Spo25742 (gene) | SpinachBase

Overview


Name	Spo25742
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	homeobox protein 54
Location	chr1 : 39043062 .. 39044875 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATACAACAGATCAGTCCGCAAAAAGGACAATCCCTTTCAAGTTTCAAGTTTCAAGTTTCTCTATTTGCTACGCAGATACAAACGCTACATTCCCATTTCCCACCAAACAAAGCCACATTAATTAGTAGACTCAACTAGCCATGAGCCGAAAGAGAGATAAACCCTACAATAACTCCCGCCATGTCCCATACTCCTACCCAAAGCGGCGCCGCCCTATGCCGCCACCACCACCTCCTCTGGTAGAAGAACCACCCAAAGAAAAACCAGCCCCACCACCAGCAGTTGTGGTGATTGGGCTCCAAGATGGCTGCTCAGTGTTGGACCTCAAGTCTAGGTTAGAAATATACGGGCCCATATCTCGGATCCGGATAGACCAACAAGGTGTCGGCTTTATCTCTTTCCGGTCTAAATCCGCCGCTGATTCAGCAATCTCCGCCTCCCTTGACCCCTCCTTCGGCATTTCCATCGACTCCCACCGCGTATTTCTCTCTCTTTTAATTATTGTTTTTCAGCTTCCTAATTTGGATTTTTATTTGGGTTTCCGAATTTGGAATGTTTTTGAGTTCATTTGATGAGATTCATGTAAATTCTTGGTCTTCCATTTCTCAATTTGAACTGGGCATTCCCTCTTTGTTTGTATGATTTGATCCAAGAAATTCCGGGGTTTTAGAGTTTAGATACTTTAAGGGTAGTTGTTGAGTATATGGCAGCAAATTCTTGAGCTGTTTTGAGCTTTATCAAGGAGATTAAAGCTCTATTCTCTTGGCCTGGTTTGATTTGATATTTCTAGTTTATGATTGTTCCTTGTATGTTCTGGATTTTACTGGTTTGGTATGATTTTAACAAGAATAAAGAATAAGCCATAAGAATGAGGCAAAGAGAACACTTGTCCGCACCAATTATATACGTTTCGGGTTTTTCAAGGATATGTGGTTCAAGTTTTAATTTTTAAATAAAGATTAATGTTACATGAATTGGTTACAGATTTAAGTGATGTGACCTAAATTGGAAATGGTTTGATGCAATTAAAAGTAAGCTAAATGACTCAAAATGTAGTTGAACTTGGTGATCATATGAGGTCGAAATTTTTGAATTGGAACTGAGATTGGTATTGTGGTATGGTTTAACAGGTACAAGTGATGTGGGCAAGTGAAATGAATGGAGAAGCAGGAGTTGGGGAGGAAAGGGAGAGAAAGAGTCGGAATGAGAGTGTGAGCCCGAATGCAAACACGTCGAAGCTGTTGAAGGGGGAGGCGCCATTGAGTAGACATGGAAGGGGGAATAGGTTGAGTTCAGCCATTGTTAACCCCAATGCTAGCAGTAGTACTAGTTCTGTGTTGGATGCCCCATTTAAGGGCAGAGAAATTGTTGCTTATGATGATCTCTTTTAGTTGTAATAGAGATTCATGTATATTATTCGAGCTTTTTCGATTTTGTTGAGCTTCCTTTGCCCTCATTCTTGTGTAAGATTACAAATTTTTAGTTGCTGTGTTGTTGGTTTTAGTTTCTCTGATGCCTGAACTGTGAAGTTTTTGATGTAATCCACAGATGTCATGTAATTACATATGAAGTCTCGGTATTTTTTTTTTTTCATAATCTCCATTCTTGAATGTTGATGAGAAACTATCCTTTGGTCCACTTCGACAACAAAGATTCAAATCTAGCCAAAGTACAGAGTCCCCGATGTTTGTACATACTCCCATCACTATGCATCAGAGTAGTTCCTGATCTATATCAAGTAAGGGGCTTAGTTTGGCGGTAGGAATTCCTTGCTCTTCCCTCCCACTCTTAAATCGTGATTTTTATACAACCAA

mRNA sequence

ATACAACAGATCAGTCCGCAAAAAGGACAATCCCTTTCAAGTTTCAAGTTTCAAGTTTCTCTATTTGCTACGCAGATACAAACGCTACATTCCCATTTCCCACCAAACAAAGCCACATTAATTAGTAGACTCAACTAGCCATGAGCCGAAAGAGAGATAAACCCTACAATAACTCCCGCCATGTCCCATACTCCTACCCAAAGCGGCGCCGCCCTATGCCGCCACCACCACCTCCTCTGGTAGAAGAACCACCCAAAGAAAAACCAGCCCCACCACCAGCAGTTGTGGTGATTGGGCTCCAAGATGGCTGCTCAGTGTTGGACCTCAAGTCTAGGTTAGAAATATACGGGCCCATATCTCGGATCCGGATAGACCAACAAGGTGTCGGCTTTATCTCTTTCCGGTCTAAATCCGCCGCTGATTCAGCAATCTCCGCCTCCCTTGACCCCTCCTTCGGCATTTCCATCGACTCCCACCGCGTACAAGTGATGTGGGCAAGTGAAATGAATGGAGAAGCAGGAGTTGGGGAGGAAAGGGAGAGAAAGAGTCGGAATGAGAGTGTGAGCCCGAATGCAAACACGTCGAAGCTGTTGAAGGGGGAGGCGCCATTGAGTAGACATGGAAGGGGGAATAGGTTGAGTTCAGCCATTGTTAACCCCAATGCTAGCAGTAGTACTAGTTCTGTGTTGGATGCCCCATTTAAGGGCAGAGAAATTGTTGCTTATGATGATCTCTTTTAGTTGTAATAGAGATTCATGTATATTATTCGAGCTTTTTCGATTTTGTTGAGCTTCCTTTGCCCTCATTCTTGTGTAAGATTACAAATTTTTAGTTGCTGTGTTGTTGGTTTTAGTTTCTCTGATGCCTGAACTGTGAAGTTTTTGATGTAATCCACAGATGTCATGTAATTACATATGAAGTCTCGGTATTTTTTTTTTTTCATAATCTCCATTCTTGAATGTTGATGAGAAACTATCCTTTGGTCCACTTCGACAACAAAGATTCAAATCTAGCCAAAGTACAGAGTCCCCGATGTTTGTACATACTCCCATCACTATGCATCAGAGTAGTTCCTGATCTATATCAAGTAAGGGGCTTAGTTTGGCGGTAGGAATTCCTTGCTCTTCCCTCCCACTCTTAAATCGTGATTTTTATACAACCAA

Coding sequence (CDS)

ATGAGCCGAAAGAGAGATAAACCCTACAATAACTCCCGCCATGTCCCATACTCCTACCCAAAGCGGCGCCGCCCTATGCCGCCACCACCACCTCCTCTGGTAGAAGAACCACCCAAAGAAAAACCAGCCCCACCACCAGCAGTTGTGGTGATTGGGCTCCAAGATGGCTGCTCAGTGTTGGACCTCAAGTCTAGGTTAGAAATATACGGGCCCATATCTCGGATCCGGATAGACCAACAAGGTGTCGGCTTTATCTCTTTCCGGTCTAAATCCGCCGCTGATTCAGCAATCTCCGCCTCCCTTGACCCCTCCTTCGGCATTTCCATCGACTCCCACCGCGTACAAGTGATGTGGGCAAGTGAAATGAATGGAGAAGCAGGAGTTGGGGAGGAAAGGGAGAGAAAGAGTCGGAATGAGAGTGTGAGCCCGAATGCAAACACGTCGAAGCTGTTGAAGGGGGAGGCGCCATTGAGTAGACATGGAAGGGGGAATAGGTTGAGTTCAGCCATTGTTAACCCCAATGCTAGCAGTAGTACTAGTTCTGTGTTGGATGCCCCATTTAAGGGCAGAGAAATTGTTGCTTATGATGATCTCTTTTAG

Protein sequence

MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVEEPPKEKPAPPPAVVVIGLQDGCSVLDLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMWASEMNGEAGVGEERERKSRNESVSPNANTSKLLKGEAPLSRHGRGNRLSSAIVNPNASSSTSSVLDAPFKGREIVAYDDLF

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo25742.1	Spo25742.1	mRNA

Homology

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BLAST of Spo25742.1 vs. NCBI nr
Match: gi|902036361|gb|KNA02645.1| (hypothetical protein SOVF_216700 [Spinacia oleracea])

HSP 1 Score: 377.1 bits (967), Expect = 1.900e-101
Identity = 198/199 (99.50%), Postives = 198/199 (99.50%), Query Frame = 1

		  
Query: 1   MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVEEPPKEKPAPPPAVVVIGLQDGCSVL 60
           MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVEEPPKEKPAPPPAVVVIGLQDGCSVL
Sbjct: 1   MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVEEPPKEKPAPPPAVVVIGLQDGCSVL 60

Query: 61  DLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMWAS 120
           DLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMWAS
Sbjct: 61  DLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMWAS 120

Query: 121 EMNGEAGVGEERERKSRNESVSPNANTSKLLKGEAPLSRHGRGNRLSSAIVNPNASSSTS 180
           EMNGEAGVGEERERKSRNESVSPNANTSKLLKGEAPLSRHGRGNRLSSAIVNPNASSSTS
Sbjct: 121 EMNGEAGVGEERERKSRNESVSPNANTSKLLKGEAPLSRHGRGNRLSSAIVNPNASSSTS 180

Query: 181 SVLDAPFKGREIVAYDDLF 200
           SVLDAPFK REIVAYDDLF
Sbjct: 181 SVLDAPFKAREIVAYDDLF 199

[Close]

BLAST of Spo25742.1 vs. NCBI nr
Match: gi|731344179|ref|XP_010683273.1| (PREDICTED: uncharacterized protein At1g27050 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 283.1 bits (723), Expect = 3.700e-73
Identity = 157/203 (77.34%), Postives = 175/203 (86.21%), Query Frame = 1

		  
Query: 1   MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVEEPPKEKPAPPPAVVVIGLQDGCSVL 60
           MSRKR+KPYN SRHVPYSYPKRRRP+   PPP  EEPP++KPAPPPAVVVIGL + CSVL
Sbjct: 1   MSRKREKPYN-SRHVPYSYPKRRRPL---PPPAAEEPPQQKPAPPPAVVVIGLPEDCSVL 60

Query: 61  DLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMWAS 120
           DLKSR EIYGPISRIRI+QQGVGFISFRSKSAADSA++ASLDPSFGISI SHRVQVMWAS
Sbjct: 61  DLKSRFEIYGPISRIRIEQQGVGFISFRSKSAADSALTASLDPSFGISIHSHRVQVMWAS 120

Query: 121 EMNGEAGVGEERERKSRNESVS--PNANTSKLLKGEAPLSRHGRGNRLSSAIVNPNA--S 180
           EM GEA VG+E  R + N + +    + +SKLLKGE PLSR GRGN+LSSAIVNPNA  S
Sbjct: 121 EMKGEAAVGDEGRRNNSNSNSNSYSYSYSSKLLKGETPLSRLGRGNKLSSAIVNPNASTS 180

Query: 181 SSTSSVLDAPFKGREIVAYDDLF 200
           S+TSS+LD PFKGREIVAYDD+F
Sbjct: 181 SNTSSLLDPPFKGREIVAYDDIF 199

[Close]

BLAST of Spo25742.1 vs. NCBI nr
Match: gi|590693569|ref|XP_007044370.1| (Homeobox-leucine zipper protein ATHB-54 [Theobroma cacao])

HSP 1 Score: 203.0 bits (515), Expect = 4.900e-49
Identity = 120/202 (59.41%), Postives = 151/202 (74.75%), Query Frame = 1

		  
Query: 1   MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVEEPPKEKPAPPPAVVVIGLQDGCSVL 60
           MSRKRDKPY  SR  P S  KRRRP+PP P P  E+  ++KP PPPAVVV+GL   CSVL
Sbjct: 1   MSRKRDKPYF-SRLGPASISKRRRPLPPYPLPPPED--EDKPTPPPAVVVMGLPPNCSVL 60

Query: 61  DLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMWAS 120
           DLKSR EIYGPISRIRI++  VG+I++RSK +A+SAI+ASLD SFGI+IDS +VQV+WA+
Sbjct: 61  DLKSRFEIYGPISRIRINRDAVGYIAYRSKESAESAIAASLDSSFGITIDSTKVQVLWAT 120

Query: 121 EMNGE----AGVGEERERKSRNESVSPNANTSKLLKGEAPLSRHGRGNRLSSAIVNPNAS 180
           +   +     GVG  ++  S        +++SKLL+ E PLSRHGRGN+L+SAIVNP +S
Sbjct: 121 DPLAKWREGVGVGANKDNGS--------SSSSKLLRPEVPLSRHGRGNKLASAIVNPRSS 180

Query: 181 SSTSSVLDAPFKGREIVAYDDL 199
              SS+L+ PFKGR IVAYDD+
Sbjct: 181 DDGSSMLEVPFKGRGIVAYDDI 191

[Close]

BLAST of Spo25742.1 vs. NCBI nr
Match: gi|823216457|ref|XP_012440943.1| (PREDICTED: uncharacterized protein At1g27050 [Gossypium raimondii])

HSP 1 Score: 196.4 bits (498), Expect = 4.600e-47
Identity = 115/199 (57.79%), Postives = 144/199 (72.36%), Query Frame = 1

		  
Query: 1   MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVEEPPKEKPAPPPAVVVIGLQDGCSVL 60
           MSRKR+KPY  SRH P S  KRRRP+PP PPP      + KP PPPAV+V+GL   CSVL
Sbjct: 31  MSRKREKPYF-SRHAPASISKRRRPLPPHPPPPPSSENEAKPKPPPAVIVMGLPPNCSVL 90

Query: 61  DLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMWAS 120
           DLKSR EIYG ISRIRI+   VG+I +R+K +A+SAI+ASLD SFGI++DS RVQV+WA+
Sbjct: 91  DLKSRFEIYGSISRIRINCDAVGYIVYRTKESAESAIAASLDSSFGITVDSKRVQVLWAT 150

Query: 121 EMNGEAGVGEERERKSRNESVSPNAN-TSKLLKGEAPLSRHGRGNRLSSAIVNPNASSST 180
           +      + + R+    N +    A  +SKLL+ E PLSRHGR N+L+SAIVNP  +   
Sbjct: 151 D-----PLAQWRDGIGVNANNDKGATCSSKLLRPEVPLSRHGRSNKLASAIVNPRTTDDG 210

Query: 181 SSVLDAPFKGREIVAYDDL 199
           SS+L+ PFKGREIVAYDD+
Sbjct: 211 SSMLELPFKGREIVAYDDI 223

[Close]

BLAST of Spo25742.1 vs. NCBI nr
Match: gi|728837812|gb|KHG17255.1| (hypothetical protein F383_21956 [Gossypium arboreum])

HSP 1 Score: 194.9 bits (494), Expect = 1.300e-46
Identity = 115/199 (57.79%), Postives = 143/199 (71.86%), Query Frame = 1

		  
Query: 1   MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVEEPPKEKPAPPPAVVVIGLQDGCSVL 60
           MSRKRDKPY  S H P S  KRRRP+PP PPP      + KP PPPAV+V+GL   CSVL
Sbjct: 1   MSRKRDKPYL-SCHAPASISKRRRPLPPHPPPPPSSENEAKPKPPPAVIVMGLPPNCSVL 60

Query: 61  DLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMWAS 120
           DLKSR EIYG ISRIRI+   VG+I +RSK +A+SAI+ASLD SFGI++DS RVQV+WA+
Sbjct: 61  DLKSRFEIYGSISRIRINCDAVGYIVYRSKESAESAIAASLDSSFGITVDSKRVQVLWAT 120

Query: 121 EMNGEAGVGEERERKSRNESVSPNA-NTSKLLKGEAPLSRHGRGNRLSSAIVNPNASSST 180
           +      + + R+    N +    A ++SKLL+ E PLSRHGR N+L+S IVNP  +   
Sbjct: 121 D-----PLAQWRDGIGVNANNDKGATSSSKLLRPEVPLSRHGRSNKLASTIVNPRTTDDG 180

Query: 181 SSVLDAPFKGREIVAYDDL 199
           SS+L+ PFKGREIVAYDD+
Sbjct: 181 SSMLELPFKGREIVAYDDI 193

[Close]

BLAST of Spo25742.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q6K7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_216700 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 1.300e-101
Identity = 198/199 (99.50%), Postives = 198/199 (99.50%), Query Frame = 1

		  
Query: 1   MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVEEPPKEKPAPPPAVVVIGLQDGCSVL 60
           MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVEEPPKEKPAPPPAVVVIGLQDGCSVL
Sbjct: 1   MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVEEPPKEKPAPPPAVVVIGLQDGCSVL 60

Query: 61  DLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMWAS 120
           DLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMWAS
Sbjct: 61  DLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMWAS 120

Query: 121 EMNGEAGVGEERERKSRNESVSPNANTSKLLKGEAPLSRHGRGNRLSSAIVNPNASSSTS 180
           EMNGEAGVGEERERKSRNESVSPNANTSKLLKGEAPLSRHGRGNRLSSAIVNPNASSSTS
Sbjct: 121 EMNGEAGVGEERERKSRNESVSPNANTSKLLKGEAPLSRHGRGNRLSSAIVNPNASSSTS 180

Query: 181 SVLDAPFKGREIVAYDDLF 200
           SVLDAPFK REIVAYDDLF
Sbjct: 181 SVLDAPFKAREIVAYDDLF 199

[Close]

BLAST of Spo25742.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C4J9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g154720 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 2.600e-73
Identity = 157/203 (77.34%), Postives = 175/203 (86.21%), Query Frame = 1

		  
Query: 1   MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVEEPPKEKPAPPPAVVVIGLQDGCSVL 60
           MSRKR+KPYN SRHVPYSYPKRRRP+   PPP  EEPP++KPAPPPAVVVIGL + CSVL
Sbjct: 1   MSRKREKPYN-SRHVPYSYPKRRRPL---PPPAAEEPPQQKPAPPPAVVVIGLPEDCSVL 60

Query: 61  DLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMWAS 120
           DLKSR EIYGPISRIRI+QQGVGFISFRSKSAADSA++ASLDPSFGISI SHRVQVMWAS
Sbjct: 61  DLKSRFEIYGPISRIRIEQQGVGFISFRSKSAADSALTASLDPSFGISIHSHRVQVMWAS 120

Query: 121 EMNGEAGVGEERERKSRNESVS--PNANTSKLLKGEAPLSRHGRGNRLSSAIVNPNA--S 180
           EM GEA VG+E  R + N + +    + +SKLLKGE PLSR GRGN+LSSAIVNPNA  S
Sbjct: 121 EMKGEAAVGDEGRRNNSNSNSNSYSYSYSSKLLKGETPLSRLGRGNKLSSAIVNPNASTS 180

Query: 181 SSTSSVLDAPFKGREIVAYDDLF 200
           S+TSS+LD PFKGREIVAYDD+F
Sbjct: 181 SNTSSLLDPPFKGREIVAYDDIF 199

[Close]

BLAST of Spo25742.1 vs. UniProtKB/TrEMBL
Match: A0A061E795_THECC (Homeobox-leucine zipper protein ATHB-54 OS=Theobroma cacao GN=TCM_009958 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.400e-49
Identity = 120/202 (59.41%), Postives = 151/202 (74.75%), Query Frame = 1

		  
Query: 1   MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVEEPPKEKPAPPPAVVVIGLQDGCSVL 60
           MSRKRDKPY  SR  P S  KRRRP+PP P P  E+  ++KP PPPAVVV+GL   CSVL
Sbjct: 1   MSRKRDKPYF-SRLGPASISKRRRPLPPYPLPPPED--EDKPTPPPAVVVMGLPPNCSVL 60

Query: 61  DLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMWAS 120
           DLKSR EIYGPISRIRI++  VG+I++RSK +A+SAI+ASLD SFGI+IDS +VQV+WA+
Sbjct: 61  DLKSRFEIYGPISRIRINRDAVGYIAYRSKESAESAIAASLDSSFGITIDSTKVQVLWAT 120

Query: 121 EMNGE----AGVGEERERKSRNESVSPNANTSKLLKGEAPLSRHGRGNRLSSAIVNPNAS 180
           +   +     GVG  ++  S        +++SKLL+ E PLSRHGRGN+L+SAIVNP +S
Sbjct: 121 DPLAKWREGVGVGANKDNGS--------SSSSKLLRPEVPLSRHGRGNKLASAIVNPRSS 180

Query: 181 SSTSSVLDAPFKGREIVAYDDL 199
              SS+L+ PFKGR IVAYDD+
Sbjct: 181 DDGSSMLEVPFKGRGIVAYDDI 191

[Close]

BLAST of Spo25742.1 vs. UniProtKB/TrEMBL
Match: A0A0D2TZZ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G347100 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.200e-47
Identity = 115/199 (57.79%), Postives = 144/199 (72.36%), Query Frame = 1

		  
Query: 1   MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVEEPPKEKPAPPPAVVVIGLQDGCSVL 60
           MSRKR+KPY  SRH P S  KRRRP+PP PPP      + KP PPPAV+V+GL   CSVL
Sbjct: 31  MSRKREKPYF-SRHAPASISKRRRPLPPHPPPPPSSENEAKPKPPPAVIVMGLPPNCSVL 90

Query: 61  DLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMWAS 120
           DLKSR EIYG ISRIRI+   VG+I +R+K +A+SAI+ASLD SFGI++DS RVQV+WA+
Sbjct: 91  DLKSRFEIYGSISRIRINCDAVGYIVYRTKESAESAIAASLDSSFGITVDSKRVQVLWAT 150

Query: 121 EMNGEAGVGEERERKSRNESVSPNAN-TSKLLKGEAPLSRHGRGNRLSSAIVNPNASSST 180
           +      + + R+    N +    A  +SKLL+ E PLSRHGR N+L+SAIVNP  +   
Sbjct: 151 D-----PLAQWRDGIGVNANNDKGATCSSKLLRPEVPLSRHGRSNKLASAIVNPRTTDDG 210

Query: 181 SSVLDAPFKGREIVAYDDL 199
           SS+L+ PFKGREIVAYDD+
Sbjct: 211 SSMLELPFKGREIVAYDDI 223

[Close]

BLAST of Spo25742.1 vs. UniProtKB/TrEMBL
Match: A0A0B0NWR6_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_21956 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 9.300e-47
Identity = 115/199 (57.79%), Postives = 143/199 (71.86%), Query Frame = 1

		  
Query: 1   MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVEEPPKEKPAPPPAVVVIGLQDGCSVL 60
           MSRKRDKPY  S H P S  KRRRP+PP PPP      + KP PPPAV+V+GL   CSVL
Sbjct: 1   MSRKRDKPYL-SCHAPASISKRRRPLPPHPPPPPSSENEAKPKPPPAVIVMGLPPNCSVL 60

Query: 61  DLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMWAS 120
           DLKSR EIYG ISRIRI+   VG+I +RSK +A+SAI+ASLD SFGI++DS RVQV+WA+
Sbjct: 61  DLKSRFEIYGSISRIRINCDAVGYIVYRSKESAESAIAASLDSSFGITVDSKRVQVLWAT 120

Query: 121 EMNGEAGVGEERERKSRNESVSPNA-NTSKLLKGEAPLSRHGRGNRLSSAIVNPNASSST 180
           +      + + R+    N +    A ++SKLL+ E PLSRHGR N+L+S IVNP  +   
Sbjct: 121 D-----PLAQWRDGIGVNANNDKGATSSSKLLRPEVPLSRHGRSNKLASTIVNPRTTDDG 180

Query: 181 SSVLDAPFKGREIVAYDDL 199
           SS+L+ PFKGREIVAYDD+
Sbjct: 181 SSMLELPFKGREIVAYDDI 193

[Close]

BLAST of Spo25742.1 vs. ExPASy Swiss-Prot
Match: Y1705_ARATH (Uncharacterized protein At1g27050 OS=Arabidopsis thaliana GN=At1g27050 PE=2 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.400e-35
Identity = 101/213 (47.42%), Postives = 136/213 (63.85%), Query Frame = 1

		  
Query: 1   MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVE--EPPKEKPAPPPAVVVIGLQDGCS 60
           MSRKRDKPY N RH P    KRRRP  P      E  + P  KP PPPA+VV+GL   CS
Sbjct: 1   MSRKRDKPYTN-RHTPARISKRRRPWAPSSSEHDEIIDKPITKPPPPPALVVMGLPANCS 60

Query: 61  VLDLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMW 120
           VL+LKSR EIYG ISRIRI + G+G +S+R+  +A++AI+ S +PSFGISIDS +++V+W
Sbjct: 61  VLELKSRFEIYGSISRIRIHKDGIGSVSYRTAESAEAAIAGSHEPSFGISIDSKKLEVVW 120

Query: 121 ASE--MNGEAGV--GEERERKSRNESVSPNANTSKLLKGEAPLSRHGRGNRLSSAIVNPN 180
           A++  +  + GV  GE +ER S        + +SKLL+   PL +HGR +RL+SAIVNP 
Sbjct: 121 ATDPLVKWKEGVTAGEGKERTS--------SFSSKLLRPVMPLRKHGRSSRLASAIVNPR 180

Query: 181 ASSS---------TSSVLDAPFKGREIVAYDDL 199
           + ++         +S    +  K R IV YDD+
Sbjct: 181 SDNTKGISGDGGISSPATTSEVKQRNIVTYDDI 204

[Close]

BLAST of Spo25742.1 vs. TAIR (Arabidopsis)
Match: AT1G27050.1 (homeobox protein 54)

HSP 1 Score: 151.0 bits (380), Expect = 7.800e-37
Identity = 101/213 (47.42%), Postives = 136/213 (63.85%), Query Frame = 1

		  
Query: 1   MSRKRDKPYNNSRHVPYSYPKRRRPMPPPPPPLVE--EPPKEKPAPPPAVVVIGLQDGCS 60
           MSRKRDKPY N RH P    KRRRP  P      E  + P  KP PPPA+VV+GL   CS
Sbjct: 1   MSRKRDKPYTN-RHTPARISKRRRPWAPSSSEHDEIIDKPITKPPPPPALVVMGLPANCS 60

Query: 61  VLDLKSRLEIYGPISRIRIDQQGVGFISFRSKSAADSAISASLDPSFGISIDSHRVQVMW 120
           VL+LKSR EIYG ISRIRI + G+G +S+R+  +A++AI+ S +PSFGISIDS +++V+W
Sbjct: 61  VLELKSRFEIYGSISRIRIHKDGIGSVSYRTAESAEAAIAGSHEPSFGISIDSKKLEVVW 120

Query: 121 ASE--MNGEAGV--GEERERKSRNESVSPNANTSKLLKGEAPLSRHGRGNRLSSAIVNPN 180
           A++  +  + GV  GE +ER S        + +SKLL+   PL +HGR +RL+SAIVNP 
Sbjct: 121 ATDPLVKWKEGVTAGEGKERTS--------SFSSKLLRPVMPLRKHGRSSRLASAIVNPR 180

Query: 181 ASSS---------TSSVLDAPFKGREIVAYDDL 199
           + ++         +S    +  K R IV YDD+
Sbjct: 181 SDNTKGISGDGGISSPATTSEVKQRNIVTYDDI 204

The following BLAST results are available for this feature:

BLAST of Spo25742.1 vs. NCBI nr
BLAST of Spo25742.1 vs. UniProtKB/TrEMBL
BLAST of Spo25742.1 vs. ExPASy Swiss-Prot
BLAST of Spo25742.1 vs. TAIR (Arabidopsis)

BLAST of Spo25742.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902036361\|gb\|KNA02645.1\|	1.9e-101	99.5	hypothetical protein SOVF_2167...	[more]
gi\|731344179\|ref\|XP_010683273.1\|	3.7e-73	77.3	PREDICTED: uncharacterized pro...	[more]
gi\|590693569\|ref\|XP_007044370.1\|	4.9e-49	59.4	Homeobox-leucine zipper protei...	[more]
gi\|823216457\|ref\|XP_012440943.1\|	4.6e-47	57.7	PREDICTED: uncharacterized pro...	[more]
gi\|728837812\|gb\|KHG17255.1\|	1.3e-46	57.7	hypothetical protein F383_2195...	[more]

BLAST of Spo25742.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9Q6K7_SPIOL	1.3e-101	99.5	Uncharacterized protein OS=Spi...	[more]
A0A0J8C4J9_BETVU	2.6e-73	77.3	Uncharacterized protein OS=Bet...	[more]
A0A061E795_THECC	3.4e-49	59.4	Homeobox-leucine zipper protei...	[more]
A0A0D2TZZ4_GOSRA	3.2e-47	57.7	Uncharacterized protein OS=Gos...	[more]
A0A0B0NWR6_GOSAR	9.3e-47	57.7	Uncharacterized protein OS=Gos...	[more]

BLAST of Spo25742.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1

Position :

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Match Name	E-value	Identity	Description
Y1705_ARATH	1.4e-35	47.4	Uncharacterized protein At1g27...	[more]

BLAST of Spo25742.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

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Match Name	E-value	Identity	Description
AT1G27050.1	7.8e-37	47.4	homeobox protein 54	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 48..98 score: 3.
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 47..117 score: 9.
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 46..121 score: 10
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	3.30.70.330		coord: 22..124 score: 2.6
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 15..119 score: 1.63

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030003	cellular cation homeostasis
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0010103	stomatal complex morphogenesis
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0070838	divalent metal ion transport
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0031012	extracellular matrix
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0009505	plant-type cell wall
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005840	ribosome
cellular_component	GO:0048046	apoplast
molecular_function	GO:0030145	manganese ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0005515	protein binding
molecular_function	GO:0045735	nutrient reservoir activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo16134	0.73	Barchart \| Table
Spo18270	0.73	Barchart \| Table
Spo07806	0.68	Barchart \| Table
Spo09321	0.67	Barchart \| Table
Spo22784	0.66	Barchart \| Table
Spo25135	0.65	Barchart \| Table
Spo09210	0.65	Barchart \| Table