Spo25990 (gene) | SpinachBase

Overview


Name	Spo25990
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	3-isopropylmalate dehydratase, small subunit
Location	chr6 : 41091319 .. 41092101 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACGGCCTCCGCTCCAACAACCTTCCGCACCTTCTCATCCTCAAACCCCAAAATCAACTCTCCCGCAAAACCCTCAATTGTTCCTCAAACCCCTTCATTTCTGAAACTGCGCGCCACCTATTCGACGAAATGCCGCACTCAATTCCTCACCACCAATTCACAATCCATCCGTCCACCGTCTTTAACACCGCTCAAATCCACCCCTTCCGACGCCTCCTTCGAACCCGCCACCGCATTCCACGGTCTATGCTATGTCGTCGGCGACAACATCGACACTGACCAAATCATCCCTGCTGAGTACCTTACTTTGGTCCCTTCAAACCCTGAAGAATACCAAAAACTTGGGTCATTTGCCCTAATTGGTTTACCCGGTTCGTACGAAGCTCGCTTCGTTGACAAAGATGAAATGAAAACAAAGTACTCAATCATCATTGCTGGTGCCAATTTCGGATGTGGGTCATCAAGAGAACATGCCCCAGTTGCTTTAGGTGCTGCTGGAACAAAAGCAGTGGTGGCTGAATCATATGCTAGAATCTTCTTTAGGAATTCTGTGTCAACTGGGGAAGTTTATCCATTGGAATCAGAGGTTAGGATTTGTGAAGAGTTTACTACTGGGGATGTGGCTACTGTTGAGCTAGGTGAGAGCAAGTTGATTAATCATACTACTGGAAAGGAGTATGTTTTAAAGTCTATTGGGGATGCTGGCCCTGTTATTGATGCTGGTGGGATTTTCGCTTATGCCCGAAAGGCTGGGATGATTGCAGCTGCAACCTCTTGA

mRNA sequence

ATGGCGACGGCCTCCGCTCCAACAACCTTCCGCACCTTCTCATCCTCAAACCCCAAAATCAACTCTCCCGCAAAACCCTCAATTGTTCCTCAAACCCCTTCATTTCTGAAACTGCGCGCCACCTATTCGACGAAATGCCGCACTCAATTCCTCACCACCAATTCACAATCCATCCGTCCACCGTCTTTAACACCGCTCAAATCCACCCCTTCCGACGCCTCCTTCGAACCCGCCACCGCATTCCACGGTCTATGCTATGTCGTCGGCGACAACATCGACACTGACCAAATCATCCCTGCTGAGTACCTTACTTTGGTCCCTTCAAACCCTGAAGAATACCAAAAACTTGGGTCATTTGCCCTAATTGGTTTACCCGGTTCGTACGAAGCTCGCTTCGTTGACAAAGATGAAATGAAAACAAAGTACTCAATCATCATTGCTGGTGCCAATTTCGGATGTGGGTCATCAAGAGAACATGCCCCAGTTGCTTTAGGTGCTGCTGGAACAAAAGCAGTGGTGGCTGAATCATATGCTAGAATCTTCTTTAGGAATTCTGTGTCAACTGGGGAAGTTTATCCATTGGAATCAGAGGTTAGGATTTGTGAAGAGTTTACTACTGGGGATGTGGCTACTGTTGAGCTAGGTGAGAGCAAGTTGATTAATCATACTACTGGAAAGGAGTATGTTTTAAAGTCTATTGGGGATGCTGGCCCTGTTATTGATGCTGGTGGGATTTTCGCTTATGCCCGAAAGGCTGGGATGATTGCAGCTGCAACCTCTTGA

Coding sequence (CDS)

ATGGCGACGGCCTCCGCTCCAACAACCTTCCGCACCTTCTCATCCTCAAACCCCAAAATCAACTCTCCCGCAAAACCCTCAATTGTTCCTCAAACCCCTTCATTTCTGAAACTGCGCGCCACCTATTCGACGAAATGCCGCACTCAATTCCTCACCACCAATTCACAATCCATCCGTCCACCGTCTTTAACACCGCTCAAATCCACCCCTTCCGACGCCTCCTTCGAACCCGCCACCGCATTCCACGGTCTATGCTATGTCGTCGGCGACAACATCGACACTGACCAAATCATCCCTGCTGAGTACCTTACTTTGGTCCCTTCAAACCCTGAAGAATACCAAAAACTTGGGTCATTTGCCCTAATTGGTTTACCCGGTTCGTACGAAGCTCGCTTCGTTGACAAAGATGAAATGAAAACAAAGTACTCAATCATCATTGCTGGTGCCAATTTCGGATGTGGGTCATCAAGAGAACATGCCCCAGTTGCTTTAGGTGCTGCTGGAACAAAAGCAGTGGTGGCTGAATCATATGCTAGAATCTTCTTTAGGAATTCTGTGTCAACTGGGGAAGTTTATCCATTGGAATCAGAGGTTAGGATTTGTGAAGAGTTTACTACTGGGGATGTGGCTACTGTTGAGCTAGGTGAGAGCAAGTTGATTAATCATACTACTGGAAAGGAGTATGTTTTAAAGTCTATTGGGGATGCTGGCCCTGTTATTGATGCTGGTGGGATTTTCGCTTATGCCCGAAAGGCTGGGATGATTGCAGCTGCAACCTCTTGA

Protein sequence

MATASAPTTFRTFSSSNPKINSPAKPSIVPQTPSFLKLRATYSTKCRTQFLTTNSQSIRPPSLTPLKSTPSDASFEPATAFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPEEYQKLGSFALIGLPGSYEARFVDKDEMKTKYSIIIAGANFGCGSSREHAPVALGAAGTKAVVAESYARIFFRNSVSTGEVYPLESEVRICEEFTTGDVATVELGESKLINHTTGKEYVLKSIGDAGPVIDAGGIFAYARKAGMIAAATS

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo25990.1	Spo25990.1	mRNA

Homology

[Close]

BLAST of Spo25990.1 vs. NCBI nr
Match: gi|902186515|gb|KNA10697.1| (hypothetical protein SOVF_141870 [Spinacia oleracea])

HSP 1 Score: 506.5 bits (1303), Expect = 2.700e-140
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 1

		  
Query: 1   MATASAPTTFRTFSSSNPKINSPAKPSIVPQTPSFLKLRATYSTKCRTQFLTTNSQSIRP 60
           MATASAPTTFRTFSSSNPKINSPAKPSIVPQTPSFLKLRATYSTKCRTQFLTTNSQSIRP
Sbjct: 1   MATASAPTTFRTFSSSNPKINSPAKPSIVPQTPSFLKLRATYSTKCRTQFLTTNSQSIRP 60

Query: 61  PSLTPLKSTPSDASFEPATAFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPEEYQKLGSFA 120
           PSLTPLKSTPSDASFEPATAFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPEEYQKLGSFA
Sbjct: 61  PSLTPLKSTPSDASFEPATAFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPEEYQKLGSFA 120

Query: 121 LIGLPGSYEARFVDKDEMKTKYSIIIAGANFGCGSSREHAPVALGAAGTKAVVAESYARI 180
           LIGLPGSYEARFVDKDEMKTKYSIIIAGANFGCGSSREHAPVALGAAGTKAVVAESYARI
Sbjct: 121 LIGLPGSYEARFVDKDEMKTKYSIIIAGANFGCGSSREHAPVALGAAGTKAVVAESYARI 180

Query: 181 FFRNSVSTGEVYPLESEVRICEEFTTGDVATVELGESKLINHTTGKEYVLKSIGDAGPVI 240
           FFRNSVSTGEVYPLESEVRICEEFTTGDVATVELGESKLINHTTGKEYVLKSIGDAGPVI
Sbjct: 181 FFRNSVSTGEVYPLESEVRICEEFTTGDVATVELGESKLINHTTGKEYVLKSIGDAGPVI 240

Query: 241 DAGGIFAYARKAGMIAAATS 261
           DAGGIFAYARKAGMIAAATS
Sbjct: 241 DAGGIFAYARKAGMIAAATS 260

[Close]

BLAST of Spo25990.1 vs. NCBI nr
Match: gi|731374676|ref|XP_010667034.1| (PREDICTED: 3-isopropylmalate dehydratase small subunit 3-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 408.7 bits (1049), Expect = 7.700e-111
Identity = 212/256 (82.81%), Postives = 227/256 (88.67%), Query Frame = 1

		  
Query: 5   SAPTTFRTFSSSNPKINSPAKPSIVPQTPSFLKLRATYSTKCRTQFLTTNSQSIRPPSLT 64
           +APTTF TFSSSNP      K SI P + SFLKL  TYSTKCRTQFLT NSQSIR P  +
Sbjct: 4   AAPTTFHTFSSSNPNFQ---KSSIPPASSSFLKLPTTYSTKCRTQFLTKNSQSIRSPCFS 63

Query: 65  PLKSTPSDASFEPATAFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPEEYQKLGSFALIGL 124
           P+K+TPS +S   A +FHGLCYVV DNIDTDQIIPAEYLTLVPSNPEEYQKLGS+ALIGL
Sbjct: 64  PIKATPSSSSSSTA-SFHGLCYVVDDNIDTDQIIPAEYLTLVPSNPEEYQKLGSYALIGL 123

Query: 125 PGSYEARFVDKDEMKTKYSIIIAGANFGCGSSREHAPVALGAAGTKAVVAESYARIFFRN 184
           P SY+ RF+D++E KTKYSIIIAGANFGCGSSREHAPVALGAAGTKA+VAESYARIFFRN
Sbjct: 124 PSSYQVRFIDENETKTKYSIIIAGANFGCGSSREHAPVALGAAGTKAIVAESYARIFFRN 183

Query: 185 SVSTGEVYPLESEVRICEEFTTGDVATVELGESKLINHTTGKEYVLKSIGDAGPVIDAGG 244
           SVSTGEVYPLESEVRICEEFTTGDVATVEL ESKLINHTTGKEY LKSIGDAGPVIDAGG
Sbjct: 184 SVSTGEVYPLESEVRICEEFTTGDVATVELAESKLINHTTGKEYTLKSIGDAGPVIDAGG 243

Query: 245 IFAYARKAGMIAAATS 261
           IFAYAR+AGMIA+A S
Sbjct: 244 IFAYARQAGMIASAAS 255

[Close]

BLAST of Spo25990.1 vs. NCBI nr
Match: gi|802582028|ref|XP_012070020.1| (PREDICTED: 3-isopropylmalate dehydratase small subunit 3-like [Jatropha curcas])

HSP 1 Score: 318.2 bits (814), Expect = 1.400e-83
Identity = 170/255 (66.67%), Postives = 198/255 (77.65%), Query Frame = 1

		  
Query: 1   MATASAPTTFRTFSSSNPKINSPAKPSIVPQTPSFLKLRATYSTKCRTQFLTTNSQSIRP 60
           MATA++  + +  +S    I+   KPS+   +P  +KL + +        LT+N++S+  
Sbjct: 1   MATAASTISLKPKASIATSIS---KPSLSFSSPRSIKLPSIHPHSTFKP-LTSNARSVLV 60

Query: 61  PSLTPLKSTPSDASFEPATAFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPEEYQKLGSFA 120
           P  T   +TPS  +   AT FHGLCYVVGDNIDTDQIIPAEYLTLVPSNP EY+KLGS+A
Sbjct: 61  PRST---ATPSSTTSTIATTFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPAEYEKLGSYA 120

Query: 121 LIGLPGSYEARFVDKDEMKTKYSIIIAGANFGCGSSREHAPVALGAAGTKAVVAESYARI 180
           LIGLP SYE RF++  E KTKYSI+I G NFGCGSSREHAPVALGAAG  AVVAESYARI
Sbjct: 121 LIGLPASYETRFIEPGETKTKYSIVIGGDNFGCGSSREHAPVALGAAGVAAVVAESYARI 180

Query: 181 FFRNSVSTGEVYPLESEVRICEEFTTGDVATVELGESKLINHTTGKEYVLKSIGDAGPVI 240
           FFRNSV+TGE+YPLESEVRICEE  TGDV T+EL E +LINHTTGKEY+LK IGDAGPVI
Sbjct: 181 FFRNSVATGEIYPLESEVRICEECKTGDVVTIELAEGRLINHTTGKEYILKPIGDAGPVI 240

Query: 241 DAGGIFAYARKAGMI 256
           +AGGIFAYARK GMI
Sbjct: 241 EAGGIFAYARKTGMI 248

[Close]

BLAST of Spo25990.1 vs. NCBI nr
Match: gi|823252271|ref|XP_012458761.1| (PREDICTED: 3-isopropylmalate dehydratase small subunit 3-like [Gossypium raimondii])

HSP 1 Score: 317.8 bits (813), Expect = 1.800e-83
Identity = 172/247 (69.64%), Postives = 193/247 (78.14%), Query Frame = 1

		  
Query: 12  TFSSSNPKINSPAKPSIVPQT---PSFLKLRATYSTKCRTQFLTTNSQSIRPPSLTPLKS 71
           TF+SS  K  + + PS+ P +   P+FL L         T      + +I P + +   S
Sbjct: 13  TFTSSASK-TTVSGPSLSPHSIKVPTFLPLTVKPLNSSFTPH-GARAITIAPHATSTPSS 72

Query: 72  TPSDASFEPATAFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPEEYQKLGSFALIGLPGSY 131
            PSD S    T FHGLCYVVGDNIDTDQIIPAEYLTLVPSNP+EY+KLGS+ALIGLP SY
Sbjct: 73  IPSDTS---TTTFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPSSY 132

Query: 132 EARFVDKDEMKTKYSIIIAGANFGCGSSREHAPVALGAAGTKAVVAESYARIFFRNSVST 191
             RF++ +E KTKYSI+I GANFGCGSSREHAPVALGAAG KAVVAESYARIFFRNSV+T
Sbjct: 133 ATRFIEPNETKTKYSIVIGGANFGCGSSREHAPVALGAAGAKAVVAESYARIFFRNSVAT 192

Query: 192 GEVYPLESEVRICEEFTTGDVATVELGESKLINHTTGKEYVLKSIGDAGPVIDAGGIFAY 251
           GEVYPLESEVRICEE  TGDV T+ELGES+LINHTTGKEY LK IGDAGPVI+AGGIFAY
Sbjct: 193 GEVYPLESEVRICEECRTGDVVTIELGESRLINHTTGKEYKLKPIGDAGPVIEAGGIFAY 252

Query: 252 ARKAGMI 256
           ARK GMI
Sbjct: 253 ARKTGMI 254

[Close]

BLAST of Spo25990.1 vs. NCBI nr
Match: gi|225469374|ref|XP_002263405.1| (PREDICTED: 3-isopropylmalate dehydratase small subunit 3 [Vitis vinifera])

HSP 1 Score: 316.6 bits (810), Expect = 4.000e-83
Identity = 169/255 (66.27%), Postives = 192/255 (75.29%), Query Frame = 1

		  
Query: 6   APTTFRTFSSSNPKINSPAKPSIVPQTPSFLKLRATYSTKCRTQFLTTNSQSIRPPSLTP 65
           A +T     S NP + S  KP       S L+     S K   + LTT   +    + + 
Sbjct: 2   AASTASAALSGNPNLTSSHKPHASLSPHSCLRFSTAISRKFPFKSLTTIPFTTATTAAST 61

Query: 66  LKSTPSDASFEPATAFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPEEYQKLGSFALIGLP 125
            +ST   AS   +T+FHGLCYVV DNIDTDQIIPAEYLTLVPSNP+EYQKLGS+A IGLP
Sbjct: 62  RRSTTVTAS---STSFHGLCYVVHDNIDTDQIIPAEYLTLVPSNPDEYQKLGSYAFIGLP 121

Query: 126 GSYEARFVDKDEMKTKYSIIIAGANFGCGSSREHAPVALGAAGTKAVVAESYARIFFRNS 185
            SYE RF++  E+KTKY+I+IAG NFGCGSSREHAPVALGAAG +AVVAESYARIFFRNS
Sbjct: 122 SSYETRFIEAGELKTKYTIVIAGQNFGCGSSREHAPVALGAAGARAVVAESYARIFFRNS 181

Query: 186 VSTGEVYPLESEVRICEEFTTGDVATVELGESKLINHTTGKEYVLKSIGDAGPVIDAGGI 245
           VSTGEVYPLE+EVRICEE  TGDV T+ELGESKLINHTTGKEY L  +GD GPVI+AGGI
Sbjct: 182 VSTGEVYPLETEVRICEECRTGDVVTIELGESKLINHTTGKEYKLNPVGDVGPVIEAGGI 241

Query: 246 FAYARKAGMIAAATS 261
           FAYARK GMI A T+
Sbjct: 242 FAYARKTGMIPAQTA 253

[Close]

BLAST of Spo25990.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QTT9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_141870 PE=4 SV=1)

HSP 1 Score: 506.5 bits (1303), Expect = 1.900e-140
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 1

		  
Query: 1   MATASAPTTFRTFSSSNPKINSPAKPSIVPQTPSFLKLRATYSTKCRTQFLTTNSQSIRP 60
           MATASAPTTFRTFSSSNPKINSPAKPSIVPQTPSFLKLRATYSTKCRTQFLTTNSQSIRP
Sbjct: 1   MATASAPTTFRTFSSSNPKINSPAKPSIVPQTPSFLKLRATYSTKCRTQFLTTNSQSIRP 60

Query: 61  PSLTPLKSTPSDASFEPATAFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPEEYQKLGSFA 120
           PSLTPLKSTPSDASFEPATAFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPEEYQKLGSFA
Sbjct: 61  PSLTPLKSTPSDASFEPATAFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPEEYQKLGSFA 120

Query: 121 LIGLPGSYEARFVDKDEMKTKYSIIIAGANFGCGSSREHAPVALGAAGTKAVVAESYARI 180
           LIGLPGSYEARFVDKDEMKTKYSIIIAGANFGCGSSREHAPVALGAAGTKAVVAESYARI
Sbjct: 121 LIGLPGSYEARFVDKDEMKTKYSIIIAGANFGCGSSREHAPVALGAAGTKAVVAESYARI 180

Query: 181 FFRNSVSTGEVYPLESEVRICEEFTTGDVATVELGESKLINHTTGKEYVLKSIGDAGPVI 240
           FFRNSVSTGEVYPLESEVRICEEFTTGDVATVELGESKLINHTTGKEYVLKSIGDAGPVI
Sbjct: 181 FFRNSVSTGEVYPLESEVRICEEFTTGDVATVELGESKLINHTTGKEYVLKSIGDAGPVI 240

Query: 241 DAGGIFAYARKAGMIAAATS 261
           DAGGIFAYARKAGMIAAATS
Sbjct: 241 DAGGIFAYARKAGMIAAATS 260

[Close]

BLAST of Spo25990.1 vs. UniProtKB/TrEMBL
Match: A0A0J8DXQ5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_006300 PE=4 SV=1)

HSP 1 Score: 408.7 bits (1049), Expect = 5.400e-111
Identity = 212/256 (82.81%), Postives = 227/256 (88.67%), Query Frame = 1

		  
Query: 5   SAPTTFRTFSSSNPKINSPAKPSIVPQTPSFLKLRATYSTKCRTQFLTTNSQSIRPPSLT 64
           +APTTF TFSSSNP      K SI P + SFLKL  TYSTKCRTQFLT NSQSIR P  +
Sbjct: 4   AAPTTFHTFSSSNPNFQ---KSSIPPASSSFLKLPTTYSTKCRTQFLTKNSQSIRSPCFS 63

Query: 65  PLKSTPSDASFEPATAFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPEEYQKLGSFALIGL 124
           P+K+TPS +S   A +FHGLCYVV DNIDTDQIIPAEYLTLVPSNPEEYQKLGS+ALIGL
Sbjct: 64  PIKATPSSSSSSTA-SFHGLCYVVDDNIDTDQIIPAEYLTLVPSNPEEYQKLGSYALIGL 123

Query: 125 PGSYEARFVDKDEMKTKYSIIIAGANFGCGSSREHAPVALGAAGTKAVVAESYARIFFRN 184
           P SY+ RF+D++E KTKYSIIIAGANFGCGSSREHAPVALGAAGTKA+VAESYARIFFRN
Sbjct: 124 PSSYQVRFIDENETKTKYSIIIAGANFGCGSSREHAPVALGAAGTKAIVAESYARIFFRN 183

Query: 185 SVSTGEVYPLESEVRICEEFTTGDVATVELGESKLINHTTGKEYVLKSIGDAGPVIDAGG 244
           SVSTGEVYPLESEVRICEEFTTGDVATVEL ESKLINHTTGKEY LKSIGDAGPVIDAGG
Sbjct: 184 SVSTGEVYPLESEVRICEEFTTGDVATVELAESKLINHTTGKEYTLKSIGDAGPVIDAGG 243

Query: 245 IFAYARKAGMIAAATS 261
           IFAYAR+AGMIA+A S
Sbjct: 244 IFAYARQAGMIASAAS 255

[Close]

BLAST of Spo25990.1 vs. UniProtKB/TrEMBL
Match: A0A067KUS4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03423 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 9.600e-84
Identity = 170/255 (66.67%), Postives = 198/255 (77.65%), Query Frame = 1

		  
Query: 1   MATASAPTTFRTFSSSNPKINSPAKPSIVPQTPSFLKLRATYSTKCRTQFLTTNSQSIRP 60
           MATA++  + +  +S    I+   KPS+   +P  +KL + +        LT+N++S+  
Sbjct: 1   MATAASTISLKPKASIATSIS---KPSLSFSSPRSIKLPSIHPHSTFKP-LTSNARSVLV 60

Query: 61  PSLTPLKSTPSDASFEPATAFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPEEYQKLGSFA 120
           P  T   +TPS  +   AT FHGLCYVVGDNIDTDQIIPAEYLTLVPSNP EY+KLGS+A
Sbjct: 61  PRST---ATPSSTTSTIATTFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPAEYEKLGSYA 120

Query: 121 LIGLPGSYEARFVDKDEMKTKYSIIIAGANFGCGSSREHAPVALGAAGTKAVVAESYARI 180
           LIGLP SYE RF++  E KTKYSI+I G NFGCGSSREHAPVALGAAG  AVVAESYARI
Sbjct: 121 LIGLPASYETRFIEPGETKTKYSIVIGGDNFGCGSSREHAPVALGAAGVAAVVAESYARI 180

Query: 181 FFRNSVSTGEVYPLESEVRICEEFTTGDVATVELGESKLINHTTGKEYVLKSIGDAGPVI 240
           FFRNSV+TGE+YPLESEVRICEE  TGDV T+EL E +LINHTTGKEY+LK IGDAGPVI
Sbjct: 181 FFRNSVATGEIYPLESEVRICEECKTGDVVTIELAEGRLINHTTGKEYILKPIGDAGPVI 240

Query: 241 DAGGIFAYARKAGMI 256
           +AGGIFAYARK GMI
Sbjct: 241 EAGGIFAYARKTGMI 248

[Close]

BLAST of Spo25990.1 vs. UniProtKB/TrEMBL
Match: A0A0D2V4U1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G137200 PE=4 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 1.200e-83
Identity = 172/247 (69.64%), Postives = 193/247 (78.14%), Query Frame = 1

		  
Query: 12  TFSSSNPKINSPAKPSIVPQT---PSFLKLRATYSTKCRTQFLTTNSQSIRPPSLTPLKS 71
           TF+SS  K  + + PS+ P +   P+FL L         T      + +I P + +   S
Sbjct: 13  TFTSSASK-TTVSGPSLSPHSIKVPTFLPLTVKPLNSSFTPH-GARAITIAPHATSTPSS 72

Query: 72  TPSDASFEPATAFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPEEYQKLGSFALIGLPGSY 131
            PSD S    T FHGLCYVVGDNIDTDQIIPAEYLTLVPSNP+EY+KLGS+ALIGLP SY
Sbjct: 73  IPSDTS---TTTFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPSSY 132

Query: 132 EARFVDKDEMKTKYSIIIAGANFGCGSSREHAPVALGAAGTKAVVAESYARIFFRNSVST 191
             RF++ +E KTKYSI+I GANFGCGSSREHAPVALGAAG KAVVAESYARIFFRNSV+T
Sbjct: 133 ATRFIEPNETKTKYSIVIGGANFGCGSSREHAPVALGAAGAKAVVAESYARIFFRNSVAT 192

Query: 192 GEVYPLESEVRICEEFTTGDVATVELGESKLINHTTGKEYVLKSIGDAGPVIDAGGIFAY 251
           GEVYPLESEVRICEE  TGDV T+ELGES+LINHTTGKEY LK IGDAGPVI+AGGIFAY
Sbjct: 193 GEVYPLESEVRICEECRTGDVVTIELGESRLINHTTGKEYKLKPIGDAGPVIEAGGIFAY 252

Query: 252 ARKAGMI 256
           ARK GMI
Sbjct: 253 ARKTGMI 254

[Close]

BLAST of Spo25990.1 vs. UniProtKB/TrEMBL
Match: A5B9M3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0551g00010 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 2.800e-83
Identity = 169/255 (66.27%), Postives = 192/255 (75.29%), Query Frame = 1

		  
Query: 6   APTTFRTFSSSNPKINSPAKPSIVPQTPSFLKLRATYSTKCRTQFLTTNSQSIRPPSLTP 65
           A +T     S NP + S  KP       S L+     S K   + LTT   +    + + 
Sbjct: 2   AASTASAALSGNPNLTSSHKPHASLSPHSCLRFSTAISRKFPFKSLTTIPFTTATTAAST 61

Query: 66  LKSTPSDASFEPATAFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPEEYQKLGSFALIGLP 125
            +ST   AS   +T+FHGLCYVV DNIDTDQIIPAEYLTLVPSNP+EYQKLGS+A IGLP
Sbjct: 62  RRSTTVTAS---STSFHGLCYVVHDNIDTDQIIPAEYLTLVPSNPDEYQKLGSYAFIGLP 121

Query: 126 GSYEARFVDKDEMKTKYSIIIAGANFGCGSSREHAPVALGAAGTKAVVAESYARIFFRNS 185
            SYE RF++  E+KTKY+I+IAG NFGCGSSREHAPVALGAAG +AVVAESYARIFFRNS
Sbjct: 122 SSYETRFIEAGELKTKYTIVIAGQNFGCGSSREHAPVALGAAGARAVVAESYARIFFRNS 181

Query: 186 VSTGEVYPLESEVRICEEFTTGDVATVELGESKLINHTTGKEYVLKSIGDAGPVIDAGGI 245
           VSTGEVYPLE+EVRICEE  TGDV T+ELGESKLINHTTGKEY L  +GD GPVI+AGGI
Sbjct: 182 VSTGEVYPLETEVRICEECRTGDVVTIELGESKLINHTTGKEYKLNPVGDVGPVIEAGGI 241

Query: 246 FAYARKAGMIAAATS 261
           FAYARK GMI A T+
Sbjct: 242 FAYARKTGMIPAQTA 253

[Close]

BLAST of Spo25990.1 vs. ExPASy Swiss-Prot
Match: LEUD3_ARATH (3-isopropylmalate dehydratase small subunit 3 OS=Arabidopsis thaliana GN=At2g43090 PE=1 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 1.800e-83
Identity = 176/263 (66.92%), Postives = 200/263 (76.05%), Query Frame = 1

		  
Query: 12  TFSSSNPKIN----SPAKPSIVPQTPSFLKLRATYSTKCRTQFLTTNSQSIRPPSLTPLK 71
           +  S+NP ++    SP KPS      SF    AT+    R+ FL  NS S+   +  PL 
Sbjct: 4   SLQSANPTLSRTLASPNKPS------SF----ATF----RSPFLRFNSTSVAS-NFKPLV 63

Query: 72  STPSDASFEPATA--------FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPEEYQKLGSF 131
           S  + +SF   +A        FHGLCYVVGDNIDTDQIIPAE+LTLVPSNPEEY+KLGS+
Sbjct: 64  SREASSSFVTRSAAEPQERKTFHGLCYVVGDNIDTDQIIPAEFLTLVPSNPEEYEKLGSY 123

Query: 132 ALIGLPGSYEARFVDKDEMKTKYSIIIAGANFGCGSSREHAPVALGAAGTKAVVAESYAR 191
           AL+GLP SY+ RFV   EMKTKYSIII G NFGCGSSREHAPV LGAAG KAVVA+SYAR
Sbjct: 124 ALVGLPASYKERFVQPGEMKTKYSIIIGGENFGCGSSREHAPVCLGAAGAKAVVAQSYAR 183

Query: 192 IFFRNSVSTGEVYPLESEVRICEEFTTGDVATVEL--GESKLINHTTGKEYVLKSIGDAG 251
           IFFRNSV+TGEVYPL+SEVR+C+E TTGDVATVEL  G+S LINHTTGKEY LK IGDAG
Sbjct: 184 IFFRNSVATGEVYPLDSEVRVCDECTTGDVATVELREGDSILINHTTGKEYKLKPIGDAG 243

Query: 252 PVIDAGGIFAYARKAGMIAAATS 261
           PVIDAGGIFAYARKAGMI +A +
Sbjct: 244 PVIDAGGIFAYARKAGMIPSAAA 251

[Close]

BLAST of Spo25990.1 vs. ExPASy Swiss-Prot
Match: LEUD2_ARATH (3-isopropylmalate dehydratase small subunit 2 OS=Arabidopsis thaliana GN=IPMI1 PE=1 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 5.400e-72
Identity = 159/257 (61.87%), Postives = 188/257 (73.15%), Query Frame = 1

		  
Query: 7   PTTFRTFSSSNPKINSPAKPSIVPQTPSFLKLRATYSTKCRTQFLTTNSQSIRPPSLTPL 66
           PT F++ +SSN       K S       FL+L++  ST    + LT++S +I    +T +
Sbjct: 10  PTLFKSLASSN-------KNSCTLCPSPFLQLKSA-STIFNYKPLTSSSATI----ITRV 69

Query: 67  KSTPSDASFEPAT--AFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPEEYQKLGSFALIGL 126
            ++ SD+  E  T   FHGLC+V+ DNIDTDQIIPAEY TL+PS PE+ +KLGSFAL GL
Sbjct: 70  AASSSDSG-ESITRETFHGLCFVLKDNIDTDQIIPAEYGTLIPSIPEDREKLGSFALNGL 129

Query: 127 PGSYEARFVDKDEMKTKYSIIIAGANFGCGSSREHAPVALGAAGTKAVVAESYARIFFRN 186
           P  Y  RFV   EMK+KYS+II G NFGCGSSREHAPV LGAAG KAVVAESYARIFFRN
Sbjct: 130 PKFYNERFVVPGEMKSKYSVIIGGDNFGCGSSREHAPVCLGAAGAKAVVAESYARIFFRN 189

Query: 187 SVSTGEVYPLESEVRICEEFTTGDVATVEL---GESKLINHTTGKEYVLKSIGDAGPVID 246
            V+TGE++PLESEVRIC+E  TGDV T+E    G S LINHTT KEY LK +GDAGPVID
Sbjct: 190 CVATGEIFPLESEVRICDECKTGDVVTIEHKEDGSSLLINHTTRKEYKLKPLGDAGPVID 249

Query: 247 AGGIFAYARKAGMIAAA 259
           AGGIFAYARKAGMI +A
Sbjct: 250 AGGIFAYARKAGMIPSA 253

[Close]

BLAST of Spo25990.1 vs. ExPASy Swiss-Prot
Match: LEUD1_ARATH (3-isopropylmalate dehydratase small subunit 1 OS=Arabidopsis thaliana GN=IPMI2 PE=1 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.700e-65
Identity = 138/248 (55.65%), Postives = 166/248 (66.94%), Query Frame = 1

		  
Query: 12  TFSSSNPKINSPAKPSIVPQTPSFLKLRATYSTKCRTQFLTTNSQSIRPPSLTPLKSTPS 71
           TF  + P  ++    S+      FL+     ST      ++  S+    P++ P  +   
Sbjct: 7   TFPQALPCSSTKTSSSLATFRSPFLRFNG--STSLIPSSISITSRGTSSPTIIPRAAASE 66

Query: 72  DASFEPA--TAFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPEEYQKLGSFALIGLPGSYE 131
             S E    T FHGLCYV+ DNIDTDQIIPA      PSN +E  ++ + AL GLP  ++
Sbjct: 67  SDSNEALANTTFHGLCYVLKDNIDTDQIIPAGAACTFPSNQQERDEIAAHALSGLPDFHK 126

Query: 132 ARFVDKDEMKTKYSIIIAGANFGCGSSREHAPVALGAAGTKAVVAESYARIFFRNSVSTG 191
            RF++  E ++KYSIII G NFGCGSSREHAPV LGAAG KA+VAESYARIFFRNSV+TG
Sbjct: 127 TRFIEPGENRSKYSIIIGGENFGCGSSREHAPVCLGAAGAKAIVAESYARIFFRNSVATG 186

Query: 192 EVYPLESEVRICEEFTTGDVATVELGES--KLINHTTGKEYVLKSIGDAGPVIDAGGIFA 251
           EV+PLESEVR+CEE  TGD  T+EL +S   L NHTTGK Y LKSIGDAGPVIDAGGIFA
Sbjct: 187 EVFPLESEVRVCEECKTGDTVTIELSDSGGLLTNHTTGKNYKLKSIGDAGPVIDAGGIFA 246

Query: 252 YARKAGMI 256
           YAR  GMI
Sbjct: 247 YARMMGMI 252

[Close]

BLAST of Spo25990.1 vs. ExPASy Swiss-Prot
Match: LEUD2_THEMA (3-isopropylmalate dehydratase small subunit 2 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=leuD2 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.900e-26
Identity = 74/171 (43.27%), Postives = 106/171 (61.99%), Query Frame = 1

		  
Query: 83  GLCYVVGDNIDTDQIIPAEYLTLVPSNPEEYQKLGSFALIGL-PGSYEARFVDKDEMKTK 142
           G  +V GDN++TD+IIPA YL     N  + Q+L  + +    PG     F  +D++K  
Sbjct: 7   GKVFVFGDNVNTDEIIPARYL-----NTSDPQELAKYCMEDARPG-----FGRRDDIKG- 66

Query: 143 YSIIIAGANFGCGSSREHAPVALGAAGTKAVVAESYARIFFRNSVSTGEVYPLESEVRIC 202
            SII+AG NFGCGSSREHAPVA+ AAG   V+A+S+ARIFFRN+++ G   P+  E++  
Sbjct: 67  -SIIVAGENFGCGSSREHAPVAIKAAGISCVIAKSFARIFFRNAINIG--LPI-VELKEA 126

Query: 203 EEFTTGDVATVELGESKLINHTTGKEYVLKSIGD-AGPVIDAGGIFAYARK 252
           +EF  GD+A V+L    + N T GKEY ++   +    +++AGG   Y  K
Sbjct: 127 DEFEEGDIAEVDLENGVVRNLTKGKEYRIRPYPEFLMKIMEAGGWLEYCLK 162

[Close]

BLAST of Spo25990.1 vs. ExPASy Swiss-Prot
Match: LEUD_THEYD (3-isopropylmalate dehydratase small subunit OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=leuD PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.500e-24
Identity = 70/170 (41.18%), Postives = 98/170 (57.65%), Query Frame = 1

		  
Query: 83  GLCYVVGDNIDTDQIIPAEYLTLVPSNPEEYQKLGSFALIGLPGSYEARFVDKDEMKTKY 142
           G  +  GDNIDTD IIPA YL    S+P+E   L    +     S+ ++    D      
Sbjct: 5   GKVWKFGDNIDTDAIIPARYLNT--SDPKE---LAKHVMEDADSSFPSKVKPGD------ 64

Query: 143 SIIIAGANFGCGSSREHAPVALGAAGTKAVVAESYARIFFRNSVSTGEVYPLESEVRICE 202
            IIIAG NFGCGSSREHAP+A+ A+G +AV+A+SYARIFFRN+ + G   P+     + +
Sbjct: 65  -IIIAGRNFGCGSSREHAPIAIKASGIRAVIAKSYARIFFRNAFNIG--LPIFEVPELID 124

Query: 203 EFTTGDVATVELGESKLINHTTGKEYVLKSIGD-AGPVIDAGGIFAYARK 252
           E   GD   +++   ++IN T GK+Y  K I      +I AGG+  + +K
Sbjct: 125 ETNEGDEVEIDMNSGQIINLTKGKKYNTKPIPPFMQELIKAGGLVEWTKK 160

[Close]

BLAST of Spo25990.1 vs. TAIR (Arabidopsis)
Match: AT2G43090.1 (Aconitase/3-isopropylmalate dehydratase protein)

HSP 1 Score: 310.5 bits (794), Expect = 1.000e-84
Identity = 176/263 (66.92%), Postives = 200/263 (76.05%), Query Frame = 1

		  
Query: 12  TFSSSNPKIN----SPAKPSIVPQTPSFLKLRATYSTKCRTQFLTTNSQSIRPPSLTPLK 71
           +  S+NP ++    SP KPS      SF    AT+    R+ FL  NS S+   +  PL 
Sbjct: 4   SLQSANPTLSRTLASPNKPS------SF----ATF----RSPFLRFNSTSVAS-NFKPLV 63

Query: 72  STPSDASFEPATA--------FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPEEYQKLGSF 131
           S  + +SF   +A        FHGLCYVVGDNIDTDQIIPAE+LTLVPSNPEEY+KLGS+
Sbjct: 64  SREASSSFVTRSAAEPQERKTFHGLCYVVGDNIDTDQIIPAEFLTLVPSNPEEYEKLGSY 123

Query: 132 ALIGLPGSYEARFVDKDEMKTKYSIIIAGANFGCGSSREHAPVALGAAGTKAVVAESYAR 191
           AL+GLP SY+ RFV   EMKTKYSIII G NFGCGSSREHAPV LGAAG KAVVA+SYAR
Sbjct: 124 ALVGLPASYKERFVQPGEMKTKYSIIIGGENFGCGSSREHAPVCLGAAGAKAVVAQSYAR 183

Query: 192 IFFRNSVSTGEVYPLESEVRICEEFTTGDVATVEL--GESKLINHTTGKEYVLKSIGDAG 251
           IFFRNSV+TGEVYPL+SEVR+C+E TTGDVATVEL  G+S LINHTTGKEY LK IGDAG
Sbjct: 184 IFFRNSVATGEVYPLDSEVRVCDECTTGDVATVELREGDSILINHTTGKEYKLKPIGDAG 243

Query: 252 PVIDAGGIFAYARKAGMIAAATS 261
           PVIDAGGIFAYARKAGMI +A +
Sbjct: 244 PVIDAGGIFAYARKAGMIPSAAA 251

[Close]

BLAST of Spo25990.1 vs. TAIR (Arabidopsis)
Match: AT3G58990.1 (isopropylmalate isomerase 1)

HSP 1 Score: 272.3 bits (695), Expect = 3.000e-73
Identity = 159/257 (61.87%), Postives = 188/257 (73.15%), Query Frame = 1

		  
Query: 7   PTTFRTFSSSNPKINSPAKPSIVPQTPSFLKLRATYSTKCRTQFLTTNSQSIRPPSLTPL 66
           PT F++ +SSN       K S       FL+L++  ST    + LT++S +I    +T +
Sbjct: 10  PTLFKSLASSN-------KNSCTLCPSPFLQLKSA-STIFNYKPLTSSSATI----ITRV 69

Query: 67  KSTPSDASFEPAT--AFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPEEYQKLGSFALIGL 126
            ++ SD+  E  T   FHGLC+V+ DNIDTDQIIPAEY TL+PS PE+ +KLGSFAL GL
Sbjct: 70  AASSSDSG-ESITRETFHGLCFVLKDNIDTDQIIPAEYGTLIPSIPEDREKLGSFALNGL 129

Query: 127 PGSYEARFVDKDEMKTKYSIIIAGANFGCGSSREHAPVALGAAGTKAVVAESYARIFFRN 186
           P  Y  RFV   EMK+KYS+II G NFGCGSSREHAPV LGAAG KAVVAESYARIFFRN
Sbjct: 130 PKFYNERFVVPGEMKSKYSVIIGGDNFGCGSSREHAPVCLGAAGAKAVVAESYARIFFRN 189

Query: 187 SVSTGEVYPLESEVRICEEFTTGDVATVEL---GESKLINHTTGKEYVLKSIGDAGPVID 246
            V+TGE++PLESEVRIC+E  TGDV T+E    G S LINHTT KEY LK +GDAGPVID
Sbjct: 190 CVATGEIFPLESEVRICDECKTGDVVTIEHKEDGSSLLINHTTRKEYKLKPLGDAGPVID 249

Query: 247 AGGIFAYARKAGMIAAA 259
           AGGIFAYARKAGMI +A
Sbjct: 250 AGGIFAYARKAGMIPSA 253

[Close]

BLAST of Spo25990.1 vs. TAIR (Arabidopsis)
Match: AT2G43100.1 (isopropylmalate isomerase 2)

HSP 1 Score: 250.8 bits (639), Expect = 9.500e-67
Identity = 138/248 (55.65%), Postives = 166/248 (66.94%), Query Frame = 1

		  
Query: 12  TFSSSNPKINSPAKPSIVPQTPSFLKLRATYSTKCRTQFLTTNSQSIRPPSLTPLKSTPS 71
           TF  + P  ++    S+      FL+     ST      ++  S+    P++ P  +   
Sbjct: 7   TFPQALPCSSTKTSSSLATFRSPFLRFNG--STSLIPSSISITSRGTSSPTIIPRAAASE 66

Query: 72  DASFEPA--TAFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPEEYQKLGSFALIGLPGSYE 131
             S E    T FHGLCYV+ DNIDTDQIIPA      PSN +E  ++ + AL GLP  ++
Sbjct: 67  SDSNEALANTTFHGLCYVLKDNIDTDQIIPAGAACTFPSNQQERDEIAAHALSGLPDFHK 126

Query: 132 ARFVDKDEMKTKYSIIIAGANFGCGSSREHAPVALGAAGTKAVVAESYARIFFRNSVSTG 191
            RF++  E ++KYSIII G NFGCGSSREHAPV LGAAG KA+VAESYARIFFRNSV+TG
Sbjct: 127 TRFIEPGENRSKYSIIIGGENFGCGSSREHAPVCLGAAGAKAIVAESYARIFFRNSVATG 186

Query: 192 EVYPLESEVRICEEFTTGDVATVELGES--KLINHTTGKEYVLKSIGDAGPVIDAGGIFA 251
           EV+PLESEVR+CEE  TGD  T+EL +S   L NHTTGK Y LKSIGDAGPVIDAGGIFA
Sbjct: 187 EVFPLESEVRVCEECKTGDTVTIELSDSGGLLTNHTTGKNYKLKSIGDAGPVIDAGGIFA 246

Query: 252 YARKAGMI 256
           YAR  GMI
Sbjct: 247 YARMMGMI 252

The following BLAST results are available for this feature:

BLAST of Spo25990.1 vs. NCBI nr
BLAST of Spo25990.1 vs. UniProtKB/TrEMBL
BLAST of Spo25990.1 vs. ExPASy Swiss-Prot
BLAST of Spo25990.1 vs. TAIR (Arabidopsis)

BLAST of Spo25990.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902186515\|gb\|KNA10697.1\|	2.7e-140	100.	hypothetical protein SOVF_1418...	[more]
gi\|731374676\|ref\|XP_010667034.1\|	7.7e-111	82.8	PREDICTED: 3-isopropylmalate d...	[more]
gi\|802582028\|ref\|XP_012070020.1\|	1.4e-83	66.6	PREDICTED: 3-isopropylmalate d...	[more]
gi\|823252271\|ref\|XP_012458761.1\|	1.8e-83	69.6	PREDICTED: 3-isopropylmalate d...	[more]
gi\|225469374\|ref\|XP_002263405.1\|	4.0e-83	66.2	PREDICTED: 3-isopropylmalate d...	[more]

BLAST of Spo25990.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
A0A0K9QTT9_SPIOL	1.9e-140	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8DXQ5_BETVU	5.4e-111	82.8	Uncharacterized protein OS=Bet...	[more]
A0A067KUS4_JATCU	9.6e-84	66.6	Uncharacterized protein OS=Jat...	[more]
A0A0D2V4U1_GOSRA	1.2e-83	69.6	Uncharacterized protein OS=Gos...	[more]
A5B9M3_VITVI	2.8e-83	66.2	Putative uncharacterized prote...	[more]

BLAST of Spo25990.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
LEUD3_ARATH	1.8e-83	66.9	3-isopropylmalate dehydratase ...	[more]
LEUD2_ARATH	5.4e-72	61.8	3-isopropylmalate dehydratase ...	[more]
LEUD1_ARATH	1.7e-65	55.6	3-isopropylmalate dehydratase ...	[more]
LEUD2_THEMA	5.9e-26	43.2	3-isopropylmalate dehydratase ...	[more]
LEUD_THEYD	2.5e-24	41.1	3-isopropylmalate dehydratase ...	[more]

BLAST of Spo25990.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3

Position :

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x 1


Match Name	E-value	Identity	Description
AT2G43090.1	1.0e-84	66.9	Aconitase/3-isopropylmalate de...	[more]
AT3G58990.1	3.0e-73	61.8	isopropylmalate isomerase 1	[more]
AT2G43100.1	9.5e-67	55.6	isopropylmalate isomerase 2	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000573	Aconitase A/isopropylmalate dehydratase small subunit, swivel domain	PFAM	PF00694	Aconitase_C	coord: 141..189 score: 3.4
IPR011827	Hydrolyase LeuD/HacB/DmdB	TIGRFAMs	TIGR02087	TIGR02087	coord: 85..251 score: 1.3
IPR015928	Aconitase/3-isopropylmalate dehydratase, swivel	GENE3D	3.20.19.10		coord: 74..223 score: 8.1
IPR015928	Aconitase/3-isopropylmalate dehydratase, swivel	unknown	SSF52016	LeuD/IlvD-like	coord: 78..256 score: 1.35
IPR015937	Aconitase/isopropylmalate dehydratase	PANTHER	PTHR11670	ACONITASE	coord: 76..257 score: 1.9
None	No IPR available	PANTHER	PTHR11670:SF6	3-ISOPROPYLMALATE DEHYDRATASE SMALL SUBUNIT 1-RELATED	coord: 76..257 score: 1.9

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048229	gametophyte development
biological_process	GO:0019761	glucosinolate biosynthetic process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0006165	nucleoside diphosphate phosphorylation
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0009585	red, far-red light phototransduction
biological_process	GO:0009411	response to UV
biological_process	GO:0006228	UTP biosynthetic process
biological_process	GO:0006096	glycolytic process
biological_process	GO:0010583	response to cyclopentenone
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0009086	methionine biosynthetic process
biological_process	GO:0006241	CTP biosynthetic process
biological_process	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation
biological_process	GO:0009308	amine metabolic process
biological_process	GO:0010731	protein glutathionylation
biological_process	GO:0019852	L-ascorbic acid metabolic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006749	glutathione metabolic process
biological_process	GO:0006914	autophagy
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0006448	regulation of translational elongation
biological_process	GO:0008152	metabolic process
biological_process	GO:0006183	GTP biosynthetic process
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0007030	Golgi organization
biological_process	GO:0006972	hyperosmotic response
biological_process	GO:0009097	isoleucine biosynthetic process
biological_process	GO:0009098	leucine biosynthetic process
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0009651	response to salt stress
biological_process	GO:0009266	response to temperature stimulus
biological_process	GO:0009099	valine biosynthetic process
biological_process	GO:0006833	water transport
biological_process	GO:0009636	response to toxic substance
biological_process	GO:0051604	protein maturation
biological_process	GO:0006508	proteolysis
biological_process	GO:0009407	toxin catabolic process
biological_process	GO:0010027	thylakoid membrane organization
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0016020	membrane
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0009840	chloroplastic endopeptidase Clp complex
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0044424	intracellular part
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005777	peroxisome
cellular_component	GO:0005829	cytosol
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009316	3-isopropylmalate dehydratase complex
molecular_function	GO:0045174	glutathione dehydrogenase (ascorbate) activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016836	hydro-lyase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0048038	quinone binding
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0004550	nucleoside diphosphate kinase activity
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003861	3-isopropylmalate dehydratase activity
molecular_function	GO:0004364	glutathione transferase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo25304	0.75	Barchart \| Table
Spo16436	0.74	Barchart \| Table
Spo05231	0.72	Barchart \| Table
Spo11336	0.69	Barchart \| Table
Spo09445	0.68	Barchart \| Table
Spo24944	0.68	Barchart \| Table
Spo11248	0.68	Barchart \| Table
Spo23152	0.67	Barchart \| Table
Spo00538	0.67	Barchart \| Table
Spo11235	0.67	Barchart \| Table
Spo11333	0.67	Barchart \| Table
Spo01967	0.67	Barchart \| Table
Spo24771	0.67	Barchart \| Table
Spo26368	0.66	Barchart \| Table
Spo00918	0.66	Barchart \| Table
Spo11682	0.66	Barchart \| Table
Spo15207	0.66	Barchart \| Table
Spo25655	0.66	Barchart \| Table