Spo25826 (gene)

Overview
NameSpo25826
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_00853 : 112760 .. 114078 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACCCATATGCCCAATCGATGAGAAACACATGCATAACCAACCGTATACGAATGTTCAGGATTGAAATCTCCAGTTGGTGGATGTAGCACCCATGAAAAAGCTTTGTTTCCGAAACATGAAAATAAATTTTCCATCACTTGATTACGTCCATTAGGCTGCATGAACGTTCAAAAATATATTAAGATGTAAAAACAACATGAGCTAATTAATTGAAAATTTTATGTTGTCAGAGTATTAGATTGAAACCTGTTGAAGTACTGATTTTATTTCAGTAGCTAAACATATCAATTTGGTTCTTAAGTTATTTATATTAAATATTGTTGTAATATTGATATTGCTGATATTTGATTTTTTCTATGAGAATGAAATTTAAACGCTAATTTTTCCAATTACCTGTTCCAATTTGTCTCCTTTCAATATCATTTTTTAAAATTCAGTAACAAACTCGTAAATTAAAAACCACGTATTGTACGAAGTATATTGGAGAGTGAAATGTAATTTATCACTAATTAATTTTCTTTTTTTAAAAAAGATAATTTTTAAGTTGTTATTTAGATTATAATCGAAATTTTCCTTTCCGCTAAAACAAAGTTTTCATTTAAAATATAAAATAAATATTTTATTTTGATGCTTTTTGTTTTTCTTTTCTGCTATTACAAAATTTTTAATTAAAAATAAAATAAATATTTTATTAGAATGACTTTTAATTTTCTTATCAAGTTAATAAGAGATACTAATTTTTGTTTAATAAAGTTTGGAAAATGCCTCCTATTTCGTACTGAAAGCCCAAATATCAAACCCTATTTCATTTTAACCCTATTTCATTTTGTTGCTTACTCTTATCCCCTATCTCCCCGCCGCTCTCTTTCTCTCTCTTTAAACGTTTTTCAGCTCCTTTCTCAACTCCTTTCTCTCCGCCGTTCTCTTATCTCTATCTTAAATCTATTTGAGTTTGTTTCTCCTCCTATCTTTCCTTTCTCTCTTTAACCTTTCATTTCGCTGATTTTCTTCTTTTTATCTCCTCAAAAAATGGTGATTCTACATACAAATTTCCACGTACTTTGAAGATCTTTACAAAAAATGGTGAATACAGGTTATTTAGGGTTTGGTTTTTGGAATAATGGTTGCTTAATTAATTTTAGTTGGGGTTCGTTTTCTTAAAAATTGCATAACTAATTTTTTTGCACTCTTAATTTGCATGTCGTTGGAGAGAAAGGTGCGGGGTTGCTGGGCGAGGCGGTCTGCTAGGCGAGGCGCTGTCCGAGGCTATAGATCGGTAACCCACAATCTGAGTTGCTTAATATTTGGAATGTAA

mRNA sequence

ATGCACCCATATGCCCAATCGATGAGAAACACATGCATAACCAACCTTTGTTTCTCCTCCTATCTTTCCTTTCTCTCTTTAACCTTTCATTTCGCTGATTTTCTTCTTTTTATCTCCTCAAAAAATGGTGATTCTACATACAAATTTCCACGTACTTTGAAGATCTTTACAAAAAATGGTGAATACAGAAAGGTGCGGGGTTGCTGGGCGAGGCGGTCTGCTAGGCGAGGCGCTGTCCGAGGCTATAGATCGGTAACCCACAATCTGAGTTGCTTAATATTTGGAATGTAA

Coding sequence (CDS)

ATGCACCCATATGCCCAATCGATGAGAAACACATGCATAACCAACCTTTGTTTCTCCTCCTATCTTTCCTTTCTCTCTTTAACCTTTCATTTCGCTGATTTTCTTCTTTTTATCTCCTCAAAAAATGGTGATTCTACATACAAATTTCCACGTACTTTGAAGATCTTTACAAAAAATGGTGAATACAGAAAGGTGCGGGGTTGCTGGGCGAGGCGGTCTGCTAGGCGAGGCGCTGTCCGAGGCTATAGATCGGTAACCCACAATCTGAGTTGCTTAATATTTGGAATGTAA

Protein sequence

MHPYAQSMRNTCITNLCFSSYLSFLSLTFHFADFLLFISSKNGDSTYKFPRTLKIFTKNGEYRKVRGCWARRSARRGAVRGYRSVTHNLSCLIFGM
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo25826.1Spo25826.1mRNA


Homology
[Close]
BLAST of Spo25826.1 vs. NCBI nr
Match: gi|902074337|gb|KNA03032.1| (hypothetical protein SOVF_213040 [Spinacia oleracea])

HSP 1 Score: 70.9 bits (172), Expect = 1.400e-9
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 1 

		  

Query: 65 VRGCWARRSARRGAVRGYRSVTHNLSCLIFGM 97
          VRGCWARRSARRGAVRGYRSVTHNLSCLIFGM
Sbjct: 2  VRGCWARRSARRGAVRGYRSVTHNLSCLIFGM 33
[Close]
BLAST of Spo25826.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q776_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_213040 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 9.800e-10
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 1 

		  

Query: 65 VRGCWARRSARRGAVRGYRSVTHNLSCLIFGM 97
          VRGCWARRSARRGAVRGYRSVTHNLSCLIFGM
Sbjct: 2  VRGCWARRSARRGAVRGYRSVTHNLSCLIFGM 33
The following BLAST results are available for this feature:
BLAST of Spo25826.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902074337|gb|KNA03032.1|1.4e-9100.hypothetical protein SOVF_2130... [more]
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BLAST of Spo25826.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9Q776_SPIOL9.8e-10100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo25826.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25826.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo038820.69Barchart | Table
Spo234400.66Barchart | Table