Spo26110 (gene)

Overview
NameSpo26110
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionRING-box protein
LocationSuper_scaffold_213 : 413928 .. 417294 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTAAGGACTGAGTAATGCCCTAATATAATATTACATTCAATCGGAATACGAAACGACAAAGAGGAGAGAGAGAGAGAGAGAAAGAGAAAGCGTCAATGGCAGCTACAGACGTGTCAACTTTTGTTCCCGCCGGCGAGGGTTCGAACGCTGCTGCTGGCCCATCTTCATCTTCCAAGAAACCGAAGCGTTTCGAAATCAAAAAGTGGAACGCCGTTTCTCTCTGGGCTTGGGGTAATCATTCTAATTAACCCCCAATTTTTGCTTCAAATATCTTCATAAACCCTAATTTTAATGTGTTGTTTCGGAGGATTTTCTACTGTTTTGTTGATTTTGGGGTCGGTTTTTGGCAGATATTGTGGTCGATAATTGCGCAATTTGTAGGAACCACATCATGGATCTCTGTGAGTTCTTTCTCAATTTTTTAGGGTAATTTTTTTGTAAGGTTTTTATGGTTGTTGTCGAGAATTGATTTGATTTGTTGATGTTGATTTTAAATAGGCATTGAGTGCCAAGCTAACCAGGCGAGTGCTACCAGTGAAGAGTGTACTGTTGCTTGGGGTATTATCTCTCTCCTATTTTTTTATTTTTATGAATTCCTCTTGGTTCCTGGTCCTTTTTTTCCCGCTAAAACTGAGCTTCAAACTAGATATCTTTAATCTAATTGAAGAAAGATTATGAGAATTTAGAATTTCGTTTGTTGCCAGATATGTTTTTATCGGCAGATAATTTTGAGTTTCCCATGTGTTTGATGGTGTGTGGTTTCGAATTGGCACTGTGTTTGTTGTCTATAGTAGACTGGTTTCTTGTTGTTAAGATGTAGAGAAATGTTCATTGGGGTTGATTGAATGTTTAGTAAGATGACATTTCCTAATATGTATACTACTTTAGATAACATTGTGATGTTGGAGGAATGAAAAGATGGATTATCCATGTATTAGCTCAGCTGGATGATTGGCAAGTTTGAGAGTTTGTTGGGTTTTTTTTTCTTACTAGAATTATTTTGACCTAGACAAATTAGGTGAATGAATGTAGCTTGGGAACTGCAACTCTGCTAGAGAGCTACACATCATAATTTGTGTGGCGAGCCTGTCAATAAAGCTATGAATGTAGCTTTTTTGATAAAATAGGAGAATATTTTCTTTGGATTTGATGTTTCAATAAGTCTTAACTGTTTCTTGTTGGAATTTGATGCTTTCCCGTTTCTGGTTACTGTGCTAACAAGGAAATTTTGGTGCTTCAACTGACCATTGGCTGATTATGGCGAAATAAATTACGTCATAAGAGTTTCCTGTTCTTGCTTCCCCCCTTAAAGTGTGTGAGCTTATGATCCTGGTTCCCAAATATGGAACCAGTAACTTTGACTAATAAGTAATAACGGGCTTTGGTGGTGGGTATGGTAGATTTTATTGCCAAAAATTCATTGGTCTTGTTAGGAATGGCGTGATGTCAAACTTGAAATTTCCATTTCCACAAGTTTAAAGGCTATTTTGTGTAAGGGCTGTGAACAAATGTTCTAAAAGGTGTGAGATATATTAAAGAAATAGGGGACCGAGCCTTGGGGGAGGAGGTCAGAGGCAAAGGATGCACACAGGTAATGTTGGATAGGCATGTAGTCCTTTATAGAATCCCACCGATCTTCCCTAACAATAGTCATAGAAGAATTAGAAACTTTAGACTCTTTTTCCAAAAATATTATTCTTTGTGTCCATGTAGGTCTATTTAAAGCAATGTTGCTAACTTGCGAATAGTTTGTGGCCAGTTAGCTAGTAGGCTTATAGCTATTTGCATTTAGACCTCTCCAGATCCTACTGTTGCTGGAGGATTGATATTGTACTGTAATACTTTCCTGTACTAATTTGTGTTTACAAAGGCCTGCTATGAGCATCAAATACCCTAAAATGCCTCAAATGTGTATGATTTCCTCACTATTACAACAGCCAAAACAAGTAAACCTAAATAACTGGAGATAAAGGAGCCCCTAAGGCGGGTCTTCCTTTTCACCTTGTAATGCAGTGCCTTAGGGGCTCCTTTTTGTGCAGTTATTTAGGTTTACTTGTTTTGGCTGTTGTAATAGTGAGGAAATCATATTTCCAGTTAAAATTAGGAATTATTGATATAGTTTTCACAGATACTTTGTATTAAACTTGTGATTTCTCGGCACACAGAACAAATTGCTTCTCAGTTTCTGAATTGCAGTATGAAATCTTACAGATTTCGGTTTCTTGGGTTCAATTAATTTAAAATGACACTCTGCTGCTACACTTTAGTTTTGTTAGATGTCATATCAACTCTTGGTTCCTGTTTTGTCACGTTTTTCCCTGGTTTAATGTTTGTCAACTTACTCATGTGTATCCAACATTTGCCTGGATAAAGTACTATTGTATCAGTTTGTGGCTGTAATATCTATCAGTTCTCATTTGGTATAATAATAATGCAGGAGTGTGCAATCATGCATTTCATTTCCACTGCATCAGCAGATGGCTGAAAACCCGTCAAGTTTGTCCTCTAGGTTCGTTTACTTACTGTTTCTGCAAACTATTTTATATCTGTTACTGCTATAATATTAATATCCCTGAATCTCGTTTTTAATTTGATTTACCAGACAACAGCGAGTGGGAGTTCCAGAAGTATGGCCATTAATTAGAAGAGCTGTAACCTTAGCTTGCTCATTGGAGTCCACAAAATTTGAGGGTGTGTGTGTGCAGATGTGTGGAGAGTGCCTACTTCTTTATTGTTTACAACTTTCTGTCGCATGACGTTAAAACTCAACTTACCAGTTTTAGGGTGTGAATTGTTGGGCATTGACAACCATTGCTACTTTCAGAGAGAAAGCTCTATCTTGTGACTCTTGTTCCATATTGCAGATATTTCATCTAAAATGCCCTCTTTATTACAATGGTTGTATATAAATTACTACAGTATGAAGCATGTCAACAAACTACTCTCTTGAGTTCCAACTTGTAAAGATGGCTGTGGGTTGGGCTTCGGGCCGATCCTGTGATTCGTGGGCCTAACTGGGCTGGGCCGAAAAGTTCAAAACCAGACCCAGACCAACAGCTTTCGGGCTGGGCCGGTCCATCGTGCCTAAGGCTAATTTTATTAAATTTAGTGTGCTTTGACGTGCTGTGTTTGGTCGTGTTTTTTCTAAAAATTTAAGGCCCATGTCTGGCCTTGGACTTCGTGCTTGTGCCGGGCCGTGTTTTTGTGCTTGTGCTGGGCTGGGCTTTTTTTGTGCAGGGTTGGGCTTCGGGCTTGCCCGGCCCACAGCCATCTTTACTCGTCCGTCATCAACATATTTTAATAACAGAGTAATTTTAGGACTAAGACACTGCATAAAGAACTTGTACAGAGTACTTTTAATAACTCC

mRNA sequence

CTAAGGACTGAGTAATGCCCTAATATAATATTACATTCAATCGGAATACGAAACGACAAAGAGGAGAGAGAGAGAGAGAGAAAGAGAAAGCGTCAATGGCAGCTACAGACGTGTCAACTTTTGTTCCCGCCGGCGAGGGTTCGAACGCTGCTGCTGGCCCATCTTCATCTTCCAAGAAACCGAAGCGTTTCGAAATCAAAAAGTGGAACGCCGTTTCTCTCTGGGCTTGGGATATTGTGGTCGATAATTGCGCAATTTGTAGGAACCACATCATGGATCTCTGCATTGAGTGCCAAGCTAACCAGGCGAGTGCTACCAGTGAAGAGTGTACTGTTGCTTGGGGAGTGTGCAATCATGCATTTCATTTCCACTGCATCAGCAGATGGCTGAAAACCCGTCAAGTTTGTCCTCTAGACAACAGCGAGTGGGAGTTCCAGAAGTATGGCCATTAATTAGAAGAGCTGTAACCTTAGCTTGCTCATTGGAGTCCACAAAATTTGAGGGTGTGTGTGTGCAGATGTGTGGAGAGTGCCTACTTCTTTATTGTTTACAACTTTCTGTCGCATGACGTTAAAACTCAACTTACCAGTTTTAGGGTGTGAATTGTTGGGCATTGACAACCATTGCTACTTTCAGAGAGAAAGCTCTATCTTGTGACTCTTGTTCCATATTGCAGATATTTCATCTAAAATGCCCTCTTTATTACAATGGTTGTATATAAATTACTACAGTATGAAGCATGTCAACAAACTACTCTCTTGAGTTCCAACTTGTAAAGATGGCTGTGGGTTGGGCTTCGGGCCGATCCTGTGATTCGTGGGCCTAACTGGGCTGGGCCGAAAAGTTCAAAACCAGACCCAGACCAACAGCTTTCGGGCTGGGCCGGTCCATCGTGCCTAAGGCTAATTTTATTAAATTTAGTGTGCTTTGACGTGCTGTGTTTGGTCGTGTTTTTTCTAAAAATTTAAGGCCCATGTCTGGCCTTGGACTTCGTGCTTGTGCCGGGCCGTGTTTTTGTGCTTGTGCTGGGCTGGGCTTTTTTTGTGCAGGGTTGGGCTTCGGGCTTGCCCGGCCCACAGCCATCTTTACTCGTCCGTCATCAACATATTTTAATAACAGAGTAATTTTAGGACTAAGACACTGCATAAAGAACTTGTACAGAGTACTTTTAATAACTCC

Coding sequence (CDS)

ATGGCAGCTACAGACGTGTCAACTTTTGTTCCCGCCGGCGAGGGTTCGAACGCTGCTGCTGGCCCATCTTCATCTTCCAAGAAACCGAAGCGTTTCGAAATCAAAAAGTGGAACGCCGTTTCTCTCTGGGCTTGGGATATTGTGGTCGATAATTGCGCAATTTGTAGGAACCACATCATGGATCTCTGCATTGAGTGCCAAGCTAACCAGGCGAGTGCTACCAGTGAAGAGTGTACTGTTGCTTGGGGAGTGTGCAATCATGCATTTCATTTCCACTGCATCAGCAGATGGCTGAAAACCCGTCAAGTTTGTCCTCTAGACAACAGCGAGTGGGAGTTCCAGAAGTATGGCCATTAA

Protein sequence

MAATDVSTFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo26110.1Spo26110.1mRNA


Homology
[Close]
BLAST of Spo26110.1 vs. NCBI nr
Match: gi|902213429|gb|KNA17269.1| (hypothetical protein SOVF_081510 [Spinacia oleracea])

HSP 1 Score: 257.7 bits (657), Expect = 1.000e-65
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 

		  

Query: 1   MAATDVSTFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIM 60
           MAATDVSTFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIM
Sbjct: 1   MAATDVSTFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
[Close]
BLAST of Spo26110.1 vs. NCBI nr
Match: gi|672144042|ref|XP_008795912.1| (PREDICTED: RING-box protein 1a [Phoenix dactylifera])

HSP 1 Score: 238.4 bits (607), Expect = 6.300e-60
Identity = 108/115 (93.91%), Postives = 112/115 (97.39%), Query Frame = 1 

		  

Query: 4   TDVSTFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLC 63
           TD++  VPAGEGS+ AAGPSSSSKKPKRFEIKKWNAV+LWAWDIVVDNCAICRNHIMDLC
Sbjct: 6   TDIN-MVPAGEGSSGAAGPSSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 65

Query: 64  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 66  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
[Close]
BLAST of Spo26110.1 vs. NCBI nr
Match: gi|743838517|ref|XP_010936721.1| (PREDICTED: RING-box protein 1a-like [Elaeis guineensis])

HSP 1 Score: 236.9 bits (603), Expect = 1.800e-59
Identity = 107/115 (93.04%), Postives = 111/115 (96.52%), Query Frame = 1 

		  

Query: 4   TDVSTFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLC 63
           TD++  VP GEGS+ AAGPSSSSKKPKRFEIKKWNAV+LWAWDIVVDNCAICRNHIMDLC
Sbjct: 6   TDIN-MVPVGEGSSGAAGPSSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 65

Query: 64  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 66  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
[Close]
BLAST of Spo26110.1 vs. NCBI nr
Match: gi|672118517|ref|XP_008782469.1| (PREDICTED: RING-box protein 1a-like [Phoenix dactylifera])

HSP 1 Score: 236.5 bits (602), Expect = 2.400e-59
Identity = 107/115 (93.04%), Postives = 111/115 (96.52%), Query Frame = 1 

		  

Query: 4   TDVSTFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLC 63
           TD++  VP GEGS+ AAGPSSSSKKPKRFEIKKWNAV+LWAWDIVVDNCAICRNHIMDLC
Sbjct: 6   TDIN-MVPIGEGSSGAAGPSSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 65

Query: 64  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 66  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
[Close]
BLAST of Spo26110.1 vs. NCBI nr
Match: gi|338227614|gb|AEI90836.1| (RBX1 [Hevea brasiliensis])

HSP 1 Score: 236.1 bits (601), Expect = 3.100e-59
Identity = 107/115 (93.04%), Postives = 111/115 (96.52%), Query Frame = 1 

		  

Query: 4   TDVSTFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLC 63
           TDV T VPAGE S++ AGPSSS+KKPKRFEIKKWNAV+LWAWDIVVDNCAICRNHIMDLC
Sbjct: 3   TDV-TMVPAGEASSSVAGPSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 62

Query: 64  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 63  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 116
[Close]
BLAST of Spo26110.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RE64_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_081510 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 7.000e-66
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 

		  

Query: 1   MAATDVSTFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIM 60
           MAATDVSTFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIM
Sbjct: 1   MAATDVSTFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
[Close]
BLAST of Spo26110.1 vs. UniProtKB/TrEMBL
Match: G0WRD1_HEVBR (RBX1 OS=Hevea brasiliensis PE=2 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.200e-59
Identity = 107/115 (93.04%), Postives = 111/115 (96.52%), Query Frame = 1 

		  

Query: 4   TDVSTFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLC 63
           TDV T VPAGE S++ AGPSSS+KKPKRFEIKKWNAV+LWAWDIVVDNCAICRNHIMDLC
Sbjct: 3   TDV-TMVPAGEASSSVAGPSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 62

Query: 64  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 63  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 116
[Close]
BLAST of Spo26110.1 vs. UniProtKB/TrEMBL
Match: A9NMC5_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 6.300e-59
Identity = 107/119 (89.92%), Postives = 114/119 (95.80%), Query Frame = 1 

		  

Query: 1   MAATDVS-TFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHI 60
           MA+TD+  T VP+GEGS+A AGPS+S+KK KRFEIKKWNAV+LWAWDIVVDNCAICRNHI
Sbjct: 1   MASTDIDMTPVPSGEGSSAQAGPSTSTKKAKRFEIKKWNAVALWAWDIVVDNCAICRNHI 60

Query: 61  MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
[Close]
BLAST of Spo26110.1 vs. UniProtKB/TrEMBL
Match: M0T5G4_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.400e-58
Identity = 108/119 (90.76%), Postives = 113/119 (94.96%), Query Frame = 1 

		  

Query: 4   TDVSTFVPAGEGSNAAAGPS----SSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHI 63
           TD++  VPAGEGS++AAGPS    SSSKKPKRFEIKKWNAV+LWAWDIVVDNCAICRNHI
Sbjct: 6   TDINV-VPAGEGSSSAAGPSATASSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHI 65

Query: 64  MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 66  MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 123
[Close]
BLAST of Spo26110.1 vs. UniProtKB/TrEMBL
Match: A0A022QK43_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016386mg PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 7.000e-58
Identity = 109/121 (90.08%), Postives = 111/121 (91.74%), Query Frame = 1 

		  

Query: 2   AATDVSTFVPAGEGSNAAA----GPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRN 61
           A TDV T VPAGEGS+ A      P+SSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRN
Sbjct: 4   ADTDV-TMVPAGEGSSGAGPSNTNPTSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRN 63

Query: 62  HIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 119
           HIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG
Sbjct: 64  HIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 123
[Close]
BLAST of Spo26110.1 vs. ExPASy Swiss-Prot
Match: RBX1A_ARATH (RING-box protein 1a OS=Arabidopsis thaliana GN=RBX1A PE=1 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.400e-56
Identity = 99/111 (89.19%), Postives = 105/111 (94.59%), Query Frame = 1 

		  

Query: 8   TFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQ 67
           T +PAGE S++ A  SSS+KK KRFEIKKW+AV+LWAWDIVVDNCAICRNHIMDLCIECQ
Sbjct: 9   TMIPAGEASSSVAA-SSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQ 68

Query: 68  ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 69  ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
[Close]
BLAST of Spo26110.1 vs. ExPASy Swiss-Prot
Match: RBX1A_DROME (RING-box protein 1A OS=Drosophila melanogaster GN=Roc1a PE=1 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 2.800e-52
Identity = 91/98 (92.86%), Postives = 94/98 (95.92%), Query Frame = 1 

		  

Query: 22  PSSSSK-KPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 81
           PSSSSK   KRFE+KKWNAV+LWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV
Sbjct: 11  PSSSSKGDKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 70

Query: 82  AWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           AWGVCNHAFHFHCISRWLKTRQVCPLDN EW+FQKYGH
Sbjct: 71  AWGVCNHAFHFHCISRWLKTRQVCPLDNREWDFQKYGH 108
[Close]
BLAST of Spo26110.1 vs. ExPASy Swiss-Prot
Match: RBX1B_ARATH (RING-box protein 1b OS=Arabidopsis thaliana GN=RBX1B PE=2 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 8.200e-52
Identity = 92/106 (86.79%), Postives = 97/106 (91.51%), Query Frame = 1 

		  

Query: 13  GEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQAS 72
           GE S+ +  PSSSSK  KRFE+KKW+AV+LWAWDIVVDNCAICRNHIMDLCIEC ANQAS
Sbjct: 11  GESSSISV-PSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHIMDLCIECLANQAS 70

Query: 73  ATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           ATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD  EWEFQKYGH
Sbjct: 71  ATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDVCEWEFQKYGH 115
[Close]
BLAST of Spo26110.1 vs. ExPASy Swiss-Prot
Match: RBX1_MOUSE (E3 ubiquitin-protein ligase RBX1 OS=Mus musculus GN=Rbx1 PE=1 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.100e-51
Identity = 95/117 (81.20%), Postives = 99/117 (84.62%), Query Frame = 1 

		  

Query: 2   AATDVSTFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMD 61
           AA DV T      G+N+ AG        KRFE+KKWNAV+LWAWDIVVDNCAICRNHIMD
Sbjct: 3   AAMDVDT----PSGTNSGAGK-------KRFEVKKWNAVALWAWDIVVDNCAICRNHIMD 62

Query: 62  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct: 63  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108
[Close]
BLAST of Spo26110.1 vs. ExPASy Swiss-Prot
Match: RBX1_HUMAN (E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens GN=RBX1 PE=1 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.100e-51
Identity = 95/117 (81.20%), Postives = 99/117 (84.62%), Query Frame = 1 

		  

Query: 2   AATDVSTFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMD 61
           AA DV T      G+N+ AG        KRFE+KKWNAV+LWAWDIVVDNCAICRNHIMD
Sbjct: 3   AAMDVDT----PSGTNSGAGK-------KRFEVKKWNAVALWAWDIVVDNCAICRNHIMD 62

Query: 62  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct: 63  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108
[Close]
BLAST of Spo26110.1 vs. TAIR (Arabidopsis)
Match: AT3G42830.1 (RING/U-box superfamily protein)

HSP 1 Score: 204.1 bits (518), Expect = 4.600e-53
Identity = 92/106 (86.79%), Postives = 97/106 (91.51%), Query Frame = 1 

		  

Query: 13  GEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQAS 72
           GE S+ +  PSSSSK  KRFE+KKW+AV+LWAWDIVVDNCAICRNHIMDLCIEC ANQAS
Sbjct: 11  GESSSISV-PSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHIMDLCIECLANQAS 70

Query: 73  ATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           ATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD  EWEFQKYGH
Sbjct: 71  ATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDVCEWEFQKYGH 115
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BLAST of Spo26110.1 vs. TAIR (Arabidopsis)
Match: AT5G20570.2 (RING-box 1)

HSP 1 Score: 197.2 bits (500), Expect = 5.600e-51
Identity = 97/135 (71.85%), Postives = 103/135 (76.30%), Query Frame = 1 

		  

Query: 8   TFVPAGEGSNAAAGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQ 67
           T +PAGE S++ A  SSS+KK KRFEIKKW+AV+LWAWDIVVDNCAICRNHIMDLCIECQ
Sbjct: 9   TMIPAGEASSSVAA-SSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQ 68

Query: 68  ANQASATSEECTVAW----GVCN--------------------HAFHFHCISRWLKTRQV 119
           ANQASATSEECTVAW      CN                    HAFHFHCISRWLKTRQV
Sbjct: 69  ANQASATSEECTVAWEDDQNNCNKYFCILDCSMKDDHLEGVCNHAFHFHCISRWLKTRQV 128
[Close]
BLAST of Spo26110.1 vs. TAIR (Arabidopsis)
Match: AT3G05870.1 (anaphase-promoting complex/cyclosome 11)

HSP 1 Score: 80.5 bits (197), Expect = 7.700e-16
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 1 

		  

Query: 28  KPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNH 87
           K K   I  W+AV+ W WD   + C ICR      C +C+        ++C + WG CNH
Sbjct: 2   KVKILRILLWHAVASWTWDAQDETCGICRMAFDGCCPDCKL-----PGDDCPLIWGACNH 61

Query: 88  AFHFHCISRWL--KTRQV-CPLDNSEWEFQK 116
           AFH HCI +W+  +T Q  CP+   EW+F++
Sbjct: 62  AFHLHCILKWVNSQTSQAHCPMCRREWQFKE 87
The following BLAST results are available for this feature:
BLAST of Spo26110.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902213429|gb|KNA17269.1|1.0e-65100.hypothetical protein SOVF_0815... [more]
gi|672144042|ref|XP_008795912.1|6.3e-6093.9PREDICTED: RING-box protein 1a... [more]
gi|743838517|ref|XP_010936721.1|1.8e-5993.0PREDICTED: RING-box protein 1a... [more]
gi|672118517|ref|XP_008782469.1|2.4e-5993.0PREDICTED: RING-box protein 1a... [more]
gi|338227614|gb|AEI90836.1|3.1e-5993.0RBX1 [Hevea brasiliensis][more]
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BLAST of Spo26110.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RE64_SPIOL7.0e-66100.Uncharacterized protein OS=Spi... [more]
G0WRD1_HEVBR2.2e-5993.0RBX1 OS=Hevea brasiliensis PE=... [more]
A9NMC5_PICSI6.3e-5989.9Putative uncharacterized prote... [more]
M0T5G4_MUSAM2.4e-5890.7Uncharacterized protein OS=Mus... [more]
A0A022QK43_ERYGU7.0e-5890.0Uncharacterized protein OS=Ery... [more]
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BLAST of Spo26110.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RBX1A_ARATH1.4e-5689.1RING-box protein 1a OS=Arabido... [more]
RBX1A_DROME2.8e-5292.8RING-box protein 1A OS=Drosoph... [more]
RBX1B_ARATH8.2e-5286.7RING-box protein 1b OS=Arabido... [more]
RBX1_MOUSE1.1e-5181.2E3 ubiquitin-protein ligase RB... [more]
RBX1_HUMAN1.1e-5181.2E3 ubiquitin-protein ligase RB... [more]
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BLAST of Spo26110.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT3G42830.14.6e-5386.7RING/U-box superfamily protein[more]
AT5G20570.25.6e-5171.8RING-box 1[more]
AT3G05870.17.7e-1638.4anaphase-promoting complex/cyc... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 63..108
score: 9
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 30..117
score: 1.8
IPR024766Zinc finger, RING-H2-typePFAMPF12678zf-rbx1coord: 50..108
score: 2.6
NoneNo IPR availablePANTHERPTHR11210RING BOXcoord: 3..118
score: 1.1
NoneNo IPR availablePANTHERPTHR11210:SF26SUBFAMILY NOT NAMEDcoord: 3..118
score: 1.1
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 30..115
score: 2.65

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006457 protein folding
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0009396 folic acid-containing compound biosynthetic process
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006412 translation
biological_process GO:0001731 formation of translation preinitiation complex
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
cellular_component GO:0005730 nucleolus
cellular_component GO:0005665 DNA-directed RNA polymerase II, core complex
cellular_component GO:0016282 eukaryotic 43S preinitiation complex
cellular_component GO:0033290 eukaryotic 48S preinitiation complex
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0005515 protein binding
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity
molecular_function GO:0004477 methenyltetrahydrofolate cyclohydrolase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0019904 protein domain specific binding
molecular_function GO:0031369 translation initiation factor binding
RNA-Seq Expression