Spo25847 (gene)

Overview
NameSpo25847
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr1 : 13312980 .. 13315631 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAAATGGAAGAAACCCACATACCAAATGACTAGAAAGAATAACTTTGGCACCATTGTTGATCAAATGCTTGATGGTAGGAATAGCGGCACGAATTCGGGTATCATCAGTAATGTTCTGGCTGTCATCAAGAGGGACATTAAGGTCAGCTCTAACGAACACCTTCTTTCCCTTCAAATCAGCAGAGGTTAGATCGCCAACACTCTTCTTAGCCATGGAAGCAACCCCTCTAATGGGCTTGGTAGATTGAGATTTGTAGGAGTTGATCTTGGAGAGGACATGGAGGCTGAAACTGGCGTCTGCGGCGGCACCGGCGAATCCGAGACGGCGGAGAGGAGGGCGAAGGGTGGAGGCCAGGCGGACGAAGGAGGGAGAGCGAGTGGAGGAGGTGGAGGCTGAGGAGGAAGATTGGAGGAGAGAGAATGAAGAGGGTGCTGCTGCAGTTGACGCCATTGTAGGAGTGTGATTACAGAAAAGTGAGCAGTGAAATGTGTGTTTGTTTGGTGAAGTGTTTGATAATAATAATGTTGGGAGGATTTCCTTATCGTTGAGGTGAGGCTGAAGATGTTCGATGGTCTTGTTCCATGCTTTTGAATCCTTTATTTTAGCCACTAGATCTTTCTATTGAGGGATGGTACCTACAATTTTTATGTGACAACAAAATAAATGACATTGATTAACAAATGGAAATTATTTGCTTTTTGTGAGAGATAGGCCCCGAATGGTGTTTTGATTAGAGCTGGCAAATGTGTCGGGTCGCGTTCGTGTCCATATCGAATATAAATGGGTTGGAAAATTTCAATACTAAACCGACCCGTTTTATAAATGTGTCATGTCGTGTTGAACCGTTAACTAATTGTGTAGGAAGCTCTTGACACTAACCCACTTTTTTCGTGTTGTGTTTGTTCAATGACATTGTTTAAGGCGTGTCAGTTGCGTGTTGAGAGTATCAACACTAAACCGACCCATTAACCCATTTAAATCCTTGATACTAACCCGTTTTTTTTCGTGTCCAGTTAGTATCATGTTAACATGTCATGTCAGATTTTGCCAGCTCTCAAATGAAACATGAACTTATCTGAATTTATTGAAACTGATTAAACTTGGTTGACCTAATTTGACCTGATCAAACTTGTTTGAAACTTATTGGACATGATTTGACCTGATTGTAAAAGAGTAAACTTGAGAGAATCAACTTACAAAACCTGATTGAAACTTATATATCTTACTGAACTTTATATAACCTTATTGGAACTTATTGTCATGATAGGATCTAATTGCAACTTAACTGATATTACTAGTGTGTGGCCCGGGCGATGTCACGGTTGTTACATTGAATAATTAAAATTTTAGATTTTTCTTAAGCTCAATATTGACCAAAATACTTGTATTCTATAGAATGAAAAACATCCGTTAAGTTCGTCCACTACACATACACGCTACGTCATTTATCATATATCATCTTACAATTTGTATAANTAAGTTCGTCCACTACACATACACGCTACGTCATTTATCATATATCATCTTACAATTTGTATAAGTTGTTTTCTCATGGAACTAAGTGTGCTAAATTAATTAATAAACACCAAATTAGATATATATGCAGATATGTAGGGCAATCCTATAGTTAATTCTTATATATAAGACTTGTGACATCATGTTTCTTCATGGTTGTCATAATGCTTTAATTTTTTTCCCCAAGATAGTCCATAGAAATCAAAAAGTCACATAAAAATTTAGTTGTTTTAGAATTCATGTCAACATNTAAGTTCGTCCACTACACATACACGCTACGTCATTTATCATATATCATCTTACAATTTGTATAATTTGTTTTCTCATGGAACTAAGTGTGCTAAATTAATTAATAAACACCAAATTAGATATATATATGCAGATATGTAGGGCAATCCTATAGTTAATTCTTATATATAAGACTTGTGACATCATGTTTCTTCATGGTTGTCATAATGCTTTAATTTTTTTCCCCAAGATAGTCCATAGAAATCAAAAAGTCACATAAAAATTTAGTTGTTTTAGAATTCATGTCAACATTTATTCATAAATTAATGTGAAAAGATAAATCACAATTGGTGGTTGGTTAAGATGGTAATGTGAGTTATCATCCACACTTGAGGTCTAATGTACAAACCTCATTGTATTGATTTTTGGTTGTCCATTACATAACACTTGGTGAGTGGATGATGTGGCGTAATGAGGAGAGTATTACGTGACACATATACATTTTTCACAACGCCTTTTAATATATTAGTATAGANTGAGGAGAGTATTACGTGACACATATACATTTTTCACAACGCCTTTTAATATATTAGTATAGATAGATATAAAACACACACATAATAATGTAGACAATGGGGGCAATGAAAAAAAAATATTAAAAGATGCAATAATGATAGAACTATAGAAGCCTCTTAATACACAAAGAAATACGTAGTGCTACAATATGATTTTTCCCATGGGAATATATAATGATCAATATCATTGCAAGTACTTTAGCAACAAAGTTGCTACGGCACATAAACTAAGCAAAAAGAACAATTTATTTTAGTAACATGATATTTTTTTTGTTTAAATAGTGAATCTCATGTCAAGCATATTATCTTGACGGGAGCTTCACATTGA

mRNA sequence

ATGATCAAATGGAAGAAACCCACATACCAAATGACTAGAAAGAATAACTTTGGCACCATTGTTGATCAAATGCTTGATGGTAGGAATAGCGGCACGAATTCGGGTATCATCAGTAATGTTCTGGCTGTCATCAAGAGGGACATTAAGGAGTTGATCTTGGAGAGGACATGGAGGCTGAAACTGGCGTCTGCGGCGGCACCGGCGAATCCGAGACGGCGGAGAGGAGGGCGAAGGGTGGAGGCCAGGCGGACGAAGGAGGGAGAGCGAGTGGAGGAGGTGGAGGCTGAGGAGGAAGATTGGAGGAGAGAGAATGAAGAGGGTGCTGCTGCAGTTGACGCCATTGTAGGAGTTGAATCTCATGTCAAGCATATTATCTTGACGGGAGCTTCACATTGA

Coding sequence (CDS)

ATGATCAAATGGAAGAAACCCACATACCAAATGACTAGAAAGAATAACTTTGGCACCATTGTTGATCAAATGCTTGATGGTAGGAATAGCGGCACGAATTCGGGTATCATCAGTAATGTTCTGGCTGTCATCAAGAGGGACATTAAGGAGTTGATCTTGGAGAGGACATGGAGGCTGAAACTGGCGTCTGCGGCGGCACCGGCGAATCCGAGACGGCGGAGAGGAGGGCGAAGGGTGGAGGCCAGGCGGACGAAGGAGGGAGAGCGAGTGGAGGAGGTGGAGGCTGAGGAGGAAGATTGGAGGAGAGAGAATGAAGAGGGTGCTGCTGCAGTTGACGCCATTGTAGGAGTTGAATCTCATGTCAAGCATATTATCTTGACGGGAGCTTCACATTGA

Protein sequence

MIKWKKPTYQMTRKNNFGTIVDQMLDGRNSGTNSGIISNVLAVIKRDIKELILERTWRLKLASAAAPANPRRRRGGRRVEARRTKEGERVEEVEAEEEDWRRENEEGAAAVDAIVGVESHVKHIILTGASH
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo25847.1Spo25847.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo25847.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25847.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25847.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25847.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 83..110
scor

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
biological_process GO:0009637 response to blue light
biological_process GO:0048767 root hair elongation
biological_process GO:0009744 response to sucrose
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0010114 response to red light
biological_process GO:0009644 response to high light intensity
biological_process GO:0010218 response to far red light
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0046686 response to cadmium ion
biological_process GO:0010155 regulation of proton transport
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0043481 anthocyanin accumulation in tissues in response to UV light
biological_process GO:0009932 cell tip growth
biological_process GO:0071555 cell wall organization
biological_process GO:0055070 copper ion homeostasis
biological_process GO:0042744 hydrogen peroxide catabolic process
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0009825 multidimensional cell growth
biological_process GO:0017148 negative regulation of translation
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0009657 plastid organization
biological_process GO:0000271 polysaccharide biosynthetic process
biological_process GO:0010817 regulation of hormone levels
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0051788 response to misfolded protein
biological_process GO:0016558 protein import into peroxisome matrix
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0009853 photorespiration
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0009086 methionine biosynthetic process
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006979 response to oxidative stress
biological_process GO:0006635 fatty acid beta-oxidation
biological_process GO:0016573 histone acetylation
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005829 cytosol
cellular_component GO:0005777 peroxisome
cellular_component GO:0000123 histone acetyltransferase complex
cellular_component GO:0080008 Cul4-RING E3 ubiquitin ligase complex
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005778 peroxisomal membrane
cellular_component GO:0009505 plant-type cell wall
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009579 thylakoid
cellular_component GO:0005840 ribosome
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009507 chloroplast
molecular_function GO:0004601 peroxidase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0051536 iron-sulfur cluster binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0005507 copper ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0004402 histone acetyltransferase activity
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0051920 peroxiredoxin activity
RNA-Seq Expression