Spo25981 (gene)

Overview
NameSpo25981
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionRing finger protein, putative
Locationchr6 : 41261876 .. 41264138 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAAACAAACAAAACAAAATGTTGCAGTTCTGCTTTTCCGCTTGCATGATTCAGTAGATCGTGTTAAAGGTTCACTGTTGACTTCGTTCATAGACATTATGTGCACAAATTTCAGGTACCATTATATTCTTGTTTAAGTTAGCTTGAATGTATATGAACTGTTTGGGGCACCTGGCACCAACACTTAATTTAGGAATTTTTAACAGTAATTTGTGAGTGTGTTGAAATAATATATGGGACTGGTTCGTATGTAGTATGTGTTTATATTTTTATAACGGGTTTGAGGACATTAGTGTTAAGAGCATATGTGCATTCTTTGTGTGCTTGCTTGTAATAATTGATCTTTCCAAATTAATTCCAGAAGTTTTGTTTTTTACTTATACAAAATGACTTAGGCTTTCCATTTTGTGTCAAACATATTGATTCTTGAGTGTAAGTATCCAACACTTCCATCACTACACACTCTGTATAGAGTCAAGATTTAGAATCTGAAACCTTATTGAAAAAATTGTGTCCCTTGGAAATAAATCTATTACTTTATACTAAAACAGACACCAGGAATGACACATGTCACTTCCTGGTGCAATTTTTTCCCGCCAAAAGCCTATTTCCTAAAATATATCTATTTTATTTATTTATTTAGTTTTTATCAGTTTTTATAAATGGATTATGCATGGAAACAAAATATTGGCTTACTAAATATGACAATAATAAATACCACATAATAACTTGCTCAAAATTATATTGAAATATTTTTGTCAAATCGGTATATCAATAATAGAAAATATATTTAGTCGATATTTGATCAAATTAGCATATGATGCACATAAAATATGTAATACGTAATAGGACAAAAGTTTCCTATTAGATGATTAAATGAATATGTTCAAGATTTATTAATTATGCATTGGCTTTAGGAGGAGAAATATTTTTTTAAAACAAATATGGTCAAACAATAATTTTAAAATATCCGTGCATGCACGGGATATAATCTAGTCATTCTCTATTCAAATGTGGATTTCGTTTTAATAAAAGAATACAGGAGAATTGTTATGTGGTCAGATTTGCTTTTCAATCTTCTTGGTTGATTATTGTTACTATTTTTACGAATTGCTTGACTTTTGCTTAATTGCTTCAAGGCCCAAACTCGGTATATTTTGCTGTTGCGGTTGCTGCTAATTAATTGTATGCAGGCTACAGTTTTGTTTCTTGCAAAACCCGATTGTATTACTTGGAACACTAATTTGGATGAAAATCAGCTGTTTTGGAAGGTATTAGATTTGTTTTTTCATGTTAGATGACATAGACCTTTTGATACCTTGACAATATGGCATTGAATAATTATGTTGGAGAGTTGGAGTGTGAATTTTGATATTTTAATTTTGATACAGGTTTACTGTTGCATCAATTCTACTGGCACAACTTGGAATCTGTGTAGGAGATTATGGTGATAATTTTAATTGGGGCGGAATTTTACATGGACATGAATGGGTTATTGAAATTTCACTAATATTAGGTATGTTTTTAATAATTGTTCTTATATTTCTTATTCGGCGTTTTTTCAAGAAAACGCAACAAAGCACACCACCTACTATCCAACTCCCCAATCTTCCCCCCGCCCAAGCCTCTGAAAATTTTACCAACCCCTCTAATGAAACCTATGTATTACGTAGATTACCGGAAGATATTTATAGGCGTTTTCCGGTAGATACATATTCAACTAAACGTTGTAATGACTTCAGTCATGAAGATTGTATGATATGTAATTTTCCTTTTGTTGATGGAGAGGAGCTTTGTATACTTCCTGTTTGCCGCCATGTATTTCACTCTCACTGTACTAGTTCATGGTTTTTAAGCCATGATTGTCGTTGTACAGTGTGCCGTCATGATTATTTTGACGGTTTTAATAATGATCAATTAGTAGTGTAAAAAACTATGTATGCTACATTATACATTTGTGTTCATACATTGGTTTCATTCATTGTGTGGTACTGGGTAAGAACTGGTAATAAGTTTCGAGAATTACTGGTAAATCTGGAAATAAACTTGTATTATCGAGTATTACTGTTGGTTGTTTTTATTTCCTCAATTCTGGAAATGTAATTTACATTGTAGTACCACCGAAAAAGATTGTTCTCCCTAAATTCTCATAATGTTCTCTATCATAGACTCCATAATGCCAGTTATCGGCATACTTTACAGTTTGTTTAGGGCTAATCTGTTGATGATTTGCATCTAAAACCCCAAATCCAGAACAAA

mRNA sequence

ATGAAAAAACAAACAAAACAAAATGTTGCAGTTCTGCTTTTCCGCTTGCATGATTCAGTAGATCGTGTTAAAGGTTCACTGTTGACTTCGTTCATAGACATTATGTGCACAAATTTCAGGCTACAGTTTTGTTTCTTGCAAAACCCGATTGTATTACTTGGAACACTAATTTGGATGAAAATCAGCTGTTTTGGAAGGTTTACTGTTGCATCAATTCTACTGGCACAACTTGGAATCTGTGTAGGAGATTATGGTGATAATTTTAATTGGGGCGGAATTTTACATGGACATGAATGGGTTATTGAAATTTCACTAATATTAGGTATGTTTTTAATAATTGTTCTTATATTTCTTATTCGGCGTTTTTTCAAGAAAACGCAACAAAGCACACCACCTACTATCCAACTCCCCAATCTTCCCCCCGCCCAAGCCTCTGAAAATTTTACCAACCCCTCTAATGAAACCTATGTATTACGTAGATTACCGGAAGATATTTATAGGCGTTTTCCGGTAGATACATATTCAACTAAACGTTGTAATGACTTCAGTCATGAAGATTGTATGATATGTAATTTTCCTTTTGTTGATGGAGAGGAGCTTTGTATACTTCCTGTTTGCCGCCATGTATTTCACTCTCACTGTACTAGTTCATGGTTTTTAAGCCATGATTGTCGTTGTACAGTGTGCCGTCATGATTATTTTGACGGTTTTAATAATGATCAATTAGTAGTGTAAAAAACTATGTATGCTACATTATACATTTGTGTTCATACATTGGTTTCATTCATTGTGTGGTACTGGGTAAGAACTGGTAATAAGTTTCGAGAATTACTGGTAAATCTGGAAATAAACTTGTATTATCGAGTATTACTGTTGGTTGTTTTTATTTCCTCAATTCTGGAAATGTAATTTACATTGTAGTACCACCGAAAAAGATTGTTCTCCCTAAATTCTCATAATGTTCTCTATCATAGACTCCATAATGCCAGTTATCGGCATACTTTACAGTTTGTTTAGGGCTAATCTGTTGATGATTTGCATCTAAAACCCCAAATCCAGAACAAA

Coding sequence (CDS)

ATGAAAAAACAAACAAAACAAAATGTTGCAGTTCTGCTTTTCCGCTTGCATGATTCAGTAGATCGTGTTAAAGGTTCACTGTTGACTTCGTTCATAGACATTATGTGCACAAATTTCAGGCTACAGTTTTGTTTCTTGCAAAACCCGATTGTATTACTTGGAACACTAATTTGGATGAAAATCAGCTGTTTTGGAAGGTTTACTGTTGCATCAATTCTACTGGCACAACTTGGAATCTGTGTAGGAGATTATGGTGATAATTTTAATTGGGGCGGAATTTTACATGGACATGAATGGGTTATTGAAATTTCACTAATATTAGGTATGTTTTTAATAATTGTTCTTATATTTCTTATTCGGCGTTTTTTCAAGAAAACGCAACAAAGCACACCACCTACTATCCAACTCCCCAATCTTCCCCCCGCCCAAGCCTCTGAAAATTTTACCAACCCCTCTAATGAAACCTATGTATTACGTAGATTACCGGAAGATATTTATAGGCGTTTTCCGGTAGATACATATTCAACTAAACGTTGTAATGACTTCAGTCATGAAGATTGTATGATATGTAATTTTCCTTTTGTTGATGGAGAGGAGCTTTGTATACTTCCTGTTTGCCGCCATGTATTTCACTCTCACTGTACTAGTTCATGGTTTTTAAGCCATGATTGTCGTTGTACAGTGTGCCGTCATGATTATTTTGACGGTTTTAATAATGATCAATTAGTAGTGTAA

Protein sequence

MKKQTKQNVAVLLFRLHDSVDRVKGSLLTSFIDIMCTNFRLQFCFLQNPIVLLGTLIWMKISCFGRFTVASILLAQLGICVGDYGDNFNWGGILHGHEWVIEISLILGMFLIIVLIFLIRRFFKKTQQSTPPTIQLPNLPPAQASENFTNPSNETYVLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVFHSHCTSSWFLSHDCRCTVCRHDYFDGFNNDQLVV
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo25981.1Spo25981.1mRNA


Homology
[Close]
BLAST of Spo25981.1 vs. NCBI nr
Match: gi|950951178|ref|XP_014495591.1| (PREDICTED: RING-H2 finger protein ATL5-like [Vigna radiata var. radiata])

HSP 1 Score: 66.2 bits (160), Expect = 8.800e-8
Identity = 37/136 (27.21%), Postives = 67/136 (49.26%), Query Frame = 1 

		  

Query: 95  HGHEWVIEISLILGMFLIIVLIFLIRRFFKKTQQSTPPTIQLPNLPPAQASENFTNPSNE 154
           + H   + +   + +FL+++LI L   + +  ++       L +  P   + +F+ P  +
Sbjct: 11  YSHNGKVMVGTAILLFLLVILIILFNVYVRYCRRLRRHGSLLSHSLP---TTSFSEPCLD 70

Query: 155 TYVLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVFHSHC 214
             V++ LP          T+S     + S +DC +C   F DG+ + +LP C+H FH+HC
Sbjct: 71  PSVIKSLP----------TFSFSAAVNSSLQDCAVCLSEFADGDRVRVLPNCKHGFHTHC 130

Query: 215 TSSWFLSHDCRCTVCR 231
             +WF SH   C +CR
Sbjct: 131 IDAWFASHS-TCPLCR 132
[Close]
BLAST of Spo25981.1 vs. NCBI nr
Match: gi|697181758|ref|XP_009599874.1| (PREDICTED: RING-H2 finger protein ATL78-like [Nicotiana tomentosiformis])

HSP 1 Score: 65.5 bits (158), Expect = 1.500e-7
Identity = 31/90 (34.44%), Postives = 46/90 (51.11%), Query Frame = 1 

		  

Query: 142 AQASENFTNPSNETYVLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELC 201
           + +S N+TN S        + +   + FP+ TY+T+  +     +C+IC   FV GE++ 
Sbjct: 89  SDSSSNYTNASATKLPNNGIRKKALKMFPIITYTTELKHPGLDSECVICLSEFVAGEKVR 148

Query: 202 ILPVCRHVFHSHCTSSWFLSHDCRCTVCRH 232
           +LP C H FH  C   W  SH   C  CRH
Sbjct: 149 VLPKCSHGFHVRCIDKWLNSHS-SCPTCRH 177
[Close]
BLAST of Spo25981.1 vs. NCBI nr
Match: gi|901817015|gb|KMZ71056.1| (hypothetical protein ZOSMA_189G00170 [Zostera marina])

HSP 1 Score: 65.5 bits (158), Expect = 1.500e-7
Identity = 41/154 (26.62%), Postives = 70/154 (45.45%), Query Frame = 1 

		  

Query: 91  GGILHGHEWVIEISLILGMFLIIVLIFLIRRFFKKTQQSTPPTIQLPNLPPAQASENFTN 150
           G  + G   VI ++++L +F+    IF +  FFK   +S+  +  +      +   +F  
Sbjct: 5   GSQVVGVSSVIVVAIVLFLFIATAFIFFMYVFFKSQWRSSTSSSAI-----TRYQFDFAE 64

Query: 151 PSNETYVLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVF 210
             + +     L   I    PV  Y  +  +D +  +C +C    VDGE++ +LP C H F
Sbjct: 65  RDSVSAPRTSLDSAILHSLPVYIYKAENHSDATTLECAVCLSEVVDGEKIRLLPKCNHEF 124

Query: 211 HSHCTSSWFLSHDCRCTVCRHDYFDGFNNDQLVV 245
           H  C   WF SH   C +CR+      ++  LV+
Sbjct: 125 HLDCIDMWFHSHS-TCPLCRNPVAADASSSDLVI 152
[Close]
BLAST of Spo25981.1 vs. NCBI nr
Match: gi|571446647|ref|XP_006577152.1| (PREDICTED: RING-H2 finger protein ATL5-like [Glycine max])

HSP 1 Score: 65.1 bits (157), Expect = 2.000e-7
Identity = 34/136 (25.00%), Postives = 64/136 (47.06%), Query Frame = 1 

		  

Query: 95  HGHEWVIEISLILGMFLIIVLIFLIRRFFKKTQQSTPPTIQLPNLPPAQASENFTNPSNE 154
           + H   + +   + +F++I++I     F +  ++             + A+ +  +P  +
Sbjct: 12  YAHNGKVMVGTAILLFILIIIIIFFHTFVRFCRRRRRRLFSRSLPTNSSAAASLDDPCLD 71

Query: 155 TYVLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVFHSHC 214
             V++ LP          T++       S +DC +C   F DG+E  +LP C+H FH+HC
Sbjct: 72  PSVIKSLP----------TFTFSAATHRSLQDCAVCLSEFADGDEGRVLPNCKHAFHAHC 131

Query: 215 TSSWFLSHDCRCTVCR 231
             +WF SH  +C +CR
Sbjct: 132 IDTWFGSHS-KCPLCR 136
[Close]
BLAST of Spo25981.1 vs. NCBI nr
Match: gi|657955790|ref|XP_008369369.1| (PREDICTED: RING-H2 finger protein ATL74-like [Malus domestica])

HSP 1 Score: 65.1 bits (157), Expect = 2.000e-7
Identity = 30/75 (40.00%), Postives = 42/75 (56.00%), Query Frame = 1 

		  

Query: 161 LPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVFHSHCTSSWFL 220
           L + I RR P+  Y T    + +  DC IC   F+DG+++ +LP C H FH+ C  +WFL
Sbjct: 105 LKKSILRRIPIVIYGTGL--NIAATDCPICLGEFMDGQKVRLLPKCNHGFHARCIDTWFL 164

Query: 221 SHDCRCTVCRHDYFD 236
           SH   C  CRH   +
Sbjct: 165 SHS-SCPTCRHSLLE 176
[Close]
BLAST of Spo25981.1 vs. UniProtKB/TrEMBL
Match: A0A162NG11_PHYB8 (Uncharacterized protein OS=Phycomyces blakesleeanus (strain ATCC 8743b / FGSC 10004 / NBRC 33097 / NRRL 1555) GN=PHYBLDRAFT_172440 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.100e-8
Identity = 27/71 (38.03%), Postives = 41/71 (57.75%), Query Frame = 1 

		  

Query: 162 PEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVFHSHCTSSWFLS 221
           P DI  + P+ T+  ++  D  HE+C IC   ++D + L  LP CRH FH+ C  +W  S
Sbjct: 199 PSDIVTKLPLRTFRREKSIDVDHEECAICLEDYIDEDTLRTLP-CRHEFHAGCVDAWLTS 258

Query: 222 HDCRCTVCRHD 233
           H   C +C++D
Sbjct: 259 HKKFCPICKYD 268
[Close]
BLAST of Spo25981.1 vs. UniProtKB/TrEMBL
Match: A0A0K9PQ07_ZOSMR (Uncharacterized protein OS=Zostera marina GN=ZOSMA_189G00170 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.000e-7
Identity = 41/154 (26.62%), Postives = 70/154 (45.45%), Query Frame = 1 

		  

Query: 91  GGILHGHEWVIEISLILGMFLIIVLIFLIRRFFKKTQQSTPPTIQLPNLPPAQASENFTN 150
           G  + G   VI ++++L +F+    IF +  FFK   +S+  +  +      +   +F  
Sbjct: 5   GSQVVGVSSVIVVAIVLFLFIATAFIFFMYVFFKSQWRSSTSSSAI-----TRYQFDFAE 64

Query: 151 PSNETYVLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVF 210
             + +     L   I    PV  Y  +  +D +  +C +C    VDGE++ +LP C H F
Sbjct: 65  RDSVSAPRTSLDSAILHSLPVYIYKAENHSDATTLECAVCLSEVVDGEKIRLLPKCNHEF 124

Query: 211 HSHCTSSWFLSHDCRCTVCRHDYFDGFNNDQLVV 245
           H  C   WF SH   C +CR+      ++  LV+
Sbjct: 125 HLDCIDMWFHSHS-TCPLCRNPVAADASSSDLVI 152
[Close]
BLAST of Spo25981.1 vs. UniProtKB/TrEMBL
Match: I1JQN2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G215500 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.400e-7
Identity = 34/136 (25.00%), Postives = 64/136 (47.06%), Query Frame = 1 

		  

Query: 95  HGHEWVIEISLILGMFLIIVLIFLIRRFFKKTQQSTPPTIQLPNLPPAQASENFTNPSNE 154
           + H   + +   + +F++I++I     F +  ++             + A+ +  +P  +
Sbjct: 12  YAHNGKVMVGTAILLFILIIIIIFFHTFVRFCRRRRRRLFSRSLPTNSSAAASLDDPCLD 71

Query: 155 TYVLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVFHSHC 214
             V++ LP          T++       S +DC +C   F DG+E  +LP C+H FH+HC
Sbjct: 72  PSVIKSLP----------TFTFSAATHRSLQDCAVCLSEFADGDEGRVLPNCKHAFHAHC 131

Query: 215 TSSWFLSHDCRCTVCR 231
             +WF SH  +C +CR
Sbjct: 132 IDTWFGSHS-KCPLCR 136
[Close]
BLAST of Spo25981.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CT32_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g042470 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.400e-7
Identity = 31/87 (35.63%), Postives = 46/87 (52.87%), Query Frame = 1 

		  

Query: 158 LRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVFHSHCTSS 217
           +R++P  +Y      T S +  N+    +CMIC   FV+GE + +LP C+H FHS C  +
Sbjct: 103 IRQIPTTLYHI----TSSGRTINNVMSTECMICLGEFVEGENIKVLPKCKHGFHSKCIDT 162

Query: 218 WFLSHDCRCTVCRHDYFDGFNNDQLVV 245
           W LSH   C  CR    +   N  ++V
Sbjct: 163 WLLSHS-TCPTCRQSLSEWARNGAILV 184
[Close]
BLAST of Spo25981.1 vs. UniProtKB/TrEMBL
Match: M1A638_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400006044 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.000e-7
Identity = 31/82 (37.80%), Postives = 43/82 (52.44%), Query Frame = 1 

		  

Query: 150 NPSNETYVLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHV 209
           NPS+   V R + +   + FPV TY+T+  +     +C+IC   F  GE++ +LP C H 
Sbjct: 101 NPSSTKLVNRGIEKKTLKTFPVITYTTELKHPGFDSECVICLSEFGIGEKIKVLPKCNHG 160

Query: 210 FHSHCTSSWFLSHDCRCTVCRH 232
           FH  C   W  SH   C  CRH
Sbjct: 161 FHVKCIDKWLNSHS-SCPTCRH 181
[Close]
BLAST of Spo25981.1 vs. ExPASy Swiss-Prot
Match: ATL76_ARATH (E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana GN=ATL76 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.000e-8
Identity = 43/141 (30.50%), Postives = 67/141 (47.52%), Query Frame = 1 

		  

Query: 94  LHGHEWVIEISLILGMFLIIVLIFLIRRFFKKTQQ---STPPTIQLPNLPPAQASENFTN 153
           L G+  ++   LI G+   + L ++IR  F+++ +   S P    + +L   ++S N   
Sbjct: 54  LKGNVLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISEP----ISSLSTPRSSSN--- 113

Query: 154 PSNETYVLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVF 213
                   + + +   R FPV +YS +       E+C+IC   FV GE+L +LP C H F
Sbjct: 114 --------KGIKKKALRMFPVVSYSREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGF 173

Query: 214 HSHCTSSWFLSHDCRCTVCRH 232
           H  C   W L H   C  CRH
Sbjct: 174 HVRCIDKW-LQHHLTCPKCRH 178
[Close]
BLAST of Spo25981.1 vs. ExPASy Swiss-Prot
Match: ATL74_ARATH (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.700e-7
Identity = 25/69 (36.23%), Postives = 35/69 (50.72%), Query Frame = 1 

		  

Query: 167 RRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVFHSHCTSSWFLSHDCRC 226
           ++FPV  Y +      +  +C IC   F DGE + +LP C H FH  C  +W +SH   C
Sbjct: 86  KKFPVAEYGSGEVK-IAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHS-SC 145

Query: 227 TVCRHDYFD 236
             CRH   +
Sbjct: 146 PNCRHSLIE 152
[Close]
BLAST of Spo25981.1 vs. ExPASy Swiss-Prot
Match: ATL10_ARATH (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.700e-7
Identity = 41/141 (29.08%), Postives = 65/141 (46.10%), Query Frame = 1 

		  

Query: 94  LHGHEWVIEISLILGMFLIIVLIFLIRRFFKKTQQ---STPPTIQLPNLPPAQASENFTN 153
           L G+  ++   LI G+   + L ++IR   +++ +   S P    +P+L   + S N   
Sbjct: 54  LSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEP----VPSLSSTRGSSN--- 113

Query: 154 PSNETYVLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVF 213
                   + + +   R FPV +YS +       E+C+IC   FV GE+L +LP C H F
Sbjct: 114 --------KGIKKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGF 173

Query: 214 HSHCTSSWFLSHDCRCTVCRH 232
           H  C   W   H   C  CR+
Sbjct: 174 HVRCIDKWLQQH-LTCPKCRN 178
[Close]
BLAST of Spo25981.1 vs. ExPASy Swiss-Prot
Match: ATL75_ARATH (RING-H2 finger protein ATL75 OS=Arabidopsis thaliana GN=ATL75 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 9.700e-7
Identity = 41/138 (29.71%), Postives = 62/138 (44.93%), Query Frame = 1 

		  

Query: 94  LHGHEWVIEISLILGMFLIIVLIFLIRRFFKKTQQSTPPTIQLPNLPPAQASENFTNPSN 153
           L G+  ++   LI G+   + L ++IR  F++T  S   +  +  L     S N      
Sbjct: 55  LSGNVLMLLSVLICGIICCLGLHYIIRCAFRRTS-SFMISEPIAGLSTPCGSSN------ 114

Query: 154 ETYVLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVFHSH 213
                + + +   R FPV +YS +       E+C+IC   FV GE++ +LP C H FH  
Sbjct: 115 -----KGINKKALRMFPVVSYSPEMNLPGLGEECVICLSDFVSGEQIRMLPKCHHGFHVR 174

Query: 214 CTSSWFLSHDCRCTVCRH 232
           C   W   H   C  CRH
Sbjct: 175 CIDKWLQQH-LTCPKCRH 179
[Close]
BLAST of Spo25981.1 vs. ExPASy Swiss-Prot
Match: ATL73_ARATH (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana GN=ATL73 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.300e-6
Identity = 37/139 (26.62%), Postives = 62/139 (44.60%), Query Frame = 1 

		  

Query: 97  HEWVIEISLILGMFLIIVLIFLIRRFFKKTQQSTPPTIQLPNLPPAQASENFTNPSNETY 156
           H  +I  +L+  +   + +  ++R   + T++ TP      N  P   + N         
Sbjct: 40  HMVIILAALLCALICALGINSVLRCVLRCTRRFTP------NEDPVDTNAN--------- 99

Query: 157 VLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVFHSHCTS 216
           V + + +   +  PVD+YS +        +C+IC   FV+GE + +LP C H FH  C  
Sbjct: 100 VAKGIKKRALKVIPVDSYSPEL--KMKATECLICLGDFVEGETVRVLPKCNHGFHVKCID 159

Query: 217 SWFLSHDCRCTVCRHDYFD 236
           +W LSH   C  CR    +
Sbjct: 160 TWLLSHS-SCPTCRQSLLE 160
[Close]
BLAST of Spo25981.1 vs. TAIR (Arabidopsis)
Match: AT1G49210.1 (RING/U-box superfamily protein)

HSP 1 Score: 60.1 bits (144), Expect = 2.200e-9
Identity = 43/141 (30.50%), Postives = 67/141 (47.52%), Query Frame = 1 

		  

Query: 94  LHGHEWVIEISLILGMFLIIVLIFLIRRFFKKTQQ---STPPTIQLPNLPPAQASENFTN 153
           L G+  ++   LI G+   + L ++IR  F+++ +   S P    + +L   ++S N   
Sbjct: 54  LKGNVLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISEP----ISSLSTPRSSSN--- 113

Query: 154 PSNETYVLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVF 213
                   + + +   R FPV +YS +       E+C+IC   FV GE+L +LP C H F
Sbjct: 114 --------KGIKKKALRMFPVVSYSREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGF 173

Query: 214 HSHCTSSWFLSHDCRCTVCRH 232
           H  C   W L H   C  CRH
Sbjct: 174 HVRCIDKW-LQHHLTCPKCRH 178
[Close]
BLAST of Spo25981.1 vs. TAIR (Arabidopsis)
Match: AT5G01880.1 (RING/U-box superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 3.200e-8
Identity = 25/69 (36.23%), Postives = 35/69 (50.72%), Query Frame = 1 

		  

Query: 167 RRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVFHSHCTSSWFLSHDCRC 226
           ++FPV  Y +      +  +C IC   F DGE + +LP C H FH  C  +W +SH   C
Sbjct: 86  KKFPVAEYGSGEVK-IAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHS-SC 145

Query: 227 TVCRHDYFD 236
             CRH   +
Sbjct: 146 PNCRHSLIE 152
[Close]
BLAST of Spo25981.1 vs. TAIR (Arabidopsis)
Match: AT1G49220.1 (RING/U-box superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 3.200e-8
Identity = 41/141 (29.08%), Postives = 65/141 (46.10%), Query Frame = 1 

		  

Query: 94  LHGHEWVIEISLILGMFLIIVLIFLIRRFFKKTQQ---STPPTIQLPNLPPAQASENFTN 153
           L G+  ++   LI G+   + L ++IR   +++ +   S P    +P+L   + S N   
Sbjct: 54  LSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEP----VPSLSSTRGSSN--- 113

Query: 154 PSNETYVLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVF 213
                   + + +   R FPV +YS +       E+C+IC   FV GE+L +LP C H F
Sbjct: 114 --------KGIKKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGF 173

Query: 214 HSHCTSSWFLSHDCRCTVCRH 232
           H  C   W   H   C  CR+
Sbjct: 174 HVRCIDKWLQQH-LTCPKCRN 178
[Close]
BLAST of Spo25981.1 vs. TAIR (Arabidopsis)
Match: AT1G49200.1 (RING/U-box superfamily protein)

HSP 1 Score: 55.5 bits (132), Expect = 5.500e-8
Identity = 41/138 (29.71%), Postives = 62/138 (44.93%), Query Frame = 1 

		  

Query: 94  LHGHEWVIEISLILGMFLIIVLIFLIRRFFKKTQQSTPPTIQLPNLPPAQASENFTNPSN 153
           L G+  ++   LI G+   + L ++IR  F++T  S   +  +  L     S N      
Sbjct: 55  LSGNVLMLLSVLICGIICCLGLHYIIRCAFRRTS-SFMISEPIAGLSTPCGSSN------ 114

Query: 154 ETYVLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVFHSH 213
                + + +   R FPV +YS +       E+C+IC   FV GE++ +LP C H FH  
Sbjct: 115 -----KGINKKALRMFPVVSYSPEMNLPGLGEECVICLSDFVSGEQIRMLPKCHHGFHVR 174

Query: 214 CTSSWFLSHDCRCTVCRH 232
           C   W   H   C  CRH
Sbjct: 175 CIDKWLQQH-LTCPKCRH 179
[Close]
BLAST of Spo25981.1 vs. TAIR (Arabidopsis)
Match: AT5G05280.1 (RING/U-box superfamily protein)

HSP 1 Score: 55.1 bits (131), Expect = 7.200e-8
Identity = 37/139 (26.62%), Postives = 62/139 (44.60%), Query Frame = 1 

		  

Query: 97  HEWVIEISLILGMFLIIVLIFLIRRFFKKTQQSTPPTIQLPNLPPAQASENFTNPSNETY 156
           H  +I  +L+  +   + +  ++R   + T++ TP      N  P   + N         
Sbjct: 40  HMVIILAALLCALICALGINSVLRCVLRCTRRFTP------NEDPVDTNAN--------- 99

Query: 157 VLRRLPEDIYRRFPVDTYSTKRCNDFSHEDCMICNFPFVDGEELCILPVCRHVFHSHCTS 216
           V + + +   +  PVD+YS +        +C+IC   FV+GE + +LP C H FH  C  
Sbjct: 100 VAKGIKKRALKVIPVDSYSPEL--KMKATECLICLGDFVEGETVRVLPKCNHGFHVKCID 159

Query: 217 SWFLSHDCRCTVCRHDYFD 236
           +W LSH   C  CR    +
Sbjct: 160 TWLLSHS-SCPTCRQSLLE 160
The following BLAST results are available for this feature:
BLAST of Spo25981.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|950951178|ref|XP_014495591.1|8.8e-827.2PREDICTED: RING-H2 finger prot... [more]
gi|697181758|ref|XP_009599874.1|1.5e-734.4PREDICTED: RING-H2 finger prot... [more]
gi|901817015|gb|KMZ71056.1|1.5e-726.6hypothetical protein ZOSMA_189... [more]
gi|571446647|ref|XP_006577152.1|2.0e-725.0PREDICTED: RING-H2 finger prot... [more]
gi|657955790|ref|XP_008369369.1|2.0e-740.0PREDICTED: RING-H2 finger prot... [more]
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BLAST of Spo25981.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A162NG11_PHYB86.1e-838.0Uncharacterized protein OS=Phy... [more]
A0A0K9PQ07_ZOSMR1.0e-726.6Uncharacterized protein OS=Zos... [more]
I1JQN2_SOYBN1.4e-725.0Uncharacterized protein OS=Gly... [more]
A0A0J8CT32_BETVU1.4e-735.6Uncharacterized protein OS=Bet... [more]
M1A638_SOLTU3.0e-737.8Uncharacterized protein OS=Sol... [more]
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BLAST of Spo25981.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ATL76_ARATH4.0e-830.5E3 ubiquitin-protein ligase AT... [more]
ATL74_ARATH5.7e-736.2RING-H2 finger protein ATL74 O... [more]
ATL10_ARATH5.7e-729.0RING-H2 finger protein ATL10 O... [more]
ATL75_ARATH9.7e-729.7RING-H2 finger protein ATL75 O... [more]
ATL73_ARATH1.3e-626.6RING-H2 finger protein ATL73 O... [more]
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BLAST of Spo25981.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT1G49210.12.2e-930.5RING/U-box superfamily protein[more]
AT5G01880.13.2e-836.2RING/U-box superfamily protein[more]
AT1G49220.13.2e-829.0RING/U-box superfamily protein[more]
AT1G49200.15.5e-829.7RING/U-box superfamily protein[more]
AT5G05280.17.2e-826.6RING/U-box superfamily protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 186..230
score: 3.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 187..230
score: 9
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 184..232
score: 3.0
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 186..235
score: 1.24

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0006796 phosphate-containing compound metabolic process
biological_process GO:0052543 callose deposition in cell wall
biological_process GO:0008612 peptidyl-lysine modification to peptidyl-hypusine
biological_process GO:0050983 obsolete deoxyhypusine biosynthetic process from spermidine
biological_process GO:0009553 embryo sac development
biological_process GO:0010582 floral meristem determinacy
biological_process GO:0009867 jasmonic acid mediated signaling pathway
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0010076 maintenance of floral meristem identity
biological_process GO:0015940 pantothenate biosynthetic process
biological_process GO:0007017 microtubule-based process
biological_process GO:0009103 lipopolysaccharide biosynthetic process
biological_process GO:0009245 lipid A biosynthetic process
biological_process GO:0000165 MAPK cascade
biological_process GO:0009556 microsporogenesis
biological_process GO:0031348 negative regulation of defense response
biological_process GO:0009910 negative regulation of flower development
biological_process GO:0042908 xenobiotic transport
biological_process GO:0007165 signal transduction
biological_process GO:0009086 methionine biosynthetic process
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0006310 DNA recombination
biological_process GO:0051090 regulation of DNA-binding transcription factor activity
biological_process GO:0042742 defense response to bacterium
biological_process GO:0009870 defense response signaling pathway, resistance gene-dependent
biological_process GO:0022414 reproductive process
biological_process GO:0033043 regulation of organelle organization
biological_process GO:0070647 protein modification by small protein conjugation or removal
biological_process GO:0009791 post-embryonic development
biological_process GO:0007127 meiosis I
biological_process GO:0003006 developmental process involved in reproduction
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0007059 chromosome segregation
biological_process GO:0051276 chromosome organization
biological_process GO:0006974 cellular response to DNA damage stimulus
biological_process GO:0009653 anatomical structure morphogenesis
biological_process GO:0006474 N-terminal protein amino acid acetylation
biological_process GO:0009113 purine nucleobase biosynthetic process
biological_process GO:0006189 'de novo' IMP biosynthetic process
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0009651 response to salt stress
biological_process GO:0000226 microtubule cytoskeleton organization
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0001101 response to acid chemical
biological_process GO:0010304 PSII associated light-harvesting complex II catabolic process
biological_process GO:0006508 proteolysis
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0051301 cell division
biological_process GO:0009987 cellular process
biological_process GO:0009734 auxin-activated signaling pathway
biological_process GO:0009628 response to abiotic stimulus
biological_process GO:0016310 phosphorylation
biological_process GO:1901700 response to oxygen-containing compound
biological_process GO:0009408 response to heat
biological_process GO:0006950 response to stress
biological_process GO:0006810 transport
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0048510 regulation of timing of transition from vegetative to reproductive phase
biological_process GO:0009640 photomorphogenesis
biological_process GO:0048868 pollen tube development
biological_process GO:0009737 response to abscisic acid
biological_process GO:0008152 metabolic process
biological_process GO:0032880 regulation of protein localization
biological_process GO:0044262 cellular carbohydrate metabolic process
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0006612 protein targeting to membrane
biological_process GO:0000911 cytokinesis by cell plate formation
biological_process GO:0030007 cellular potassium ion homeostasis
biological_process GO:0043090 amino acid import
biological_process GO:0045892 negative regulation of transcription, DNA-templated
biological_process GO:0017148 negative regulation of translation
biological_process GO:0048481 plant ovule development
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0006007 glucose catabolic process
biological_process GO:0030244 cellulose biosynthetic process
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0010310 regulation of hydrogen peroxide metabolic process
biological_process GO:0010363 regulation of plant-type hypersensitive response
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0006417 regulation of translation
biological_process GO:0009617 response to bacterium
biological_process GO:0009266 response to temperature stimulus
biological_process GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway
biological_process GO:0032259 methylation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
cellular_component GO:0005737 cytoplasm
cellular_component GO:0031248 protein acetyltransferase complex
cellular_component GO:0005875 microtubule associated complex
cellular_component GO:0009536 plastid
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0000325 plant-type vacuole
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009506 plasmodesma
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016301 kinase activity
molecular_function GO:0005488 binding
molecular_function GO:0000900 translation repressor activity, mRNA regulatory element binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0050662 coenzyme binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0004176 ATP-dependent peptidase activity
molecular_function GO:0052689 carboxylic ester hydrolase activity
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0034038 deoxyhypusine synthase activity
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0004637 phosphoribosylamine-glycine ligase activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0004721 phosphoprotein phosphatase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0004596 peptide alpha-N-acetyltransferase activity
molecular_function GO:0008568 microtubule-severing ATPase activity
molecular_function GO:0004252 serine-type endopeptidase activity
molecular_function GO:0009029 tetraacyldisaccharide 4'-kinase activity
molecular_function GO:0008559 xenobiotic transmembrane transporting ATPase activity
molecular_function GO:0008281 sulfonylurea receptor activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005516 calmodulin binding
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0005515 protein binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo259850.77Barchart | Table
Spo243310.76Barchart | Table
Spo233320.74Barchart | Table
Spo259870.74Barchart | Table
Spo094700.71Barchart | Table
Spo226940.71Barchart | Table
Spo177260.71Barchart | Table
Spo090080.71Barchart | Table
Spo161860.70Barchart | Table
Spo112850.70Barchart | Table
Spo126090.70Barchart | Table
Spo026650.70Barchart | Table
Spo155240.70Barchart | Table
Spo123320.70Barchart | Table
Spo056210.69Barchart | Table
Spo142400.69Barchart | Table
Spo027490.69Barchart | Table
Spo246970.69Barchart | Table
Spo247360.69Barchart | Table
Spo259880.69Barchart | Table
Spo013440.68Barchart | Table
Spo209300.68Barchart | Table
Spo243690.68Barchart | Table
Spo078290.68Barchart | Table
Spo094270.68Barchart | Table
Spo109650.68Barchart | Table
Spo159950.68Barchart | Table
Spo031990.68Barchart | Table
Spo269900.68Barchart | Table
Spo186050.68Barchart | Table
Spo237450.67Barchart | Table
Spo149090.67Barchart | Table
Spo053070.67Barchart | Table
Spo153170.67Barchart | Table
Spo220040.67Barchart | Table
Spo250770.67Barchart | Table
Spo211550.67Barchart | Table
Spo201870.67Barchart | Table
Spo092140.67Barchart | Table
Spo267890.67Barchart | Table
Spo078920.67Barchart | Table
Spo006530.67Barchart | Table
Spo251070.66Barchart | Table
Spo006770.66Barchart | Table
Spo008780.66Barchart | Table
Spo016280.66Barchart | Table
Spo019250.66Barchart | Table
Spo076850.66Barchart | Table
Spo097980.66Barchart | Table
Spo116470.66Barchart | Table
Spo152730.66Barchart | Table
Spo162400.66Barchart | Table
Spo168010.66Barchart | Table
Spo224360.66Barchart | Table
Spo230420.66Barchart | Table
Spo244300.66Barchart | Table
Spo002050.66Barchart | Table
Spo248860.65Barchart | Table
Spo193040.65Barchart | Table
Spo273640.65Barchart | Table
Spo251960.65Barchart | Table
Spo257170.65Barchart | Table
Spo132810.65Barchart | Table
Spo129540.65Barchart | Table
Spo113520.65Barchart | Table
Spo084070.65Barchart | Table
Spo050320.65Barchart | Table
Spo200500.65Barchart | Table