Spo25822 (gene)

Overview
NameSpo25822
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_00853 : 1592 .. 4933 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTTGGGTGCATTCTTTTCACCTTATTTGAAATAATTTTTTTGTATTGATCTGAACTTATTTAAACTACTGGACTTGGACCTGATTAAATCTAATAGGGCCTAATTGAAATTTATGGATTTGATCCAACCTGATTTCAAGAAAATAAATTTGAGATGGGACGAGTAAAAAATTTGGTATGGGTAACACAATAAATAAATGAGAAAGCATTGTAACTTAATATCGGATCTGAAATGGTTCAGGTTGAACAGATACATATGAGTTACATCAGGTTCAAGTTTATATCGATTAAGGTTTTTATTGGTTTAGATTCATACAATGTGGGTAAATCAATAGCGGGATGCAATGGGTGGAGGATTGTACTTCGGGTCAGGTGAATTGGGTTCCAAATTATAAAATCACAATTTTCAATAAGTTTATAAATTATAATATTGAGGCCTTACTTAGGGGACAAAGGAAATAACTAACTTTTAAAACTGTTAAGAATTTAAGATCAGTAGGGCGATTAAACGGGTTATGGGTTAATAATTTTATAAAGGATTCGAATTAAACAGGCTGTTTACGAGTTTTAAACGATTTGGATTTAGCGTGTTACGAGTTAAAATAATATGGGTTGTAAACGGGTCTTCCTCGGGTTCAAACGGTTCGATTGAAACATATTATGTCATTAACGAATTTTGGATCCATTCGGTTCGGGTTGAAACGAGTCGGTTGCTGCGGAACGGTTTGTTATCGGGTTTAGTATCTTTATCGGGTTTATATTTTCCGATCGGTTTGGGTTGAATATAATCGGATTGGGTTTTGGGTTCCAGCTCGTGGGTTATTAACTGTTCGGGTCATAAACGAGCAGACCAACCCATCGGGTTCAACGGTTCAGGTTGGGAATTGACATTTGTCATAGTATATGATGATAACTGATTTTTATACCTAACATCAAATTATGGGTGATGCATGAAAAAGAATAAAAAAATCTACGTATTTTTCTATTTTTTCTATGTTTTTTTTCAAAATTAATTTACCTTTGCACTTATAAAGTTAAAATATGTAAACCGTGCATCGCACAGGTACTATACTAGTTGTCTTCCTAATGCTCCTTCCGTCTAAGGCCGTCAAAAATTGACCAGGCATAAAAATAAGACTTAAACCGGCCAAATCTGTAATTGATCATGATCGAAATTTTGGTAAAGTTAATAATCCATAATACAACCCGTACATGATCCGAAAAAATTGAAAATACGATTTTAACCCGACACCCAACCGAGAGATGACCTATAACTGAACTGACCCGATCGGACAATGAACCAAACCCGATTCAATGCTCGACCCGACAATGAACTTAACTCGATTAATATTATTAATACCACTTGAGCTGAAGCGGTCTCTAGTTAGCCATTCAGATTAATCGGATTCGGATTTTTATTCCAGTAAGAAATAAAACTTTAAATCATAAGACTCAATTTCAATCATGATGAATTACAGATTCGGTTGTATTATGGATTAATTTCGATCATGATGAATTACAGATTTGGCCGGTTTAAGTCTTATTTTTATGCCGGGTCCATTTTGACGGCCTCAGAAGGAAGGACCGAAGGAGCATTAGGAAGACAATTGTACTCTAAGTGTGAATTACCGACCAGACGTAGGGCTATAATCGGCAGATCTGAAAAAACGTGTGAAATCTTCGTCAACTGGAAATATCTTATTTTAGACTTCCGACTTCTGTTCCTCTATTTTACAGAAAGTTTCGAATTTAACAGAATCCGTTAACAACCCCGGACCAAATTTCATCGTCTTCTTCATCATCCCTCAGCTCGCAGGTTTGTTAATTGCTCTCAATTGTTTCCTTTCTTATTATTGTTAATTGAAATATATGGAATTGTATTTTTTTTCTTTTCAATTTAACTATTTTTGTTTAAATTGTTGATTTCTAGGGTTATTTTTTAATGATATTTTGCTCGTTCATTGAATTACTGGTTAATTTTTCTCAAACTATGCTCGATTTAACTTTAAATTATAATGAATTTTGCGCAAATTCCCGATGATAGGTGAAATTTGAATTCCTACACACGGGTATTTTATGGTTTCATAGACTTAAAGATTCTGACGATTTTTGGCTGTAGGACTAATTAGGATTTGCTCCATCGGTATAAGGTCGAATTTTTACTCCATTCTGGGAATGGTTGGGGGATGGGGATTGTTAATTTAGCTAACGAGTATAAATGTGGAGGTTTTCTTTGGAAACTTTGTCGTGGTTGGCTCACCGCGTGTTTGGGGACCTGCTATTCGTGAGGAATCAAGTGTGGATTTTATTAGAGTATGCTAGTATACTAAAGGGAAATTTATGGAAATGTAAGGAGAAATCTGTGGAAATCTCCAAGTTTCATCTGGTATATACCCCGTTTGGAGTATTCCAAATAAGTTCCTTCAATTTATATGGAGGATTTGGAGACTTAATCTAGAATAAGAAGCAATTTTGATTATATTTGGGCATTTGTTTTCACTAGTTACTGTGTAAATAATTGGAAATTGTGTTTGTAAATAACTTGTTTTTCTATAGTTTTCGGCAATAAACAGGCAAACGATCTGGCTTCCTTCCCAACGTGTGTTCAGTTCTTTATCGTTTCTAGATCATCTGCTGAAATCACATCTTGGACTGGACATAATTTCAAAGTTTGATGTGCAGCTCTCATTTCAAAGTTTGGCCTCTAACCTGCTGTATATCCGTTCAGAAAGGCTTATTTTGGTATGGCATAAGAGACTTATTTTGCCTCCAGAGTTACTAAAGGTTCCGTCCTCTATGTTATGAAGTTTGTTTCTGCCTGCTTTGTTGGTTCATGATCCTTTTTTCTTGTCCTCTAATATTAATGTACTCCTAACCGTTCAACTTGATCCTAGCTGAAAACTGAAATTTGTGTCATTCAGCTGAACATGCAGTTTCATTAGCTGGCAGCCTGGCATGTATGCTGATTTTTTCTTCTTTTCTTTTCCGAATTTAAGATACAGAATAGATTAGTTATGCCTTTCCTCAAGGTTACTGATCTGTATTGATAAGAAGAGAAAATTGTTTGTCTGTAAAAGGGGTATCTGTTTGAAAGCTACAATTGTGCGATCAGTAGTTATCAATCTATCAGATAAACTAAGTGGTAAATATACCAGCTACTACTCGTAACTCGTAGAAAGCCCATGAGTCAAAGAAAAGATTTTGACTGTTGCATATGCTGTGAAACTTCTGATCTTTAATATCATTTCTCCTAAATTCTTTACATGTTGTTCAATTGTTTTAGATATTGTTTGAAGTTGTGGTGTTACTAAGTTTTGGAATTTGTGTATACCTGTAG

mRNA sequence

ATGGAGAAAGTTTCGAATTTAACAGAATCCGTTAACAACCCCGGACCAAATTTCATCGTCTTCTTCATCATCCCTCAGCTCGCAGTTTTCGGCAATAAACAGGCAAACGATCTGGCTTCCTTCCCAACGTGTGTTCAGTTCTTTATCGTTTCTAGATCATCTGCTGAAATCACATCTTGGACTGGACATAATTTCAAAATATTGTTTGAAGTTGTGGTGTTACTAAGTTTTGGAATTTGTGTATACCTGTAG

Coding sequence (CDS)

ATGGAGAAAGTTTCGAATTTAACAGAATCCGTTAACAACCCCGGACCAAATTTCATCGTCTTCTTCATCATCCCTCAGCTCGCAGTTTTCGGCAATAAACAGGCAAACGATCTGGCTTCCTTCCCAACGTGTGTTCAGTTCTTTATCGTTTCTAGATCATCTGCTGAAATCACATCTTGGACTGGACATAATTTCAAAATATTGTTTGAAGTTGTGGTGTTACTAAGTTTTGGAATTTGTGTATACCTGTAG

Protein sequence

MEKVSNLTESVNNPGPNFIVFFIIPQLAVFGNKQANDLASFPTCVQFFIVSRSSAEITSWTGHNFKILFEVVVLLSFGICVYL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo25822.1Spo25822.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo25822.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25822.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25822.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25822.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:0000023 maltose metabolic process
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0007165 signal transduction
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0009086 methionine biosynthetic process
biological_process GO:0006508 proteolysis
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0045859 regulation of protein kinase activity
biological_process GO:0016556 mRNA modification
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0015716 organic phosphonate transport
biological_process GO:0005980 glycogen catabolic process
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0016998 cell wall macromolecule catabolic process
biological_process GO:0007020 microtubule nucleation
biological_process GO:0015996 chlorophyll catabolic process
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0006364 rRNA processing
biological_process GO:0015743 malate transport
biological_process GO:0008380 RNA splicing
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0015748 organophosphate ester transport
biological_process GO:0008152 metabolic process
biological_process GO:0045036 protein targeting to chloroplast
biological_process GO:0016049 cell growth
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0006897 endocytosis
biological_process GO:0005982 starch metabolic process
biological_process GO:0009117 nucleotide metabolic process
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0009561 megagametogenesis
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0032482 Rab protein signal transduction
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0061025 membrane fusion
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009408 response to heat
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0005983 starch catabolic process
biological_process GO:0000902 cell morphogenesis
biological_process GO:0016226 iron-sulfur cluster assembly
cellular_component GO:0005956 protein kinase CK2 complex
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0031012 extracellular matrix
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005886 plasma membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0005829 cytosol
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0031461 cullin-RING ubiquitin ligase complex
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0016020 membrane
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0030532 small nuclear ribonucleoprotein complex
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005773 vacuole
cellular_component GO:0005739 mitochondrion
cellular_component GO:0032040 small-subunit processome
cellular_component GO:0005774 vacuolar membrane
molecular_function GO:0019887 protein kinase regulator activity
molecular_function GO:0016301 kinase activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0019003 GDP binding
molecular_function GO:0005515 protein binding
molecular_function GO:0009044 xylan 1,4-beta-xylosidase activity
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0005525 GTP binding
molecular_function GO:0031625 ubiquitin protein ligase binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0004683 calmodulin-dependent protein kinase activity
molecular_function GO:0010181 FMN binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0051060 pullulanase activity
molecular_function GO:0015416 ATPase-coupled organic phosphonate transmembrane transporter activity
molecular_function GO:0004697 protein kinase C activity
molecular_function GO:0004046 aminoacylase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0043169 cation binding
molecular_function GO:0004133 glycogen debranching enzyme activity
molecular_function GO:0010303 limit dextrinase activity
molecular_function GO:0003924 GTPase activity
RNA-Seq Expression