Spo25988 (gene)

Overview
NameSpo25988
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionRing finger protein, putative
Locationchr6 : 41175001 .. 41179197 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACGCTTTCTAAAACACTGTCGCAAACTCGCGAAGCTGTGAATACACTGGGAAAATTCTAGAAAGATTTGTGAGTCTGCAGTTGAAGGTGTAACGAATCAACGATGCTAAATCTCCCTGTCGTGGAGCCGCCGGCGCGGCAGATCACGCAGTGGTTGTGGTGGCGGAGACGGAAGCTATGGTTCTATCTTATTTCAACGAAGGTGTTTTTCTTTCTTAGTTATTTCCGCTATTATTGGTAGATTAACACCCAATTAGATGCTACTGTCATTTTTGAAGTGATTTGTTGATGTCCTAGATTTATTGGTGACAATTTGTTTGATAATTTGGTGAACCTGGGATGGGATGTGGTGAATTTTGCGGGTTAGGGTTTTGAATTTTAGTCATGGTGCAATGAATCAATCCCCAAATTGGGATTTTCATGTTCAAGAGACAACAGATGTATTTGCTTGAGCACCCTGATCAATTTTCAATAATGACTTACTCTATATATTTTTTTAATTATAAATTACCAGCCATTGTTTGGGGTTGAGGTCTTTGGGCAATTGAATTATTGATATTTGAATAGAATTTCAAATTTTCTTAAGGTTGAAGATGATGCTTATTTCTTTCGTTGTTCTTCATAGACTCTGTTTTAAGTTGCAATTGGTGATTTGGGTGGTCATTGTTCTTGGCAGCTTAAGGGCTGATTTCCAACAAATTAGGCTACTGGCATTCAAGCAATCTATTATTGTCGACGAAGATCTAAATCAGGCAGATGTTTTAAGAAATGTAAGAAACACTAATGCTTGTAAGTAATTTGATAAGATGATGGTTAAATGTCCTATGCTACAATTCAGTGGATTTATAACTTCTATTAGAGCATCTACAATGGTAAGCTAATTTCTAAATTAGCTTGTCATGCCATATAATATTTCAAGCTATTTCCCTTTCTAGCTAGTTAGTACCCTAGTGGTTAGCTACTAGCTTGATATTTAATGTAGTCATATTTGTCAATTAATATTTTAATTTAATTTAATTTAATATTATTTCATTGGCCAAGTTTTTTCAAGCAAATTAGCTTAAATAAGCTAATTTGCTTGGCCAAGCTAATTTATTATATCAACTCCAATGGTCAAGCTAGTAGCTTGGAATTTCTAAAAATTGCAAGCAAGTCCCTAGCTACAACCATTGGAGATGCTCTTAGTGCTTGAATACTTTTTTGACATGGGGTTCTAGAATGCAGTAGTCTGCGTCCTTCATTTTTTTTTTTTTTTTGGGATAATGTTTCGCCGAATCATGAATAAATTGTACGCAAACAAAAATCGTCAAACCTCACTACTAAATCGTACACAATTAGAAGTTTTTACTTTGTCTATTTTATTTGGTACTTATATTAAAAGCCTACTTCCACCTTCCTGTTGCAACCAAATCCTTAATCTCAGCAGAAAGAAAGAAAAAGAAAGGGTAAATGACTACCACCTCATTTCAAAATCATTTAGGCACTTCACTTATCACTTATCACTTATCACTTATCACTTAGCTTGTCAGTTGTTAGTTTGTCACCAAAGATTGCATGTATGCATCATGGATCACTGATGAATATGAAGGCATTAAGGCACAGCTAACTAATATACATAGGAAAGAAAATTGCTGAAAATTTCCATTTTACGCATCCTGTAAATTAAAGTTTGCCAACACTTACCCATTTCTAACAGCATAAAGCATATACATGCTATAAATTTATAAATACCATGCATACCTTTGTTTCTATCCACTAGTTGTGTGTTAAAATATTTTTCTCATCTTCCAGAATCCAACTTCTTCATAATTACACACTTTTGACGTTATGCCCATTCTTGATCACATCAGCCTCCTCTACATATTAGTATCGTAAAGATGGCTCTAATCTCTTCTGTGAGTCTTGTCCACGCTATTTTGTAAGTTTTCTTTTTATGTAGTATGGCTCAAGTTCTAATTTTGCATAATTTTTGAGTAATCTTCACATAGATGTTAATTGTTTATTTGATCTTTCAACCTTGTGTTAACTGCTACGTAGTAGTTATGGAGTAGTACTTGTTCCTCTAATTTGGTAGTCTGGTTTTCCTAACCAGTAAAATAGAATCATGGCTGTAATTGACTTAAGACTAATTATTCGAGCAGTCTCCATTGCATGTCTTCATGGTTCAATTACTTAGCTTCATCACAGCATGTGCAAAAACAAAGAAAAGAAAATGATGCATTTCTGTTTTTCCACTCTACACGACTCAGTAAACCATGTTAGATTCACTGTTGACTTCTTTCATGCTCATTCTGTGCACAAATTCAGGTGTCGTTATATGCTTGTCTATGTTAAGCTTGAATGTAATGAATGATGAACTGTTGGGGGAACGGGGGGCACCTGCACCGAGACTTAGGATATTTATAACATTATAACTTCTGGCGTGTTAAAATAAATGAGAGCTATTTGTCGAATGGATTATTATACTAGTCCTATAGTTTGAAACTTTGAATTAAGGCAGTAGGTACTATGTAGTACATGTTTATAACAGTTTTGAGGATAAGTGATAAGAGCATATGAGCATTGTTTGTGTGCTTCTTCAAGTAATCAATCTTTTCAGATCAATTTGATTATTTTGTCCCAATTTTTTTTTTACTTATTATAATAAATGACGTAGGCTTTGCATTTAGCGCCAACTTCATGAGTGTGTGTATAGACTTAAGCTTTAGAATCTGAAACCTTTATGAAAAAATTGTAACCCTTGGAAATAAATTCAGCCTATATTCAAATCTGGTGTGTAGACTCATGGTTTAGAATTTGATACCTTTGTGAAAAAAATTGTTGGAAATAAATTCATCCCACATCAAAATCTTGTTTTTACTTTGGTAAAAGAATACAAGAGCATTGCTATGTGATCAGTTCTTGCATTTCAATCTTCTTGCTTGATTTTTGTTCAAAGTTGACAAATTTCTTGGCTTTTTCTTAAATGCCCCAAGGACTGAACTCAGTATTTCACTGTAGCAGTTGCTACTAATTTTATGCATGTTACAATTTTGTTTCATGCAAAACCGATTGCATTATTTGGAAGTTTGAACACTAATTTGGATGAAAAACAGCTGGTATCCTGATGATGGTTCTGCTGTTGAAGTTCTTAGAGTCGATTTCTCATGTTAGATTAAGATTCCAGTTTACAATATCTCATCCATGATTGCTTAAGCTAGCCTTGAAACTTTTGAAAGCCAATAAACTAATGAACGGGGACTTGTTAATATAGGGTGTTAAAAATATGGGGAGTGATTTGTCGATCAAATTCTGATATTTGGTTTTGCCAATAGTTTGAAGTCAGACAAGTAAGTTAGGGCGGTTTTGTGAATATAATCTCTGAAGATGTTAAATAACTGCATTAAAGTCCTACAATGAATATTTATGCATAATGCAGAAGATTTATCTATGCATTGCACATCATGTGGTGTTTCATCCCTTATAAACTGACATTTATGCTGAATTAAGCGATGTAAAAGAAAACCCTAGCTTAGCTTCACAGTAACAATGATCAGTAACTTTATTAGATTTCAATGTTTTGATACAGGTTTGTTATTGTATCAAGTCTACTGGCACAACTTGGACTCTCCATGGATGATGGTGGTGGGCATAATACCTTCACACTTCATGGAATAGATAAATGGATCATCCAAGTATCACTAATATTAGGTAGTATTCTAACACTGGTTCTTATTTTTTTTATTAGACGTTTTTGCAATAAAAGGCAACAACCTACACCAAGTATCCAACTCCCTAATCTTCCCCCGTCCCAAGTGCCTGAAACTTCTACCAACCCCTCTAATACTCTTCCAGAAACCTATGTCTTATGTAGATTACCGGAAGAGATTTATAAGCGTTTTCCGGTAGATACATATTCAACTGAACGTTGTAATGACTTCAGTCATATAGATTGTATGATTTGTAATTTTTCTTTTGTTGATGGGGAGGAGCTGTGCATCCTTCCTGTTTGCCGCCATGTTTTTCATTCTCACTGTACTAGCTCATGGTTTTTAAACCATGATTGTCGTTGTACATTGTGTCGTCATGATTATTTTGACGGTTTTAGTGATGACCAATTAGTATAGTGTAAAAAGAGTTATTTTTGTTGTACTCTGTACATGCATAAGTAAATTTTATCATTTTAATAAATCATATTTATCGACTCTGTGTGATA

mRNA sequence

AAAACGCTTTCTAAAACACTGTCGCAAACTCGCGAAGCTGTGAATACACTGGGAAAATTCTAGAAAGATTTGTGAGTCTGCAGTTGAAGGTGTAACGAATCAACGATGCTAAATCTCCCTGTCGTGGAGCCGCCGGCGCGGCAGATCACGCAGTGGTTGTGGTGGCGGAGACGGAAGCTATGGTTCTATCTTATTTCAACGAAGCTTAAGGGCTGATTTCCAACAAATTAGGCTACTGGCATTCAAGCAATCTATTATTGTCGACGAAGATCTAAATCAGGCAGATGTTTTAAGAAATAATCCAACTTCTTCATAATTACACACTTTTGACGTTATGCCCATTCTTGATCACATCAGCCTCCTCTACATATTAGTATCGTAAAGATGGCTCTAATCTCTTCTGTGAGTCTTGTCCACGCTATTTTGTTTGTTATTGTATCAAGTCTACTGGCACAACTTGGACTCTCCATGGATGATGGTGGTGGGCATAATACCTTCACACTTCATGGAATAGATAAATGGATCATCCAAGTATCACTAATATTAGGTAGTATTCTAACACTGGTTCTTATTTTTTTTATTAGACGTTTTTGCAATAAAAGGCAACAACCTACACCAAGTATCCAACTCCCTAATCTTCCCCCGTCCCAAGTGCCTGAAACTTCTACCAACCCCTCTAATACTCTTCCAGAAACCTATGTCTTATGTAGATTACCGGAAGAGATTTATAAGCGTTTTCCGGTAGATACATATTCAACTGAACGTTGTAATGACTTCAGTCATATAGATTGTATGATTTGTAATTTTTCTTTTGTTGATGGGGAGGAGCTGTGCATCCTTCCTGTTTGCCGCCATGTTTTTCATTCTCACTGTACTAGCTCATGGTTTTTAAACCATGATTGTCGTTGTACATTGTGTCGTCATGATTATTTTGACGGTTTTAGTGATGACCAATTAGTATAGTGTAAAAAGAGTTATTTTTGTTGTACTCTGTACATGCATAAGTAAATTTTATCATTTTAATAAATCATATTTATCGACTCTGTGTGATA

Coding sequence (CDS)

ATGGCTCTAATCTCTTCTGTGAGTCTTGTCCACGCTATTTTGTTTGTTATTGTATCAAGTCTACTGGCACAACTTGGACTCTCCATGGATGATGGTGGTGGGCATAATACCTTCACACTTCATGGAATAGATAAATGGATCATCCAAGTATCACTAATATTAGGTAGTATTCTAACACTGGTTCTTATTTTTTTTATTAGACGTTTTTGCAATAAAAGGCAACAACCTACACCAAGTATCCAACTCCCTAATCTTCCCCCGTCCCAAGTGCCTGAAACTTCTACCAACCCCTCTAATACTCTTCCAGAAACCTATGTCTTATGTAGATTACCGGAAGAGATTTATAAGCGTTTTCCGGTAGATACATATTCAACTGAACGTTGTAATGACTTCAGTCATATAGATTGTATGATTTGTAATTTTTCTTTTGTTGATGGGGAGGAGCTGTGCATCCTTCCTGTTTGCCGCCATGTTTTTCATTCTCACTGTACTAGCTCATGGTTTTTAAACCATGATTGTCGTTGTACATTGTGTCGTCATGATTATTTTGACGGTTTTAGTGATGACCAATTAGTATAG

Protein sequence

MALISSVSLVHAILFVIVSSLLAQLGLSMDDGGGHNTFTLHGIDKWIIQVSLILGSILTLVLIFFIRRFCNKRQQPTPSIQLPNLPPSQVPETSTNPSNTLPETYVLCRLPEEIYKRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFLNHDCRCTLCRHDYFDGFSDDQLV
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo25988.1Spo25988.1mRNA


Homology
[Close]
BLAST of Spo25988.1 vs. NCBI nr
Match: gi|1009121380|ref|XP_015877424.1| (PREDICTED: RING-H2 finger protein ATL66-like [Ziziphus jujuba])

HSP 1 Score: 70.9 bits (172), Expect = 2.800e-9
Identity = 48/152 (31.58%), Postives = 73/152 (48.03%), Query Frame = 1 

		  

Query: 37  TFTLHGIDKWIIQVSLILGSILTLVLIFFIRRFCNKRQQPTPSIQLPNLPPSQVPETSTN 96
           +F +HG   + I V LIL  +L L LIF   R+  +R   TP+        + +   ST 
Sbjct: 59  SFEVHGRTLFFILVLLIL--LLILTLIFLYARWACRRHHLTPN-------NNSISAASTP 118

Query: 97  PSNTLPETYVLCRLPEEIYKRFP--------VDTYSTERCNDFSHI-DCMICNFSFVDGE 156
           P N    +  +  LP  ++K  P        V     E+  D + + +C IC  +F DG+
Sbjct: 119 PRNQGLGSDAIRGLPIVLHKSLPSSCSGPGMVKEQGQEQVEDAAAVAECCICLGAFADGD 178

Query: 157 ELCILPVCRHVFHSHCTSSWFLNHDCRCTLCR 180
           ++ +LP C H +H HC  +W +NH   C LCR
Sbjct: 179 KVKVLPPCNHCYHPHCVDAWLINHS-NCPLCR 200
[Close]
BLAST of Spo25988.1 vs. NCBI nr
Match: gi|1009121366|ref|XP_015877417.1| (PREDICTED: RING-H2 finger protein ATL66-like [Ziziphus jujuba])

HSP 1 Score: 70.9 bits (172), Expect = 2.800e-9
Identity = 48/152 (31.58%), Postives = 73/152 (48.03%), Query Frame = 1 

		  

Query: 37  TFTLHGIDKWIIQVSLILGSILTLVLIFFIRRFCNKRQQPTPSIQLPNLPPSQVPETSTN 96
           +F +HG   + I V LIL  +L L LIF   R+  +R   TP+        + +   ST 
Sbjct: 19  SFEVHGRTLFFILVLLIL--LLILTLIFLYARWACRRHHLTPN-------NNSISAASTP 78

Query: 97  PSNTLPETYVLCRLPEEIYKRFP--------VDTYSTERCNDFSHI-DCMICNFSFVDGE 156
           P N    +  +  LP  ++K  P        V     E+  D + + +C IC  +F DG+
Sbjct: 79  PRNQGLGSDAIRGLPIVLHKSLPSSCSGPGMVKEQGQEQVEDAAAVAECCICLGAFADGD 138

Query: 157 ELCILPVCRHVFHSHCTSSWFLNHDCRCTLCR 180
           ++ +LP C H +H HC  +W +NH   C LCR
Sbjct: 139 KVKVLPPCNHCYHPHCVDAWLINHS-NCPLCR 160
[Close]
BLAST of Spo25988.1 vs. NCBI nr
Match: gi|571507468|ref|XP_006595858.1| (PREDICTED: RING-H2 finger protein ATL66-like [Glycine max])

HSP 1 Score: 69.3 bits (168), Expect = 8.200e-9
Identity = 44/130 (33.85%), Postives = 60/130 (46.15%), Query Frame = 1 

		  

Query: 52  LILGSILTL--VLIFFIRRFCNKRQQPTPSIQLPNLPPSQVPETSTNPSNTLPETYVLCR 111
           ++L SI+ L   L  F RR C +R      + LP+  P         P NT  ++  + R
Sbjct: 33  IVLFSIILLFTALFVFARRICRRRHHHHNGLLLPDAVPP--------PQNTGLDSAAIKR 92

Query: 112 LPEEIYKRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFL 171
           LP  ++ R          CN  +  +C IC  +F DGE+L +LP C H FH  C   W  
Sbjct: 93  LPIVLHPR----------CNRVAEAECCICLGAFADGEKLKVLPGCDHSFHCECVDKWLT 143

Query: 172 NHDCRCTLCR 180
           NH   C LCR
Sbjct: 153 NHS-NCPLCR 143
[Close]
BLAST of Spo25988.1 vs. NCBI nr
Match: gi|571446647|ref|XP_006577152.1| (PREDICTED: RING-H2 finger protein ATL5-like [Glycine max])

HSP 1 Score: 67.0 bits (162), Expect = 4.100e-8
Identity = 43/129 (33.33%), Postives = 65/129 (50.39%), Query Frame = 1 

		  

Query: 53  ILGSILTLVLIFF--IRRFCNKRQQPTPSIQLPNLPPSQVPETSTNPSNTLPETYVLCRL 112
           IL  IL +++IFF    RFC +R++   S  LP         T+++ + +L +      L
Sbjct: 24  ILLFILIIIIIFFHTFVRFCRRRRRRLFSRSLP---------TNSSAAASLDDPC----L 83

Query: 113 PEEIYKRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFLN 172
              + K  P  T+S          DC +C   F DG+E  +LP C+H FH+HC  +WF +
Sbjct: 84  DPSVIKSLPTFTFSAATHRSLQ--DCAVCLSEFADGDEGRVLPNCKHAFHAHCIDTWFGS 136

Query: 173 HDCRCTLCR 180
           H  +C LCR
Sbjct: 144 HS-KCPLCR 136
[Close]
BLAST of Spo25988.1 vs. NCBI nr
Match: gi|645272342|ref|XP_008241349.1| (PREDICTED: RING-H2 finger protein ATL52-like [Prunus mume])

HSP 1 Score: 66.6 bits (161), Expect = 5.300e-8
Identity = 43/136 (31.62%), Postives = 67/136 (49.26%), Query Frame = 1 

		  

Query: 47  IIQVSLILGSILTLVLIFFIR-RFCNKRQQPTPSIQLPNLPPSQVPETSTNPSNTLPETY 106
           +I +  I+ + L +V   FI  +FC +R+Q    IQL      Q P + +N         
Sbjct: 22  LISLGGIVSTTLAIVAYHFIVVKFCLRRRQRLMQIQLQASLSRQPPISQSNG-------- 81

Query: 107 VLCRLPEEIYKRFPVDTYSTERCNDF--SHIDCMICNFSFVDGEELCILPVCRHVFHSHC 166
               + E++    P+ +YST+ C  F     +C+IC     DG+ + +LP C+HVFH+ C
Sbjct: 82  ----VDEKVLSSIPILSYSTKNCELFRVDQSECVICLGELEDGDMVRLLPNCKHVFHNPC 141

Query: 167 TSSWFLNHDCRCTLCR 180
              WFL H   C +CR
Sbjct: 142 IDKWFLGH-TNCPVCR 144
[Close]
BLAST of Spo25988.1 vs. UniProtKB/TrEMBL
Match: I1M7S0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G058000 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.700e-9
Identity = 44/130 (33.85%), Postives = 60/130 (46.15%), Query Frame = 1 

		  

Query: 52  LILGSILTL--VLIFFIRRFCNKRQQPTPSIQLPNLPPSQVPETSTNPSNTLPETYVLCR 111
           ++L SI+ L   L  F RR C +R      + LP+  P         P NT  ++  + R
Sbjct: 33  IVLFSIILLFTALFVFARRICRRRHHHHNGLLLPDAVPP--------PQNTGLDSAAIKR 92

Query: 112 LPEEIYKRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFL 171
           LP  ++ R          CN  +  +C IC  +F DGE+L +LP C H FH  C   W  
Sbjct: 93  LPIVLHPR----------CNRVAEAECCICLGAFADGEKLKVLPGCDHSFHCECVDKWLT 143

Query: 172 NHDCRCTLCR 180
           NH   C LCR
Sbjct: 153 NHS-NCPLCR 143
[Close]
BLAST of Spo25988.1 vs. UniProtKB/TrEMBL
Match: I1JQN2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G215500 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.800e-8
Identity = 43/129 (33.33%), Postives = 65/129 (50.39%), Query Frame = 1 

		  

Query: 53  ILGSILTLVLIFF--IRRFCNKRQQPTPSIQLPNLPPSQVPETSTNPSNTLPETYVLCRL 112
           IL  IL +++IFF    RFC +R++   S  LP         T+++ + +L +      L
Sbjct: 24  ILLFILIIIIIFFHTFVRFCRRRRRRLFSRSLP---------TNSSAAASLDDPC----L 83

Query: 113 PEEIYKRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFLN 172
              + K  P  T+S          DC +C   F DG+E  +LP C+H FH+HC  +WF +
Sbjct: 84  DPSVIKSLPTFTFSAATHRSLQ--DCAVCLSEFADGDEGRVLPNCKHAFHAHCIDTWFGS 136

Query: 173 HDCRCTLCR 180
           H  +C LCR
Sbjct: 144 HS-KCPLCR 136
[Close]
BLAST of Spo25988.1 vs. UniProtKB/TrEMBL
Match: B4FM78_MAIZE (Uncharacterized protein OS=Zea mays GN=LOC100217255 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.100e-7
Identity = 50/184 (27.17%), Postives = 79/184 (42.93%), Query Frame = 1 

		  

Query: 12  AILFVIVSSLLAQLGL---SMDDGGGHNTFTLHGIDKWIIQVSLILGSILTLVLIFFIRR 71
           A+LF+++ S  A+  L   S +   GH++ T  G     + V + L S   ++ +F I  
Sbjct: 11  AVLFLVLLSTAARPSLAQPSNNSTSGHHSRTAGGFTPTTVIVLVALVSAFVVLTLFSI-- 70

Query: 72  FCNKRQQPTPSIQLPNLPPSQVPETSTNPSNTL-----------PETYVLCRLPEEIYKR 131
           + N+     P  Q P+ P    P+   + +++            PE      L +E    
Sbjct: 71  YINRCAPTRPPPQRPSRPAPAPPDHHHHQASSATGGGGGGGVLHPERRARAGLDKEAVVS 130

Query: 132 FPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFLNHDCRCTL 182
           FP   Y   +      ++C +C  +F D +EL +LP C HVFH  C   W L     C L
Sbjct: 131 FPTAVYGDVKARVAGPLECAVCLAAFEDRDELRVLPACCHVFHPDCIDPW-LAGAATCPL 190
[Close]
BLAST of Spo25988.1 vs. UniProtKB/TrEMBL
Match: R0G1C1_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10025254mg PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.100e-7
Identity = 32/78 (41.03%), Postives = 40/78 (51.28%), Query Frame = 1 

		  

Query: 108 CRLPEEIYKRFPVDTYST--ERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTS 167
           C L E I   FP   YS   ER       +C +C   F D E L ++P+C HVFHS+C +
Sbjct: 66  CGLSEAIINSFPTFLYSEVKERRLGIGGAECAVCLCEFEDDETLRLIPICSHVFHSNCVT 125

Query: 168 SWFLNHDCRCTLCRHDYF 184
            W  +H   C LCR D F
Sbjct: 126 VWLSDHS-TCPLCRVDLF 142
[Close]
BLAST of Spo25988.1 vs. UniProtKB/TrEMBL
Match: A0A0D3CKA3_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.300e-7
Identity = 29/90 (32.22%), Postives = 47/90 (52.22%), Query Frame = 1 

		  

Query: 107 LCRLPEEIYKRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSS 166
           L  +   I +  PV  ++T+   D   I C++C     DG++  +LP C H FH+HC  S
Sbjct: 56  LASINPSILRSIPVVDFNTQGFKD--GIQCVVCLSELADGDKATVLPTCNHWFHAHCIDS 115

Query: 167 WFLNHDCRCTLCRH------DYFDGFSDDQ 191
           WF +H   C +CR+      +++ GF  D+
Sbjct: 116 WFQSHS-TCPVCRNIVGLAKNHYSGFEPDE 142
[Close]
BLAST of Spo25988.1 vs. ExPASy Swiss-Prot
Match: ATL76_ARATH (E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana GN=ATL76 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.400e-7
Identity = 43/129 (33.33%), Postives = 57/129 (44.19%), Query Frame = 1 

		  

Query: 52  LILGSILTLVLIFFIRRFCNKRQQPTPSIQLPNLPPSQVPETSTNPSNTLPETYVLCRLP 111
           LI G I  L L + IR  C  R+     I  P +     P +S+N             + 
Sbjct: 65  LICGIICCLGLHYIIR--CAFRRSSRFMISEP-ISSLSTPRSSSNKG-----------IK 124

Query: 112 EEIYKRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFLNH 171
           ++  + FPV +YS E        +C+IC   FV GE+L +LP C H FH  C   W L H
Sbjct: 125 KKALRMFPVVSYSREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKW-LQH 178

Query: 172 DCRCTLCRH 181
              C  CRH
Sbjct: 185 HLTCPKCRH 178
[Close]
BLAST of Spo25988.1 vs. ExPASy Swiss-Prot
Match: ATL73_ARATH (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana GN=ATL73 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.400e-7
Identity = 27/69 (39.13%), Postives = 36/69 (52.17%), Query Frame = 1 

		  

Query: 116 KRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFLNHDCRC 175
           K  PVD+YS E        +C+IC   FV+GE + +LP C H FH  C  +W L+H   C
Sbjct: 95  KVIPVDSYSPEL--KMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHS-SC 154

Query: 176 TLCRHDYFD 185
             CR    +
Sbjct: 155 PTCRQSLLE 160
[Close]
BLAST of Spo25988.1 vs. ExPASy Swiss-Prot
Match: ATL74_ARATH (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.500e-7
Identity = 25/69 (36.23%), Postives = 35/69 (50.72%), Query Frame = 1 

		  

Query: 116 KRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFLNHDCRC 175
           K+FPV  Y +      +  +C IC   F DGE + +LP C H FH  C  +W ++H   C
Sbjct: 86  KKFPVAEYGSGEVK-IAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHS-SC 145

Query: 176 TLCRHDYFD 185
             CRH   +
Sbjct: 146 PNCRHSLIE 152
[Close]
BLAST of Spo25988.1 vs. ExPASy Swiss-Prot
Match: ATL75_ARATH (RING-H2 finger protein ATL75 OS=Arabidopsis thaliana GN=ATL75 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.300e-6
Identity = 26/65 (40.00%), Postives = 33/65 (50.77%), Query Frame = 1 

		  

Query: 116 KRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFLNHDCRC 175
           + FPV +YS E        +C+IC   FV GE++ +LP C H FH  C   W   H   C
Sbjct: 116 RMFPVVSYSPEMNLPGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQH-LTC 175

Query: 176 TLCRH 181
             CRH
Sbjct: 176 PKCRH 179
[Close]
BLAST of Spo25988.1 vs. ExPASy Swiss-Prot
Match: ATL49_ARATH (Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana GN=ATL49 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.700e-6
Identity = 26/76 (34.21%), Postives = 36/76 (47.37%), Query Frame = 1 

		  

Query: 112 EEIYKRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFLNH 171
           + +    PV  Y +      S  DC +C   F   ++L +LP C H FH  C  +W L+H
Sbjct: 102 QSLIDTLPVFHYKSIVGLKISPFDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSH 161

Query: 172 DCRCTLCRHDYFDGFS 188
              C LCR +   GFS
Sbjct: 162 S-TCPLCRSNLLSGFS 176
[Close]
BLAST of Spo25988.1 vs. TAIR (Arabidopsis)
Match: AT1G49210.1 (RING/U-box superfamily protein)

HSP 1 Score: 56.6 bits (135), Expect = 1.900e-8
Identity = 43/129 (33.33%), Postives = 57/129 (44.19%), Query Frame = 1 

		  

Query: 52  LILGSILTLVLIFFIRRFCNKRQQPTPSIQLPNLPPSQVPETSTNPSNTLPETYVLCRLP 111
           LI G I  L L + IR  C  R+     I  P +     P +S+N             + 
Sbjct: 65  LICGIICCLGLHYIIR--CAFRRSSRFMISEP-ISSLSTPRSSSNKG-----------IK 124

Query: 112 EEIYKRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFLNH 171
           ++  + FPV +YS E        +C+IC   FV GE+L +LP C H FH  C   W L H
Sbjct: 125 KKALRMFPVVSYSREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKW-LQH 178

Query: 172 DCRCTLCRH 181
              C  CRH
Sbjct: 185 HLTCPKCRH 178
[Close]
BLAST of Spo25988.1 vs. TAIR (Arabidopsis)
Match: AT5G05280.1 (RING/U-box superfamily protein)

HSP 1 Score: 56.6 bits (135), Expect = 1.900e-8
Identity = 27/69 (39.13%), Postives = 36/69 (52.17%), Query Frame = 1 

		  

Query: 116 KRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFLNHDCRC 175
           K  PVD+YS E        +C+IC   FV+GE + +LP C H FH  C  +W L+H   C
Sbjct: 95  KVIPVDSYSPEL--KMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHS-SC 154

Query: 176 TLCRHDYFD 185
             CR    +
Sbjct: 155 PTCRQSLLE 160
[Close]
BLAST of Spo25988.1 vs. TAIR (Arabidopsis)
Match: AT5G01880.1 (RING/U-box superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 2.500e-8
Identity = 25/69 (36.23%), Postives = 35/69 (50.72%), Query Frame = 1 

		  

Query: 116 KRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFLNHDCRC 175
           K+FPV  Y +      +  +C IC   F DGE + +LP C H FH  C  +W ++H   C
Sbjct: 86  KKFPVAEYGSGEVK-IAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHS-SC 145

Query: 176 TLCRHDYFD 185
             CRH   +
Sbjct: 146 PNCRHSLIE 152
[Close]
BLAST of Spo25988.1 vs. TAIR (Arabidopsis)
Match: AT1G49200.1 (RING/U-box superfamily protein)

HSP 1 Score: 54.7 bits (130), Expect = 7.400e-8
Identity = 26/65 (40.00%), Postives = 33/65 (50.77%), Query Frame = 1 

		  

Query: 116 KRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFLNHDCRC 175
           + FPV +YS E        +C+IC   FV GE++ +LP C H FH  C   W   H   C
Sbjct: 116 RMFPVVSYSPEMNLPGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQH-LTC 175

Query: 176 TLCRH 181
             CRH
Sbjct: 176 PKCRH 179
[Close]
BLAST of Spo25988.1 vs. TAIR (Arabidopsis)
Match: AT2G18650.1 (RING/U-box superfamily protein)

HSP 1 Score: 54.3 bits (129), Expect = 9.600e-8
Identity = 26/76 (34.21%), Postives = 36/76 (47.37%), Query Frame = 1 

		  

Query: 112 EEIYKRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFLNH 171
           + +    PV  Y +      S  DC +C   F   ++L +LP C H FH  C  +W L+H
Sbjct: 102 QSLIDTLPVFHYKSIVGLKISPFDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSH 161

Query: 172 DCRCTLCRHDYFDGFS 188
              C LCR +   GFS
Sbjct: 162 S-TCPLCRSNLLSGFS 176
The following BLAST results are available for this feature:
BLAST of Spo25988.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|1009121380|ref|XP_015877424.1|2.8e-931.5PREDICTED: RING-H2 finger prot... [more]
gi|1009121366|ref|XP_015877417.1|2.8e-931.5PREDICTED: RING-H2 finger prot... [more]
gi|571507468|ref|XP_006595858.1|8.2e-933.8PREDICTED: RING-H2 finger prot... [more]
gi|571446647|ref|XP_006577152.1|4.1e-833.3PREDICTED: RING-H2 finger prot... [more]
gi|645272342|ref|XP_008241349.1|5.3e-831.6PREDICTED: RING-H2 finger prot... [more]
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BLAST of Spo25988.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
I1M7S0_SOYBN5.7e-933.8Uncharacterized protein OS=Gly... [more]
I1JQN2_SOYBN2.8e-833.3Uncharacterized protein OS=Gly... [more]
B4FM78_MAIZE3.1e-727.1Uncharacterized protein OS=Zea... [more]
R0G1C1_9BRAS3.1e-741.0Uncharacterized protein OS=Cap... [more]
A0A0D3CKA3_BRAOL5.3e-732.2Uncharacterized protein OS=Bra... [more]
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BLAST of Spo25988.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ATL76_ARATH3.4e-733.3E3 ubiquitin-protein ligase AT... [more]
ATL73_ARATH3.4e-739.1RING-H2 finger protein ATL73 O... [more]
ATL74_ARATH4.5e-736.2RING-H2 finger protein ATL74 O... [more]
ATL75_ARATH1.3e-640.0RING-H2 finger protein ATL75 O... [more]
ATL49_ARATH1.7e-634.2Putative RING-H2 finger protei... [more]
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BLAST of Spo25988.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT1G49210.11.9e-833.3RING/U-box superfamily protein[more]
AT5G05280.11.9e-839.1RING/U-box superfamily protein[more]
AT5G01880.12.5e-836.2RING/U-box superfamily protein[more]
AT1G49200.17.4e-840.0RING/U-box superfamily protein[more]
AT2G18650.19.6e-834.2RING/U-box superfamily protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 135..179
score: 2.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 136..179
score: 9
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 134..181
score: 2.9
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 125..183
score: 2.04

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0007017 microtubule-based process
biological_process GO:0009791 post-embryonic development
biological_process GO:0007127 meiosis I
biological_process GO:0006310 DNA recombination
biological_process GO:0003006 developmental process involved in reproduction
biological_process GO:0007059 chromosome segregation
biological_process GO:0051276 chromosome organization
biological_process GO:0006974 cellular response to DNA damage stimulus
biological_process GO:0009653 anatomical structure morphogenesis
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0009086 methionine biosynthetic process
biological_process GO:0033043 regulation of organelle organization
biological_process GO:0009617 response to bacterium
biological_process GO:0009266 response to temperature stimulus
biological_process GO:0016558 protein import into peroxisome matrix
biological_process GO:0010351 lithium ion transport
biological_process GO:0006869 lipid transport
biological_process GO:0006891 intra-Golgi vesicle-mediated transport
biological_process GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway
biological_process GO:0006796 phosphate-containing compound metabolic process
biological_process GO:0015940 pantothenate biosynthetic process
biological_process GO:0070647 protein modification by small protein conjugation or removal
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006612 protein targeting to membrane
biological_process GO:0009867 jasmonic acid mediated signaling pathway
biological_process GO:0048481 plant ovule development
biological_process GO:0017148 negative regulation of translation
biological_process GO:0045892 negative regulation of transcription, DNA-templated
biological_process GO:0009910 negative regulation of flower development
biological_process GO:0031348 negative regulation of defense response
biological_process GO:0009556 microsporogenesis
biological_process GO:0000165 MAPK cascade
biological_process GO:0010076 maintenance of floral meristem identity
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0010582 floral meristem determinacy
biological_process GO:0022414 reproductive process
biological_process GO:0052543 callose deposition in cell wall
biological_process GO:0010310 regulation of hydrogen peroxide metabolic process
biological_process GO:0010363 regulation of plant-type hypersensitive response
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0051090 regulation of DNA-binding transcription factor activity
biological_process GO:0006417 regulation of translation
biological_process GO:0006464 cellular protein modification process
biological_process GO:0006768 biotin metabolic process
biological_process GO:0016567 protein ubiquitination
biological_process GO:0051260 protein homooligomerization
biological_process GO:0009103 lipopolysaccharide biosynthetic process
biological_process GO:0009245 lipid A biosynthetic process
biological_process GO:0009987 cellular process
biological_process GO:0030968 endoplasmic reticulum unfolded protein response
biological_process GO:0030488 tRNA methylation
biological_process GO:0010200 response to chitin
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009911 positive regulation of flower development
biological_process GO:0009734 auxin-activated signaling pathway
biological_process GO:0048573 photoperiodism, flowering
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0044262 cellular carbohydrate metabolic process
biological_process GO:0009408 response to heat
biological_process GO:0032880 regulation of protein localization
biological_process GO:0010304 PSII associated light-harvesting complex II catabolic process
biological_process GO:0006508 proteolysis
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0051301 cell division
biological_process GO:0010260 animal organ senescence
biological_process GO:0009410 response to xenobiotic stimulus
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0042908 xenobiotic transport
biological_process GO:0043090 amino acid import
biological_process GO:0030007 cellular potassium ion homeostasis
biological_process GO:0009723 response to ethylene
biological_process GO:0009817 defense response to fungus, incompatible interaction
biological_process GO:0000911 cytokinesis by cell plate formation
biological_process GO:0034976 response to endoplasmic reticulum stress
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0009627 systemic acquired resistance
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0008152 metabolic process
biological_process GO:0000226 microtubule cytoskeleton organization
biological_process GO:0009651 response to salt stress
biological_process GO:0007165 signal transduction
cellular_component GO:0005829 cytosol
cellular_component GO:0005737 cytoplasm
cellular_component GO:0009507 chloroplast
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0005875 microtubule associated complex
cellular_component GO:0031515 tRNA (m1A) methyltransferase complex
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0000325 plant-type vacuole
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005886 plasma membrane
molecular_function GO:0000900 translation repressor activity, mRNA regulatory element binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0005488 binding
molecular_function GO:0008568 microtubule-severing ATPase activity
molecular_function GO:0015035 protein disulfide oxidoreductase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0004176 ATP-dependent peptidase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0016429 tRNA (adenine-N1-)-methyltransferase activity
molecular_function GO:0051087 chaperone binding
molecular_function GO:0008281 sulfonylurea receptor activity
molecular_function GO:0008559 xenobiotic transmembrane transporting ATPase activity
molecular_function GO:0009029 tetraacyldisaccharide 4'-kinase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0004252 serine-type endopeptidase activity
molecular_function GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0043565 sequence-specific DNA binding
RNA-Seq Expression