Spo25983 (gene)

Overview
NameSpo25983
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionRING/U-box superfamily protein
Locationchr6 : 41244843 .. 41247501 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTATAGTCTCTCTCATGAGTCTTGCCCACATTATTTCGTATGTTTTTCTTTTATGCCTCAGGTTTTAATTTTCAATTAATTTGGAAAAATCTTCACATAGACGTTGTTAATTGTTTATTTGATGGGCACATACATGGTTAGTTGCTAATTTATCTTCCACCCTTGTGTCAACTGTTCAGTAGTAGGTATTGAGTAGCAACTCGTTCCTCTGCTTTGGTAGTTTGGTTTCCTTAATCTGTAAAATGGAAGAATTTCTGTAATTGAGTTAAACTAATAATTCAGGAAGTCTCCATTGCATGTATAAGTGATCTGTTTCAATAAAGCATATGAAAAAATAAACTAAACAAAATGTTGCAGTTCTGCTTTTCCACTTGCATGATTCAATAGATCATGTTATAGGTTCATTATTGACTTTGTTCATACACATTCTGTGCACAAATTTAAGGTGCCATTATATGCTTGTTTAAGTTAGCTTGAATGTATATGAACTGTTTGGGGCACCTGGCACCAACACTTAATTTAGGATATTTATAACAGTATAATTTGTGAGTGTGTTGAAATATATATGGGACTGGTTCGTAATGTAGTATGTGTTTATATTTTTATAACGGTTTTGAGGACATTAGTGTTACGAGCACATGTGCATTCTTTGTGTGCTTGTAAATAATTGATCTTTTCAAATTCAATCTGATCATTTCGTTCCATAAGTTTTGTTTTTTACTTATACAAAATGACTTAGGCTTTCCATTTGGCGTCAACGTATTACGTAGACTCAAGATTAAACCTTTATGAAAAAACTTGTGTCCGTAGGAAATAATCCTCTATTCAAAAGAATACAGGAGATTTGTTATGTGTTGTGATATTGCTTTTGAATCTTCTTGCTTGATTTTTTGTTCAAATTTGTACGAATTGCTTGACTTTGGCTTAATTGTTTCAAAGGCCATACTCGGTATATTTTTCTGTAGCCTGCTAAGTAATTGTATGCATGCTACGATTTTGTTTCTTGCAAAACCCTATTGTATTACTTGGAACACTAATTTGGATGAAAATCAGCTGTTGTGGAAGTTCTAGAATTAATTTCTCATGTTAGATGACTTAGATCCCTTTAAAGAGTTGAAGTTGACTTGAAGCAATTAGATGACTTAGATACCTTTGATAATGTTCCCTAATTTGACTTGAATTCGGTTGATGTAAGGGTGTTCTTACCCTATGCATTTAAGGGGTTTAATAGTGTGTTGACTTTGCTAGAGTTCTGCCCTGCTTCGGAGCTGATGAATGATGTCAATTAATTTGCTTCTTAAACTCTGTAGTTGTAGCAAAAGAAGTTTCAGGGTGCTCATTACTCATTAGGTTCGAAACGATCATGATCGAAATTCTGGTAGGGGGTTCGATTTGAATTTGTGTATTGGACTTCTTTCTAGTGATCTACCGAACTCAGAAAATAAAAAGTTCTGGACCTATGTTTTCTACATTCTATATACGATTATGTTTAGTTTCTTCCGATCTCAGTTTACAATATTGAATTTAGGTTGCAATAATTTATGCTTGCTTAAGTTAGCTGTAAAACGTTTGAAAGCCCTATAAATTATCCACGGGTGAACTGAAACTTAATAATATAGGATGTTTTGGTTAATAGTTCAATGTTGACGGGTTTTAGAATATAATATCTGGAGAAGTTAATTAGCAGCGTTGGAGTCCTGAAGTGAATTTTATGCATAAAGTAGTAGATTTTATCTATGCGTTGCAAAACATTTGGTGTTTCATCCCTTAGAAACCGACTGACATTTATTTTAAATTAAGCGATCCTAATGATTATCCTAGCTTATTTTTACAGTAGCAATTATCCGATAATATTTAACAAAAATCTCTATGGCTTAATCTATAGCTTATCATGTGAATTATTCAGTATTAGATTTGGAGTGTGAATTTTTGATATTTTATTTTTGGTACAGGTTTACTGTTGCATCAATCCTACTGACACAACTCGGAATCTCTGTAGGAGATGATGGTCATCTTTACGGGCACGATTATTTTCATGGACATGAATTGATTATTCAAGTTTCACTACTGTTAGGTATTATTTTAATAATTGTTCTTATATTTCTTATTAGACGCTTTTTCAAGAAAAGGCAACAACATAGTACACCACCCAGTATCCAACTCCCTAATGTTCCCCCGTCCCAAGTGCCTGAAACTTCTACTAACCTCTCTAATACTCTTCCGGAAACCTATGTATTACGTAGATTACCCGAAGAGATTTACAGAAGTTTTCAGGTAGATACGTATTCAACTGAACGTTGTAATGACTTCAGTCATATAGATTGTATGATATGTAATTTTGCTTTTGTTGATGGAGAGGACCTATGTATACTTCCTGTTTGCCGCCATGTTTTTCACTCTAAGTGTACTTAGTTCATGGTTTTTAAGCCATGATTGTCGTTGTACAGTCTGCCGTCATGATTATTTTGACGGTTTTAATAATGATCAATTAGTAATGTAAAAAACTATGTATGTTGCATTGTACATGTATAGATAAGTTTTATCTTTTAATTATATATTTTAATATACTAATTATTGACTCTGTGTTATATACATAGTATTTGTATGAGTTTTTGTAAAGCCGTATTTTGTGATTTCAACCCATCATGTAAGAAT

mRNA sequence

ATGCCTATAGTCTCTCTCATGAGTCTTGCCCACATTATTTCGTTTACTGTTGCATCAATCCTACTGACACAACTCGGAATCTCTGTAGGAGATGATGGTCATCTTTACGGGCACGATTATTTTCATGGACATGAATTGATTATTCAAGTTTCACTACTGTTAGGTATTATTTTAATAATTGTTCTTATATTTCTTATTAGACGCTTTTTCAAGAAAAGGCAACAACATAGTACACCACCCAGTATCCAACTCCCTAATGTTCCCCCGTCCCAAGTGCCTGAAACTTCTACTAACCTCTCTAATACTCTTCCGGAAACCTATGTATTACGTAGATTACCCGAAGAGATTTACAGAAGTTTTCAGGTAGATACGTATTCAACTGAACGTTGTAATGACTTCAGTCATATAGATTGTATGATATGTAATTTTGCTTTTGTTGATGGAGAGGACCTATGTATACTTCCTGTTTGCCGCCATGTTTTTCACTCTAAGTGTACTTAGTTCATGGTTTTTAAGCCATGATTGTCGTTGTACAGTCTGCCGTCATGATTATTTTGACGGTTTTAATAATGATCAATTAGTAATGTAAAAAACTATGTATGTTGCATTGTACATGTATAGATAAGTTTTATCTTTTAATTATATATTTTAATATACTAATTATTGACTCTGTGTTATATACATAGTATTTGTATGAGTTTTTGTAAAGCCGTATTTTGTGATTTCAACCCATCATGTAAGAAT

Coding sequence (CDS)

ATGCCTATAGTCTCTCTCATGAGTCTTGCCCACATTATTTCGTTTACTGTTGCATCAATCCTACTGACACAACTCGGAATCTCTGTAGGAGATGATGGTCATCTTTACGGGCACGATTATTTTCATGGACATGAATTGATTATTCAAGTTTCACTACTGTTAGGTATTATTTTAATAATTGTTCTTATATTTCTTATTAGACGCTTTTTCAAGAAAAGGCAACAACATAGTACACCACCCAGTATCCAACTCCCTAATGTTCCCCCGTCCCAAGTGCCTGAAACTTCTACTAACCTCTCTAATACTCTTCCGGAAACCTATGTATTACGTAGATTACCCGAAGAGATTTACAGAAGTTTTCAGGTAGATACGTATTCAACTGAACGTTGTAATGACTTCAGTCATATAGATTGTATGATATGTAATTTTGCTTTTGTTGATGGAGAGGACCTATGTATACTTCCTGTTTGCCGCCATGTTTTTCACTCTAAGTGTACTTAG

Protein sequence

MPIVSLMSLAHIISFTVASILLTQLGISVGDDGHLYGHDYFHGHELIIQVSLLLGIILIIVLIFLIRRFFKKRQQHSTPPSIQLPNVPPSQVPETSTNLSNTLPETYVLRRLPEEIYRSFQVDTYSTERCNDFSHIDCMICNFAFVDGEDLCILPVCRHVFHSKCT
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo25983.1Spo25983.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo25983.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25983.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25983.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25983.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF17123zf-RING_11coord: 137..165
score: 2.
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 136..165
score: 3.
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 125..165
score: 2.4

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051301 cell division
biological_process GO:0009734 auxin-activated signaling pathway
biological_process GO:0006508 proteolysis
biological_process GO:0010304 PSII associated light-harvesting complex II catabolic process
biological_process GO:0032880 regulation of protein localization
biological_process GO:0009408 response to heat
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0004176 ATP-dependent peptidase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008568 microtubule-severing ATPase activity
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0046983 protein dimerization activity
RNA-Seq Expression