Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCACAAAAATTAGTGGTGACGTGGCAGATAGCCAAAGCCTTTCCACCACTAATAAGAATCCAAAACAACACAACTAACCCCACCTTATCCAAAAAATAAAGAGCCAAAAATAATTAATCACAAAATCACATACCCTAAAAAAAATAAAGTTAAACAAACAAAAAACACACTTTGTGCATTTTTTGCAGAATGGAGAGTAGAAATGAGCACCTTAACAACAACAACCACCACCACCATCAATACAACCACAACCAAAGTCTCGACACCCGTACCGCCTTTTCGTGCCGCCCTCGGCCACTACCGATGTCGGAAAAGTTTTCTCTCGACCAATCGTATCCATATCAATCGTCGCGCTATTCCTCTACCACGTGGTAAGTTGGTAGCAACACGTACAGTTTGACATTGCTAGCTAGTTTATTGGGATTTCTTTAAGAGTTATAACAATCAAATTAAGGAATAATTCAATGAAACGTTGTATGTGTTAGATAACCCATTTTTCGGTTGTTAGCTACTAAATGATTGAATCAAATTATTTAAGATAACTCAAATAATTCAAAATGACTCTTCAAATGAACGTGTTTACTACGTAGTATCAATTTCCAGATTTTGATTTTGAAAGCTAATTCATATAATTTAAGTTGAATTATGAACTTCAAAAATAGTTGTACCTATATATATCAACACGTACAGTTTGACACTACTAGCTTGTTTAGATGGTAAAAATTTATTGGGATTTCTTTAAAAGTTAGGTTATGATATCCTCTTCACCTTATTCTTGTTGCTTATTGGATCAGATAAAAGCAGACTAGAAAAACAATAAAACACCCACATAAAACATTCAGAAGAAACTAGAAAAATCAGACCATGTCAGGTGAAAAGAACAGAGACTTAATTTAATTTGGCAGTTATAAATGATCAAAGTAAACATATCAATAATAATATATGTAAATGATCATGTTTGTTTTGTTTTTTTTTAATTTGGCAGTTATAAATGATCAAAGTAAGACAGAGTTAGGTTATGTTCTTTTTACCTTATTCTTGTTGCTTATTAGATCAGATCATAACATGCTAGAAAAAAAAACAATAAAACACCCACATAAAACATTCAGATCATATCAGATTAGAAACTAGAAAAATCACACCACGTCAGGTGAAAAGAACAGAGACTTAATTTAACTTGGAAGTTATAAATTATCAAAGTCAATGATCAAAGTAAACATATGAATAATAATATAATGTAAATGATCATGTTTTTTTTAATTTAATTTGGCAGTTATAAATGATCAAAGTAAGACAGAGGTTGAAAAGGCAGAGGCAGATAAAATAGTGGATGGGATGGAATTTGAGGAGCTATGCAATGAGTTTGAGTGCAAAAGTAGTCCATCTGTTGAATCCACTGCTAGACAACTTGTACGTGATATCTTAGAGCTTAGGGAAGGTAACCGTGCACTTGGTACTTTTGCCGTTTCTGTCAAATACAAGGTACAAATTATTTACTTTTACTTAGTTTCGGAATTGATTTTGGTACACTCATTGTGAAAGCATAGTTTTGTGTAAGACGCGTCTTATTTTTCTAATTAACATGAAGGAAGTATGTAATGTTTGGTTTATTGAAGATCTTACAAGATCTACAAAAAATCAAAATATGATTTGATCTACTTCGTATTATCTTGTTGATCGATTCTCTATGTGTTATAAGAATCAAATTAGAGAATAATTCAACTTAATTGAACTTATAGCTTAGTCCTGTAACTTAATTGAGAAGAACGCATCCTGAACCTATGGGTTCATTTTATGACATGTTTGGTGAGAGCTACTTAAATCGAGATTTGAGATTCCTTTACCTTTTACTCAGTTTCGGAATTGACTTTGGTACACTCGTTGTGAAAGCACAGTTTTCTGCAGCACGCATCTTTTTTCCTAATTAACATGAAGAGGAAGTACGTAATGTTTGGTTTATTGAAGATTTTACAAAATCCACGAAAAAATCAAAATATAATTTGATCTATTACCTTGTTGATCGATTCTTTATGTGTTATAAGATTCAAATTAGAGAATAATTCAACTTAGTTGAACTTATTAGTCATTGAACTTAATTGAGAAGAACGCATCTTGAACCTGTCAATTCAGTTTGTGACATATTTGGTGAGATCTACTTAAATCAAGATTTGAGATTCTTTTGCCATTAGCGGCTCTCTAATTTTCTATGCATAAAAAAACCCTCCACCCAACTTGCGTATATGCACACCCTTATCTGTGCACAAGGGTATCACCAAATAGTTTTTAGGCACAAGCTAAATGAATAAGATCGATGTCAGTTAGCTTAGCTGGTAAAGTTTTAGGTGGAGTGTATACATAATCAAGATCCGACACCCATTTATCAGTTTAAGAATCGTAAATCCGAAACACTAATTAGGCAAGCTAATCATCAAGTGATAATGCACTAATGTTACAATTAAATGTACTCTTGGTGCAAATTGCAGGATCCAATTAGAAGCTTCACAGGACGAGAAAAGTACAAAAGACCACTTTGGATAACTGATGCACTTGATAATCCTAGAGTGGTACGTAAAATAATTTTGTGTTCACGTAAATGACGTTGTATGGATGATTATTAATGATATTGTTTTTTCCCCGTAAAAAAAATTGTTGTTTGATTGATCATATAATATAGACAGTGCAAGAGATGACGATGTTGTCAACAAGTGTGCTTATCATCAAATGGACACTTAAAGGGAAGCCAAAGTCAATATTAGCTACCATAAGTGGAGATTTGATTGTTAAGGTGAATTCTAAGTTCACCTTAAACCAGATTAGTGGCCAAGTAATCGAGCACGAGGAGTCGTGGGATCTATCTGCATCATCACCGGTAGCTCAAGCATACTTCGGGGCGTCACGCCGCCTCTTCGCAGCGAAAGAAACCGGCAAAGATGTGGTGGATTCTGTGAAGAAACTTGGTGGCAAGATTTCTACCCCAAAGGAAAACATTGAGATATATCCTGACCCTTCCGGCGATCCAATGAAGGTAAAAAATCTTGTTCTTTTTGGTTGAATTTCAGTTTTTTTTTCAGTTCAGTTTAGCAAACTTCGGCTCAAAAGAACAAGGTCTTACTGAAATTGAATCCAAACTAATCATCACCGGTGAAAAACCATTTTTTTGTGGGTCAATATTAATTTCAATCGATTAGTATAAGTTGAACAGAACACGACTTTAGAGGTTTTACTTGTTATTTCTTTACTGTTATCAAGAATTAGACATTATCGGTCATAAAGTGACAACCAAAGGTAACGAAATGCACTAATTCTTAAATAGACCTGGTTCACACAAATTTATTGTGGATCATGTCTAAAAAAAAGTTAGTTAACAACCGCATTCTAATTTATTTTGACGTGTTTATTAAAATTATTATGAAAAAAGTATCAAATTGGTATCATTAGTACATGTTGTGCTTGAATAATGTGATTTTAAGTCACGATTCTCTTTTAATATAATTCAACTAATGGTACAACAATGTTACACGATTTTCTCTAGGTTTGTCGAAACTAGATTAGAAACTTGACGTGTTTATTAGAATTATTATGAAAAAAGTATCAAATTGTTATCATTAGTGCATGTTGTCCTTGAATAATGTGATTTTAAGTCACGATTCCCTTTCAATATAATGCAACTAATGGTACAACAATGTTACACGATTTTCTCTAGGTTTGTCGAAACTAAATTAGAAACTTGACGTGTTTATTAGAATTATTATGAAAAAAGTATCAAACTGGTATCATTAGTTCATGTTGTGCTTGAATAATGTGATATATAAGTCACAATTCTCTTTTAATATAACGCAACTAATGGTACAACAATGTTACACGATTTTCTCTAGGTTTTTCGAAACTAGATTAGAAACTTAACGCGTTTATTTGTTCGTGTTACAGTTCTTTCAAAGAGACGACTCCGAACAAAGGGACTTGTACCAGATTGCGTTATTCCTCGCACTTGTTTACTTCGTTGTACAATACTTGAGAACGACTTTGTAAAACATCGAATGCTCAAAACTGATCTTATGTATGTATTTTCTTTTTTCTTTCCTCCTAGTAAAGAAAATGTAGTATATTTAAAATAAATATCACAAATTCTTATTCACGAGTGTCGTACAATAAATATTATACACCGGAATAAAAGTTTCTCAAAATGCTTAAAAGTTAGCTTTATATACGTAAAAT CCACAAAAATTAGTGGTGACGTGGCAGATAGCCAAAGCCTTTCCACCACTAATAAGAATCCAAAACAACACAACTAACCCCACCTTATCCAAAAAATAAAGAGCCAAAAATAATTAATCACAAAATCACATACCCTAAAAAAAATAAAGTTAAACAAACAAAAAACACACTTTGTGCATTTTTTGCAGAATGGAGAGTAGAAATGAGCACCTTAACAACAACAACCACCACCACCATCAATACAACCACAACCAAAGTCTCGACACCCGTACCGCCTTTTCGTGCCGCCCTCGGCCACTACCGATGTCGGAAAAGTTTTCTCTCGACCAATCGTATCCATATCAATCGTCGCGCTATTCCTCTACCACGTGTTATAAATGATCAAAGTAAGACAGAGGTTGAAAAGGCAGAGGCAGATAAAATAGTGGATGGGATGGAATTTGAGGAGCTATGCAATGAGTTTGAGTGCAAAAGTAGTCCATCTGTTGAATCCACTGCTAGACAACTTGTACGTGATATCTTAGAGCTTAGGGAAGGTAACCGTGCACTTGGTACTTTTGCCGTTTCTGTCAAATACAAGGATCCAATTAGAAGCTTCACAGGACGAGAAAAGTACAAAAGACCACTTTGGATAACTGATGCACTTGATAATCCTAGAGTGACAGTGCAAGAGATGACGATGTTGTCAACAAGTGTGCTTATCATCAAATGGACACTTAAAGGGAAGCCAAAGTCAATATTAGCTACCATAAGTGGAGATTTGATTGTTAAGGTGAATTCTAAGTTCACCTTAAACCAGATTAGTGGCCAAGTAATCGAGCACGAGGAGTCGTGGGATCTATCTGCATCATCACCGGTAGCTCAAGCATACTTCGGGGCGTCACGCCGCCTCTTCGCAGCGAAAGAAACCGGCAAAGATGTGGTGGATTCTGTGAAGAAACTTGGTGGCAAGATTTCTACCCCAAAGGAAAACATTGAGATATATCCTGACCCTTCCGGCGATCCAATGAAGTTCTTTCAAAGAGACGACTCCGAACAAAGGGACTTGTACCAGATTGCGTTATTCCTCGCACTTGTTTACTTCGTTGTACAATACTTGAGAACGACTTTGTAAAACATCGAATGCTCAAAACTGATCTTATGTATGTATTTTCTTTTTTCTTTCCTCCTAGTAAAGAAAATGTAGTATATTTAAAATAAATATCACAAATTCTTATTCACGAGTGTCGTACAATAAATATTATACACCGGAATAAAAGTTTCTCAAAATGCTTAAAAGTTAGCTTTATATACGTAAAAT ATGAGCACCTTAACAACAACAACCACCACCACCATCAATACAACCACAACCAAAGTCTCGACACCCGTACCGCCTTTTCGTGCCGCCCTCGGCCACTACCGATGTCGGAAAAGTTTTCTCTCGACCAATCGTATCCATATCAATCGTCGCGCTATTCCTCTACCACGTGTTATAAATGATCAAAGTAAGACAGAGGTTGAAAAGGCAGAGGCAGATAAAATAGTGGATGGGATGGAATTTGAGGAGCTATGCAATGAGTTTGAGTGCAAAAGTAGTCCATCTGTTGAATCCACTGCTAGACAACTTGTACGTGATATCTTAGAGCTTAGGGAAGGTAACCGTGCACTTGGTACTTTTGCCGTTTCTGTCAAATACAAGGATCCAATTAGAAGCTTCACAGGACGAGAAAAGTACAAAAGACCACTTTGGATAACTGATGCACTTGATAATCCTAGAGTGACAGTGCAAGAGATGACGATGTTGTCAACAAGTGTGCTTATCATCAAATGGACACTTAAAGGGAAGCCAAAGTCAATATTAGCTACCATAAGTGGAGATTTGATTGTTAAGGTGAATTCTAAGTTCACCTTAAACCAGATTAGTGGCCAAGTAATCGAGCACGAGGAGTCGTGGGATCTATCTGCATCATCACCGGTAGCTCAAGCATACTTCGGGGCGTCACGCCGCCTCTTCGCAGCGAAAGAAACCGGCAAAGATGTGGTGGATTCTGTGAAGAAACTTGGTGGCAAGATTTCTACCCCAAAGGAAAACATTGAGATATATCCTGACCCTTCCGGCGATCCAATGAAGTTCTTTCAAAGAGACGACTCCGAACAAAGGGACTTGTACCAGATTGCGTTATTCCTCGCACTTGTTTACTTCGTTGTACAATACTTGAGAACGACTTTGTAA MSTLTTTTTTTINTTTTKVSTPVPPFRAALGHYRCRKSFLSTNRIHINRRAIPLPRVINDQSKTEVEKAEADKIVDGMEFEELCNEFECKSSPSVESTARQLVRDILELREGNRALGTFAVSVKYKDPIRSFTGREKYKRPLWITDALDNPRVTVQEMTMLSTSVLIIKWTLKGKPKSILATISGDLIVKVNSKFTLNQISGQVIEHEESWDLSASSPVAQAYFGASRRLFAAKETGKDVVDSVKKLGGKISTPKENIEIYPDPSGDPMKFFQRDDSEQRDLYQIALFLALVYFVVQYLRTTL Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo25800.1 vs. NCBI nr
Match: gi|902179998|gb|KNA09452.1| (hypothetical protein SOVF_153540 [Spinacia oleracea]) HSP 1 Score: 581.3 bits (1497), Expect = 1.000e-162 Identity = 302/303 (99.67%), Postives = 303/303 (100.00%), Query Frame = 1
BLAST of Spo25800.1 vs. NCBI nr
Match: gi|731326208|ref|XP_010673903.1| (PREDICTED: uncharacterized protein LOC104890207 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 429.9 bits (1104), Expect = 3.800e-117 Identity = 227/309 (73.46%), Postives = 253/309 (81.88%), Query Frame = 1
BLAST of Spo25800.1 vs. NCBI nr
Match: gi|297735250|emb|CBI17612.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 393.7 bits (1010), Expect = 3.000e-106 Identity = 205/272 (75.37%), Postives = 228/272 (83.82%), Query Frame = 1
BLAST of Spo25800.1 vs. NCBI nr
Match: gi|225430926|ref|XP_002277168.1| (PREDICTED: uncharacterized protein LOC100263239 [Vitis vinifera]) HSP 1 Score: 393.7 bits (1010), Expect = 3.000e-106 Identity = 205/272 (75.37%), Postives = 228/272 (83.82%), Query Frame = 1
BLAST of Spo25800.1 vs. NCBI nr
Match: gi|147819671|emb|CAN76393.1| (hypothetical protein VITISV_020863 [Vitis vinifera]) HSP 1 Score: 387.9 bits (995), Expect = 1.600e-104 Identity = 195/239 (81.59%), Postives = 214/239 (89.54%), Query Frame = 1
BLAST of Spo25800.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QQB6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_153540 PE=4 SV=1) HSP 1 Score: 581.3 bits (1497), Expect = 7.100e-163 Identity = 302/303 (99.67%), Postives = 303/303 (100.00%), Query Frame = 1
BLAST of Spo25800.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CRY3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g074990 PE=4 SV=1) HSP 1 Score: 429.9 bits (1104), Expect = 2.600e-117 Identity = 227/309 (73.46%), Postives = 253/309 (81.88%), Query Frame = 1
BLAST of Spo25800.1 vs. UniProtKB/TrEMBL
Match: F6GX17_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g00720 PE=4 SV=1) HSP 1 Score: 393.7 bits (1010), Expect = 2.100e-106 Identity = 205/272 (75.37%), Postives = 228/272 (83.82%), Query Frame = 1
BLAST of Spo25800.1 vs. UniProtKB/TrEMBL
Match: A5B3D0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020863 PE=4 SV=1) HSP 1 Score: 387.9 bits (995), Expect = 1.100e-104 Identity = 195/239 (81.59%), Postives = 214/239 (89.54%), Query Frame = 1
BLAST of Spo25800.1 vs. UniProtKB/TrEMBL
Match: B9RM63_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1077930 PE=4 SV=1) HSP 1 Score: 378.3 bits (970), Expect = 9.100e-102 Identity = 192/256 (75.00%), Postives = 217/256 (84.77%), Query Frame = 1
BLAST of Spo25800.1 vs. TAIR (Arabidopsis)
Match: AT1G65230.1 (Uncharacterized conserved protein (DUF2358)) HSP 1 Score: 363.2 bits (931), Expect = 1.500e-100 Identity = 193/292 (66.10%), Postives = 231/292 (79.11%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo25800.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo25800.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo25800.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo25800.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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