDS)

ATGAGCCGAAAGAGAGATAAACCCTACAATAACTCCCGCCATGTCCCATACTCCTACCCAAAGCGGCGCCGCCCTATGCCGCCACCACCACCTCCTCTGGTAGAAGAACCACCCAAAGAAAAACCAGCCCCACCACCAGCAGTTGTGGTGATTGGGCTCCAAGATGGCTGCTCAGTGTTGGACCTCAAGTCTAGGTTAGAAATATACGGGCCCATATCTCGGATCCGGATAGACCAACAAGGTGTCGGCTTTATCTCTTTCCGGTCTAAATCCGCCGCTGATTCAGCAATCTCCGCCTCCCTTGACCCCTCCTTCGGCATTTCCATCGACTCCCACCGCGTACAAGTGATGTGGGCAAGTGAAATGAATGGAGAAGCAGGAGTTGGGGAGGAAAGGGAGAGAAAGAGTCGGAATGAGAGTGTGAGCCCGAATGCAAACACGTCGAAGCTGTTGAAGGGGGAGGCGCCATTGAGTAGACATGGAAGGGGGAATAGGTTGAGTTCAGCCATTGTTAACCCCAATGCTAGCAGTAGTACTAGTTCTGTGTTGGATGCCCCATTTAAGGGCAGAGAAATTGTTGCTTATGATGATCTCTTTTAG

Protein sequence

MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVEEPPKEKPAPPPAVVVIGLQDGCSVLDLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMWASEMNGEAGVGEERERKSRNESVSPNANTSKLLKGEAPLSRHGRGNRLSSAIVNPNASSSTSSVLDAPFKGREIVAYDDLF
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo25742.1Spo25742.1mRNA


Homology
[Close]
BLAST of Spo25742.1 vs. NCBI nr
Match: gi|902036361|gb|KNA02645.1| (hypothetical protein SOVF_216700 [Spinacia oleracea])

HSP 1 Score: 377.1 bits (967), Expect = 1.900e-101
Identity = 198/199 (99.50%), Postives = 198/199 (99.50%), Query Frame = 1 

		  

Query: 1   MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVEEPPKEKPAPPPAVVVIGLQDGCSVL 60
           MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVEEPPKEKPAPPPAVVVIGLQDGCSVL
Sbjct: 1   MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVEEPPKEKPAPPPAVVVIGLQDGCSVL 60

Query: 61  DLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMWAS 120
           DLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMWAS
Sbjct: 61  DLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMWAS 120

Query: 121 EMNGEAGVGEERERKSRNESVSPNANTSKLLKGEAPLSRHGRGNRLSSAIVNPNASSSTS 180
           EMNGEAGVGEERERKSRNESVSPNANTSKLLKGEAPLSRHGRGNRLSSAIVNPNASSSTS
Sbjct: 121 EMNGEAGVGEERERKSRNESVSPNANTSKLLKGEAPLSRHGRGNRLSSAIVNPNASSSTS 180

Query: 181 SVLDAPFKGREIVAYDDLF 200
           SVLDAPFK REIVAYDDLF
Sbjct: 181 SVLDAPFKAREIVAYDDLF 199
[Close]
BLAST of Spo25742.1 vs. NCBI nr
Match: gi|731344179|ref|XP_010683273.1| (PREDICTED: uncharacterized protein At1g27050 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 283.1 bits (723), Expect = 3.700e-73
Identity = 157/203 (77.34%), Postives = 175/203 (86.21%), Query Frame = 1 

		  

Query: 1   MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVEEPPKEKPAPPPAVVVIGLQDGCSVL 60
           MSRKR+KPYN SRHVPYSYPKRRRP+   PPP  EEPP++KPAPPPAVVVIGL + CSVL
Sbjct: 1   MSRKREKPYN-SRHVPYSYPKRRRPL---PPPAAEEPPQQKPAPPPAVVVIGLPEDCSVL 60

Query: 61  DLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMWAS 120
           DLKSR EIYGPISRIRI+QQGVGFISFRSKSAADSA++ASLDPSFGISI SHRVQVMWAS
Sbjct: 61  DLKSRFEIYGPISRIRIEQQGVGFISFRSKSAADSALTASLDPSFGISIHSHRVQVMWAS 120

Query: 121 EMNGEAGVGEERERKSRNESVS--PNANTSKLLKGEAPLSRHGRGNRLSSAIVNPNA--S 180
           EM GEA VG+E  R + N + +    + +SKLLKGE PLSR GRGN+LSSAIVNPNA  S
Sbjct: 121 EMKGEAAVGDEGRRNNSNSNSNSYSYSYSSKLLKGETPLSRLGRGNKLSSAIVNPNASTS 180

Query: 181 SSTSSVLDAPFKGREIVAYDDLF 200
           S+TSS+LD PFKGREIVAYDD+F
Sbjct: 181 SNTSSLLDPPFKGREIVAYDDIF 199
[Close]
BLAST of Spo25742.1 vs. NCBI nr
Match: gi|590693569|ref|XP_007044370.1| (Homeobox-leucine zipper protein ATHB-54 [Theobroma cacao])

HSP 1 Score: 203.0 bits (515), Expect = 4.900e-49
Identity = 120/202 (59.41%), Postives = 151/202 (74.75%), Query Frame = 1 

		  

Query: 1   MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVEEPPKEKPAPPPAVVVIGLQDGCSVL 60
           MSRKRDKPY  SR  P S  KRRRP+PP P P  E+  ++KP PPPAVVV+GL   CSVL
Sbjct: 1   MSRKRDKPYF-SRLGPASISKRRRPLPPYPLPPPED--EDKPTPPPAVVVMGLPPNCSVL 60

Query: 61  DLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMWAS 120
           DLKSR EIYGPISRIRI++  VG+I++RSK +A+SAI+ASLD SFGI+IDS +VQV+WA+
Sbjct: 61  DLKSRFEIYGPISRIRINRDAVGYIAYRSKESAESAIAASLDSSFGITIDSTKVQVLWAT 120

Query: 121 EMNGE----AGVGEERERKSRNESVSPNANTSKLLKGEAPLSRHGRGNRLSSAIVNPNAS 180
           +   +     GVG  ++  S        +++SKLL+ E PLSRHGRGN+L+SAIVNP +S
Sbjct: 121 DPLAKWREGVGVGANKDNGS--------SSSSKLLRPEVPLSRHGRGNKLASAIVNPRSS 180

Query: 181 SSTSSVLDAPFKGREIVAYDDL 199
              SS+L+ PFKGR IVAYDD+
Sbjct: 181 DDGSSMLEVPFKGRGIVAYDDI 191
[Close]
BLAST of Spo25742.1 vs. NCBI nr
Match: gi|823216457|ref|XP_012440943.1| (PREDICTED: uncharacterized protein At1g27050 [Gossypium raimondii])

HSP 1 Score: 196.4 bits (498), Expect = 4.600e-47
Identity = 115/199 (57.79%), Postives = 144/199 (72.36%), Query Frame = 1 

		  

Query: 1   MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVEEPPKEKPAPPPAVVVIGLQDGCSVL 60
           MSRKR+KPY  SRH P S  KRRRP+PP PPP      + KP PPPAV+V+GL   CSVL
Sbjct: 31  MSRKREKPYF-SRHAPASISKRRRPLPPHPPPPPSSENEAKPKPPPAVIVMGLPPNCSVL 90

Query: 61  DLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMWAS 120
           DLKSR EIYG ISRIRI+   VG+I +R+K +A+SAI+ASLD SFGI++DS RVQV+WA+
Sbjct: 91  DLKSRFEIYGSISRIRINCDAVGYIVYRTKESAESAIAASLDSSFGITVDSKRVQVLWAT 150

Query: 121 EMNGEAGVGEERERKSRNESVSPNAN-TSKLLKGEAPLSRHGRGNRLSSAIVNPNASSST 180
           +      + + R+    N +    A  +SKLL+ E PLSRHGR N+L+SAIVNP  +   
Sbjct: 151 D-----PLAQWRDGIGVNANNDKGATCSSKLLRPEVPLSRHGRSNKLASAIVNPRTTDDG 210

Query: 181 SSVLDAPFKGREIVAYDDL 199
           SS+L+ PFKGREIVAYDD+
Sbjct: 211 SSMLELPFKGREIVAYDDI 223
[Close]
BLAST of Spo25742.1 vs. NCBI nr
Match: gi|728837812|gb|KHG17255.1| (hypothetical protein F383_21956 [Gossypium arboreum])

HSP 1 Score: 194.9 bits (494), Expect = 1.300e-46
Identity = 115/199 (57.79%), Postives = 143/199 (71.86%), Query Frame = 1 

		  

Query: 1   MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVEEPPKEKPAPPPAVVVIGLQDGCSVL 60
           MSRKRDKPY  S H P S  KRRRP+PP PPP      + KP PPPAV+V+GL   CSVL
Sbjct: 1   MSRKRDKPYL-SCHAPASISKRRRPLPPHPPPPPSSENEAKPKPPPAVIVMGLPPNCSVL 60

Query: 61  DLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMWAS 120
           DLKSR EIYG ISRIRI+   VG+I +RSK +A+SAI+ASLD SFGI++DS RVQV+WA+
Sbjct: 61  DLKSRFEIYGSISRIRINCDAVGYIVYRSKESAESAIAASLDSSFGITVDSKRVQVLWAT 120

Query: 121 EMNGEAGVGEERERKSRNESVSPNA-NTSKLLKGEAPLSRHGRGNRLSSAIVNPNASSST 180
           +      + + R+    N +    A ++SKLL+ E PLSRHGR N+L+S IVNP  +   
Sbjct: 121 D-----PLAQWRDGIGVNANNDKGATSSSKLLRPEVPLSRHGRSNKLASTIVNPRTTDDG 180

Query: 181 SSVLDAPFKGREIVAYDDL 199
           SS+L+ PFKGREIVAYDD+
Sbjct: 181 SSMLELPFKGREIVAYDDI 193
[Close]
BLAST of Spo25742.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q6K7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_216700 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 1.300e-101
Identity = 198/199 (99.50%), Postives = 198/199 (99.50%), Query Frame = 1 

		  

Query: 1   MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVEEPPKEKPAPPPAVVVIGLQDGCSVL 60
           MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVEEPPKEKPAPPPAVVVIGLQDGCSVL
Sbjct: 1   MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVEEPPKEKPAPPPAVVVIGLQDGCSVL 60

Query: 61  DLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMWAS 120
           DLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMWAS
Sbjct: 61  DLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMWAS 120

Query: 121 EMNGEAGVGEERERKSRNESVSPNANTSKLLKGEAPLSRHGRGNRLSSAIVNPNASSSTS 180
           EMNGEAGVGEERERKSRNESVSPNANTSKLLKGEAPLSRHGRGNRLSSAIVNPNASSSTS
Sbjct: 121 EMNGEAGVGEERERKSRNESVSPNANTSKLLKGEAPLSRHGRGNRLSSAIVNPNASSSTS 180

Query: 181 SVLDAPFKGREIVAYDDLF 200
           SVLDAPFK REIVAYDDLF
Sbjct: 181 SVLDAPFKAREIVAYDDLF 199
[Close]
BLAST of Spo25742.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C4J9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g154720 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 2.600e-73
Identity = 157/203 (77.34%), Postives = 175/203 (86.21%), Query Frame = 1 

		  

Query: 1   MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVEEPPKEKPAPPPAVVVIGLQDGCSVL 60
           MSRKR+KPYN SRHVPYSYPKRRRP+   PPP  EEPP++KPAPPPAVVVIGL + CSVL
Sbjct: 1   MSRKREKPYN-SRHVPYSYPKRRRPL---PPPAAEEPPQQKPAPPPAVVVIGLPEDCSVL 60

Query: 61  DLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMWAS 120
           DLKSR EIYGPISRIRI+QQGVGFISFRSKSAADSA++ASLDPSFGISI SHRVQVMWAS
Sbjct: 61  DLKSRFEIYGPISRIRIEQQGVGFISFRSKSAADSALTASLDPSFGISIHSHRVQVMWAS 120

Query: 121 EMNGEAGVGEERERKSRNESVS--PNANTSKLLKGEAPLSRHGRGNRLSSAIVNPNA--S 180
           EM GEA VG+E  R + N + +    + +SKLLKGE PLSR GRGN+LSSAIVNPNA  S
Sbjct: 121 EMKGEAAVGDEGRRNNSNSNSNSYSYSYSSKLLKGETPLSRLGRGNKLSSAIVNPNASTS 180

Query: 181 SSTSSVLDAPFKGREIVAYDDLF 200
           S+TSS+LD PFKGREIVAYDD+F
Sbjct: 181 SNTSSLLDPPFKGREIVAYDDIF 199
[Close]
BLAST of Spo25742.1 vs. UniProtKB/TrEMBL
Match: A0A061E795_THECC (Homeobox-leucine zipper protein ATHB-54 OS=Theobroma cacao GN=TCM_009958 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.400e-49
Identity = 120/202 (59.41%), Postives = 151/202 (74.75%), Query Frame = 1 

		  

Query: 1   MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVEEPPKEKPAPPPAVVVIGLQDGCSVL 60
           MSRKRDKPY  SR  P S  KRRRP+PP P P  E+  ++KP PPPAVVV+GL   CSVL
Sbjct: 1   MSRKRDKPYF-SRLGPASISKRRRPLPPYPLPPPED--EDKPTPPPAVVVMGLPPNCSVL 60

Query: 61  DLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMWAS 120
           DLKSR EIYGPISRIRI++  VG+I++RSK +A+SAI+ASLD SFGI+IDS +VQV+WA+
Sbjct: 61  DLKSRFEIYGPISRIRINRDAVGYIAYRSKESAESAIAASLDSSFGITIDSTKVQVLWAT 120

Query: 121 EMNGE----AGVGEERERKSRNESVSPNANTSKLLKGEAPLSRHGRGNRLSSAIVNPNAS 180
           +   +     GVG  ++  S        +++SKLL+ E PLSRHGRGN+L+SAIVNP +S
Sbjct: 121 DPLAKWREGVGVGANKDNGS--------SSSSKLLRPEVPLSRHGRGNKLASAIVNPRSS 180

Query: 181 SSTSSVLDAPFKGREIVAYDDL 199
              SS+L+ PFKGR IVAYDD+
Sbjct: 181 DDGSSMLEVPFKGRGIVAYDDI 191
[Close]
BLAST of Spo25742.1 vs. UniProtKB/TrEMBL
Match: A0A0D2TZZ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G347100 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.200e-47
Identity = 115/199 (57.79%), Postives = 144/199 (72.36%), Query Frame = 1 

		  

Query: 1   MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVEEPPKEKPAPPPAVVVIGLQDGCSVL 60
           MSRKR+KPY  SRH P S  KRRRP+PP PPP      + KP PPPAV+V+GL   CSVL
Sbjct: 31  MSRKREKPYF-SRHAPASISKRRRPLPPHPPPPPSSENEAKPKPPPAVIVMGLPPNCSVL 90

Query: 61  DLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMWAS 120
           DLKSR EIYG ISRIRI+   VG+I +R+K +A+SAI+ASLD SFGI++DS RVQV+WA+
Sbjct: 91  DLKSRFEIYGSISRIRINCDAVGYIVYRTKESAESAIAASLDSSFGITVDSKRVQVLWAT 150

Query: 121 EMNGEAGVGEERERKSRNESVSPNAN-TSKLLKGEAPLSRHGRGNRLSSAIVNPNASSST 180
           +      + + R+    N +    A  +SKLL+ E PLSRHGR N+L+SAIVNP  +   
Sbjct: 151 D-----PLAQWRDGIGVNANNDKGATCSSKLLRPEVPLSRHGRSNKLASAIVNPRTTDDG 210

Query: 181 SSVLDAPFKGREIVAYDDL 199
           SS+L+ PFKGREIVAYDD+
Sbjct: 211 SSMLELPFKGREIVAYDDI 223
[Close]
BLAST of Spo25742.1 vs. UniProtKB/TrEMBL
Match: A0A0B0NWR6_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_21956 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 9.300e-47
Identity = 115/199 (57.79%), Postives = 143/199 (71.86%), Query Frame = 1 

		  

Query: 1   MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVEEPPKEKPAPPPAVVVIGLQDGCSVL 60
           MSRKRDKPY  S H P S  KRRRP+PP PPP      + KP PPPAV+V+GL   CSVL
Sbjct: 1   MSRKRDKPYL-SCHAPASISKRRRPLPPHPPPPPSSENEAKPKPPPAVIVMGLPPNCSVL 60

Query: 61  DLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMWAS 120
           DLKSR EIYG ISRIRI+   VG+I +RSK +A+SAI+ASLD SFGI++DS RVQV+WA+
Sbjct: 61  DLKSRFEIYGSISRIRINCDAVGYIVYRSKESAESAIAASLDSSFGITVDSKRVQVLWAT 120

Query: 121 EMNGEAGVGEERERKSRNESVSPNA-NTSKLLKGEAPLSRHGRGNRLSSAIVNPNASSST 180
           +      + + R+    N +    A ++SKLL+ E PLSRHGR N+L+S IVNP  +   
Sbjct: 121 D-----PLAQWRDGIGVNANNDKGATSSSKLLRPEVPLSRHGRSNKLASTIVNPRTTDDG 180

Query: 181 SSVLDAPFKGREIVAYDDL 199
           SS+L+ PFKGREIVAYDD+
Sbjct: 181 SSMLELPFKGREIVAYDDI 193
[Close]
BLAST of Spo25742.1 vs. ExPASy Swiss-Prot
Match: Y1705_ARATH (Uncharacterized protein At1g27050 OS=Arabidopsis thaliana GN=At1g27050 PE=2 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.400e-35
Identity = 101/213 (47.42%), Postives = 136/213 (63.85%), Query Frame = 1 

		  

Query: 1   MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVE--EPPKEKPAPPPAVVVIGLQDGCS 60
           MSRKRDKPY N RH P    KRRRP  P      E  + P  KP PPPA+VV+GL   CS
Sbjct: 1   MSRKRDKPYTN-RHTPARISKRRRPWAPSSSEHDEIIDKPITKPPPPPALVVMGLPANCS 60

Query: 61  VLDLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMW 120
           VL+LKSR EIYG ISRIRI + G+G +S+R+  +A++AI+ S +PSFGISIDS +++V+W
Sbjct: 61  VLELKSRFEIYGSISRIRIHKDGIGSVSYRTAESAEAAIAGSHEPSFGISIDSKKLEVVW 120

Query: 121 ASE--MNGEAGV--GEERERKSRNESVSPNANTSKLLKGEAPLSRHGRGNRLSSAIVNPN 180
           A++  +  + GV  GE +ER S        + +SKLL+   PL +HGR +RL+SAIVNP 
Sbjct: 121 ATDPLVKWKEGVTAGEGKERTS--------SFSSKLLRPVMPLRKHGRSSRLASAIVNPR 180

Query: 181 ASSS---------TSSVLDAPFKGREIVAYDDL 199
           + ++         +S    +  K R IV YDD+
Sbjct: 181 SDNTKGISGDGGISSPATTSEVKQRNIVTYDDI 204
[Close]
BLAST of Spo25742.1 vs. TAIR (Arabidopsis)
Match: AT1G27050.1 (homeobox protein 54)

HSP 1 Score: 151.0 bits (380), Expect = 7.800e-37
Identity = 101/213 (47.42%), Postives = 136/213 (63.85%), Query Frame = 1 

		  

Query: 1   MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVE--EPPKEKPAPPPAVVVIGLQDGCS 60
           MSRKRDKPY N RH P    KRRRP  P      E  + P  KP PPPA+VV+GL   CS
Sbjct: 1   MSRKRDKPYTN-RHTPARISKRRRPWAPSSSEHDEIIDKPITKPPPPPALVVMGLPANCS 60

Query: 61  VLDLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMW 120
           VL+LKSR EIYG ISRIRI + G+G +S+R+  +A++AI+ S +PSFGISIDS +++V+W
Sbjct: 61  VLELKSRFEIYGSISRIRIHKDGIGSVSYRTAESAEAAIAGSHEPSFGISIDSKKLEVVW 120

Query: 121 ASE--MNGEAGV--GEERERKSRNESVSPNANTSKLLKGEAPLSRHGRGNRLSSAIVNPN 180
           A++  +  + GV  GE +ER S        + +SKLL+   PL +HGR +RL+SAIVNP 
Sbjct: 121 ATDPLVKWKEGVTAGEGKERTS--------SFSSKLLRPVMPLRKHGRSSRLASAIVNPR 180

Query: 181 ASSS---------TSSVLDAPFKGREIVAYDDL 199
           + ++         +S    +  K R IV YDD+
Sbjct: 181 SDNTKGISGDGGISSPATTSEVKQRNIVTYDDI 204
The following BLAST results are available for this feature:
BLAST of Spo25742.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902036361|gb|KNA02645.1|1.9e-10199.5hypothetical protein SOVF_2167... [more]
gi|731344179|ref|XP_010683273.1|3.7e-7377.3PREDICTED: uncharacterized pro... [more]
gi|590693569|ref|XP_007044370.1|4.9e-4959.4Homeobox-leucine zipper protei... [more]
gi|823216457|ref|XP_012440943.1|4.6e-4757.7PREDICTED: uncharacterized pro... [more]
gi|728837812|gb|KHG17255.1|1.3e-4657.7hypothetical protein F383_2195... [more]
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BLAST of Spo25742.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9Q6K7_SPIOL1.3e-10199.5Uncharacterized protein OS=Spi... [more]
A0A0J8C4J9_BETVU2.6e-7377.3Uncharacterized protein OS=Bet... [more]
A0A061E795_THECC3.4e-4959.4Homeobox-leucine zipper protei... [more]
A0A0D2TZZ4_GOSRA3.2e-4757.7Uncharacterized protein OS=Gos... [more]
A0A0B0NWR6_GOSAR9.3e-4757.7Uncharacterized protein OS=Gos... [more]
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BLAST of Spo25742.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1705_ARATH1.4e-3547.4Uncharacterized protein At1g27... [more]
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BLAST of Spo25742.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G27050.17.8e-3747.4homeobox protein 54[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 48..98
score: 3.
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 47..117
score: 9.
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 46..121
score: 10
IPR012677Nucleotide-binding alpha-beta plait domainGENE3D3.30.70.330coord: 22..124
score: 2.6
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 15..119
score: 1.63

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030003 cellular cation homeostasis
biological_process GO:0009734 auxin-activated signaling pathway
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0070838 divalent metal ion transport
biological_process GO:0042742 defense response to bacterium
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0031012 extracellular matrix
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0009505 plant-type cell wall
cellular_component GO:0005634 nucleus
cellular_component GO:0005840 ribosome
cellular_component GO:0048046 apoplast
molecular_function GO:0030145 manganese ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0005515 protein binding
molecular_function GO:0045735 nutrient reservoir activity
RNA-Seq Expression