Spo25758 (gene) | SpinachBase

Overview


Name	Spo25758
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr1 : 39271295 .. 39275176 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTGAAGTCATTTGATGTATAAGAAGGTGACCTCCTTACTATTTTTTCCTTTTGATTGTTTAATGACGAGGCCAACTGCATTTCTTGCTATATCTATTATGGAGTACTATATCTATTACTATTGATTATAATCTCATTTGCAATTTACGATTTGGTGGTTAACGAAGAGTTAAATTGAAATTTGCAACTCTTGTTGTATATTTTACCGATGATGATAAACAGATTTACAATCTGCCAAAGAAAAGAAAAACAAGTCTGGAAAGATAGAAGTCACATACAAATTTCAGTTGATGATCCAATGAGATCTGACTGGAGTGGTATTTGCAGTTATGACCATGAGTCTCCTTTACCTGATTTATTTTATTTTTCTTAGGCTGTAGGTCTTATGTGCTCGTAGCAAGCTTGGAAGTAAATTACTCCTATTTCTTAGGCATAAAGCGTAGTATGTCTTGAAACCCTGGTAAATGCAGAAGCAAAGTTCGCCAAGATTGGAATACAAACTTCCCCTTTGGGTGGAAAATAAATTTATAATCCCCCATTTTTAGACTTGCATCAGTGTAAAATGATGTCTTTTTTAGAGGCAATATTGCTCCCAATATCTGCTTGTCTTGTTTACTTCATAAAACTAGAGTTCCGTTTTCCCAGTACTTTGATGATAATGGATAAACTAGTGTCCCCTTTTGATATTGTGGGTCATTGCCGTCATTATAACACGTTATGCAGCTAATCTTGTTAACTATAGGATATAGGACAATGGTATGTTTAGGCTGATGAGTCCATTATGTTATTGTGCTGCTGGTTTATTTTCTTTGTTTTATGTTTAGAAATTTGTTCTTTAGTGTTTAATCTAAGTACCTTTGCTTTGATTTATGGAATTCTCCCGTTTGATGTACTTGTTCAGTAGTTGTTCTGTGTAATGAATTAATGATATTTGAAATCACTAACTCAATCTATTGTCTGAAAACAACTGAATTTACATGGTATTTGAAAGACTTAAATATGTTGTATTTACATTTCAGGCTCGTGATTCATTCTTTTACTTTCGCTTGCCCTTTTACAGGGCCAAACAACAACTGTCCAATTTCAACCCTTAGCAAGACAAAATCCGTGGAAGTTCAATGTAAGCACCCTTACTTTTAAGTGTTATATTTATGTGTGATAAACCTTTCTCCATTCGCTCAAGATGGAAGTTCAGGAAGTTTCAGATTGTGTAGCCTTACCCTTTTCTTTTTTATTTGGTTAAAAGGTAAGCTTAGAGTAATTTAAATTGTCTTGTCCATGGACATACAACACATAAGATCATGAGGATCCTTTAGAGAGAGACAAAAGTACTTAGTTAATACAGACCAGGGAAGGGGAAGTCATAAAATTTACAAATAATTAACTAATTAGGGTCGGGGGTGTAAGAAACCTCAAAGGTTAGAGGTGACAATGTGGCCGCCCCAGTTATAGGCTGGCAAAATTAAGCTAGATGTTCGATAGGTAACATTTAGCCATCTAGAATTTGAGTTTACGAAAGGTTTTTCTCATCATCTCATGACTTGATAATTTAGCCTCACCGCTTATACAAATATGAGTATGTAGAAGTAGTTGGCTATATCTAGAATTCGGGTTTTTGAAAGGTTGTTCTCATTATCATATCAGACTTGACAATGTTGTCTCCTTCTTATAATGTGGTAATTTGTAGTATCAAAAAAATCCATAACTCTTATTCGACCCTTGATTATGTTGGTTTAATTAGTTACTCGATCCCTACTTTGGTGCAGAATTATTGTTTGAAGCATTGGATAAAATTGTTGTATTCATGTCTAGTATGTCATGGTTAGCTCTTCCTTTGGTGTGTCCTGTTTCGTAGAAGAAGGAAATTTTCTGTGAACTATAAGAAAGGCTGACTATGCTAGTGGATGGTTGAGTTTATGAGGCCGGAAACTGAGAAAATATCTATGTTAAATGATGCAGGATGGGAAAGGTTAAGCTGGATATAATGAAAGTAGAGAATGCAAGCAGCCGTCAAGCCACTTATTCAAAACGGAAACATTGGAATCTTGAAAAAGGCAAGAGCTATCTATATTGTGTGATATAGACCTAGCCCTTGTCATGTTCTCACCAGGTGGCAAACCTAGTTTATGTTGTGGAAAGCACAGGTATTACAGCTTCTGTCATTTTGATGTATGCATAACTTGATGCAGTTTCACAACCATTACTTACTTTAGGCTGTTGTTAATATTCACAGCTACATTTGTTCATTTCCTCTTGCTTAAATTATTCACCAGTTATGGCGATATCTTGAGTTTTATGTTGGCTTGAAGCCTTGAAGAACCCCTGCATGGAGGTTCTATTTTATCCAGAAAATTTTATTTACTGGGATTACATAATCTTTCAGCACCGTATAAACGTGAAATGTGCAGTTTGATCCTGTGGCAGTCCTGTAGAAACTAAAATTTCTTCAGAACAAAGTCTGTGTTTAGGATTTCGTCAGAATGCATATTTTTTATCCTTCAAAGACCAGATGAGATTCGTATCTGTAATATTTTTTTTTTCCGCCAAAATGTCTGCGCCTCTAGCTGCCCTTCCCTCGAAGGCGTCTTTAATACCTGGTTCTTGTTGAAGATAGTCCCTGCCTCAAGATATTAGATTAGATACTCTGGTGTGAATCTCATCCTGATTTTGAATGAGGTCCATGGCACAATTGCAATCTGTAGTAATAACCCCTCCCTCTAGTTTCAGTCCACTGCCCATTTAATGCCCTCAAAAATTGCAGTAACCTCTGCTTCCAATGCACTGGAGCAGTAGAAACTGAAGGTAATCCAAACACCGTGACTATTCCTACAAACACCAGAAATTCCCGATGCTTTTGACTGATTGATGAATGAGGAACCTTGATCTATTTATTCTCCAAAATCACAAGATTCAATGACCTCTGGCTTTGTTGTTTATAGAATATTTTATTGGTGTACCCCAGACATCAGAATAATAATACCGAGTTCCTGAAATTTGCTGTTAACAAACCCTCCAATTAAAGTGTGTTGTACCACATTGACAATAAACAACCAGGTTACTGTAACTACATGATATAAAAGGCAAGAATTGAGGCTAAACAAATCATACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACGTGGGCCAATGGCCCACAACGATATTAAATTTATTTTTTAAGGGGGAAGTCCCATCACAGTAGCTTGCTGCTGGGGTCTTCAAGCGTCGCCTATGCGTTGCACTACTGCACAGGCCTGGCGCACCCCACTAATTCCTAGTTTAAAAGTAAGGGCTATGGATAAAATTATAAATTGGTCTCACTTGTTTGTAAAGATAAAACTATAAATTGGATCTTTGTGTACTGCAGGTTCTAAAAAAATGGAATTTCTCTGCCAAATAAAGCTGATGTTTTCTTTTGCTGGTGTCTTCGGATCATAGGCTTGGCACCCCACTAATTCCTAGTTTAAAATTAAGAATTATGCCTTTTGTTCATTTTAAATTCCGCATAAAGATAAAATTATTACAATTGGCACCACAAAACTATTTGGTATCTTAGCTCCTCAGCTGTATCTGGGTAATGATTAATAGTAATTTCTCCCAAATTCTGCCTGTCATGTTTACTTCCACTGATGTTTTCTTTTGCTAGTCTCATCGGATCATTATTTGTTGTTTGTGTAATGGTGATTTGTTTATGTACACATTATTTTCCTTGCTTGGGTTGGTTCTTGTTTCATGCTTTGAAAACCATTATAACATTGTTTGTGATTTTGGTTCACCATGAACAGGACTTGTAATGGAATCTGCCACAGTTATTCTGATTTCTTTGTCTGTAAACAGGCCAAATGGTGA

mRNA sequence

GCTGAAGTCATTTGATGTATAAGAAGGGCCAAACAACAACTGTCCAATTTCAACCCTTAGCAAGACAAAATCCGTGGAAGTTCAATGATGGGAAAGACCTAGCCCTTGTCATGTTCTCACCAGGTGGCAAACCTAGTTTATGTTGTGGAAAGCACAGGACTTGTAATGGAATCTGCCACAGTTATTCTGATTTCTTTGTCTGTAAACAGGCCAAATGGTGA

Coding sequence (CDS)

ATGTATAAGAAGGGCCAAACAACAACTGTCCAATTTCAACCCTTAGCAAGACAAAATCCGTGGAAGTTCAATGATGGGAAAGACCTAGCCCTTGTCATGTTCTCACCAGGTGGCAAACCTAGTTTATGTTGTGGAAAGCACAGGACTTGTAATGGAATCTGCCACAGTTATTCTGATTTCTTTGTCTGTAAACAGGCCAAATGGTGA

Protein sequence

MYKKGQTTTVQFQPLARQNPWKFNDGKDLALVMFSPGGKPSLCCGKHRTCNGICHSYSDFFVCKQAKW

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo25758.1	Spo25758.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo25758.1 vs. NCBI nr
BLAST of Spo25758.1 vs. UniProtKB/TrEMBL
BLAST of Spo25758.1 vs. ExPASy Swiss-Prot
BLAST of Spo25758.1 vs. TAIR (Arabidopsis)

BLAST of Spo25758.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo25758.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo25758.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo25758.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0006164	purine nucleotide biosynthetic process
biological_process	GO:0006464	cellular protein modification process
biological_process	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation
biological_process	GO:0007017	microtubule-based process
biological_process	GO:0009086	methionine biosynthetic process
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0006979	response to oxidative stress
biological_process	GO:0008152	metabolic process
biological_process	GO:0044262	cellular carbohydrate metabolic process
biological_process	GO:0000105	histidine biosynthetic process
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0030091	protein repair
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006560	proline metabolic process
biological_process	GO:0050896	response to stimulus
biological_process	GO:0006591	ornithine metabolic process
biological_process	GO:0009987	cellular process
biological_process	GO:0006526	arginine biosynthetic process
biological_process	GO:0016311	dephosphorylation
biological_process	GO:0006771	riboflavin metabolic process
biological_process	GO:0048481	plant ovule development
biological_process	GO:0019497	hexachlorocyclohexane metabolic process
cellular_component	GO:0005875	microtubule associated complex
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0044425	membrane part
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009348	ornithine carbamoyltransferase complex
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0008113	peptide-methionine (S)-S-oxide reductase activity
molecular_function	GO:0004424	imidazoleglycerol-phosphate dehydratase activity
molecular_function	GO:0030170	pyridoxal phosphate binding
molecular_function	GO:0016829	lyase activity
molecular_function	GO:0004585	ornithine carbamoyltransferase activity
molecular_function	GO:0016597	amino acid binding
molecular_function	GO:0016746	transferase activity, transferring acyl groups
molecular_function	GO:0005515	protein binding
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0031072	heat shock protein binding
molecular_function	GO:0003993	acid phosphatase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo16213	0.74	Barchart \| Table
Spo04383	0.73	Barchart \| Table
Spo21155	0.72	Barchart \| Table
Spo11524	0.71	Barchart \| Table
Spo02932	0.70	Barchart \| Table
Spo04653	0.70	Barchart \| Table
Spo22811	0.69	Barchart \| Table
Spo28058	0.68	Barchart \| Table
Spo09769	0.68	Barchart \| Table
Spo10235	0.68	Barchart \| Table
Spo12302	0.68	Barchart \| Table
Spo14678	0.68	Barchart \| Table
Spo18195	0.68	Barchart \| Table
Spo27081	0.68	Barchart \| Table
Spo10864	0.67	Barchart \| Table
Spo21446	0.67	Barchart \| Table
Spo05125	0.67	Barchart \| Table
Spo24046	0.66	Barchart \| Table
Spo08645	0.66	Barchart \| Table
Spo16805	0.65	Barchart \| Table
Spo06004	0.65	Barchart \| Table
Spo16996	0.65	Barchart \| Table