Spo26117 (gene)

Overview
NameSpo26117
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_02724 : 5711 .. 6291 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GATGCACATGCCCCAATTGAATTGGATTGTGAGAAGAGTCGAATCATTTGAACCAAAAAGAAGTAAACCCACGTTTTTCAACTCCATCCACAAAATAAATACGGAGTAAATAAATAAAAATAAGCAAGAGAAAAAGAAAAACTTCTGCACACTCCCACTGCGAAACTCAACCATCGCTCCCCTATGCACCATTGCCTTCAACTGTGTTGGCCACCACCAAACCTTCCTCTCCGTCGATCTCTCTGCTCCCTTCAATCAATTTTCTGCTCTCCTGTGATTCTCCTCCTCATCGCTTCTCATTCTCTCCTCTCCTGTGCAGCTTGTTGGTTTATAAATTCAATTATTCTTGGCTTGGAGTTTCACTGATTTCCTCTTCTTCTTTTTTATTGATTAATTGCAATTATTTGATTTTATTTTTGCAGTTGTTTTTGTTGAAAACTACGGAGTATGCAGCTTGTTGTACTTATATTATGGATCTATGTGAGTTTAAATTTGCAAATTTTGTGGGTTTATGATTTAGGGATTTAACTGGTTGATTCGATTTTTATTGTTTCTACTTGATTTTCTAATTCAGGTATTAA

mRNA sequence

GATGCACATGCCCCAATTGAATTGGATTGTGAGAAGAGTCGAATCATTTGAACCAAAAAGAAGTAAACCCACGTTTTTCAACTCCATCCACAAAATAAATACGGAGTAAATAAATAAAAATAAGCAAGAGAAAAAGAAAAACTTCTGCACACTCCCACTGCGAAACTCAACCATCGCTCCCCTATGCACCATTGCCTTCAACTGTGTTGGCCACCACCAAACCTTCCTCTCCGTCGATCTCTCTGCTCCCTTCAATCAATTTTCTGCTCTCCTGTGATTCTCCTCCTCATCGCTTCTCATTCTCTCCTCTCCTGTGCAGCTTTTGTTTTTGTTGAAAACTACGGAGTATGCAGCTTGTTGTACTTATATTATGGATCTATGTATTAA

Coding sequence (CDS)

ATGCACCATTGCCTTCAACTGTGTTGGCCACCACCAAACCTTCCTCTCCGTCGATCTCTCTGCTCCCTTCAATCAATTTTCTGCTCTCCTGTGATTCTCCTCCTCATCGCTTCTCATTCTCTCCTCTCCTGTGCAGCTTTTGTTTTTGTTGAAAACTACGGAGTATGCAGCTTGTTGTACTTATATTATGGATCTATGTATTAA

Protein sequence

MHHCLQLCWPPPNLPLRRSLCSLQSIFCSPVILLLIASHSLLSCAAFVFVENYGVCSLLYLYYGSMY
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo26117.1Spo26117.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo26117.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo26117.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo26117.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo26117.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016311 dephosphorylation
biological_process GO:0007030 Golgi organization
biological_process GO:0006771 riboflavin metabolic process
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0015996 chlorophyll catabolic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0007033 vacuole organization
biological_process GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0000902 cell morphogenesis
biological_process GO:0009657 plastid organization
biological_process GO:0016049 cell growth
biological_process GO:0045892 negative regulation of transcription, DNA-templated
biological_process GO:0042432 indole biosynthetic process
biological_process GO:0016114 terpenoid biosynthetic process
biological_process GO:0006123 mitochondrial electron transport, cytochrome c to oxygen
biological_process GO:0009744 response to sucrose
biological_process GO:0009749 response to glucose
biological_process GO:0009750 response to fructose
biological_process GO:0009723 response to ethylene
biological_process GO:0009755 hormone-mediated signaling pathway
biological_process GO:0006007 glucose catabolic process
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0010264 myo-inositol hexakisphosphate biosynthetic process
biological_process GO:0009555 pollen development
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0010207 photosystem II assembly
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0006364 rRNA processing
biological_process GO:0010114 response to red light
biological_process GO:0009644 response to high light intensity
biological_process GO:0010218 response to far red light
biological_process GO:0009637 response to blue light
biological_process GO:0010155 regulation of proton transport
biological_process GO:0006655 phosphatidylglycerol biosynthetic process
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0030154 cell differentiation
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:0010206 photosystem II repair
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0007017 microtubule-based process
biological_process GO:0009086 methionine biosynthetic process
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0019497 hexachlorocyclohexane metabolic process
biological_process GO:0030244 cellulose biosynthetic process
biological_process GO:0042744 hydrogen peroxide catabolic process
biological_process GO:0009939 positive regulation of gibberellic acid mediated signaling pathway
biological_process GO:0008152 metabolic process
biological_process GO:1901575 organic substance catabolic process
biological_process GO:0050790 regulation of catalytic activity
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0046500 S-adenosylmethionine metabolic process
biological_process GO:0006479 protein methylation
biological_process GO:0030001 metal ion transport
biological_process GO:0048444 floral organ morphogenesis
biological_process GO:0042538 hyperosmotic salinity response
biological_process GO:0009867 jasmonic acid mediated signaling pathway
biological_process GO:0006090 pyruvate metabolic process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process GO:0010325 raffinose family oligosaccharide biosynthetic process
biological_process GO:0009737 response to abscisic acid
biological_process GO:0042255 ribosome assembly
biological_process GO:0009863 salicylic acid mediated signaling pathway
biological_process GO:0010162 seed dormancy process
biological_process GO:0009853 photorespiration
biological_process GO:0009845 seed germination
biological_process GO:0009987 cellular process
biological_process GO:0044262 cellular carbohydrate metabolic process
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:1901576 organic substance biosynthetic process
biological_process GO:0042430 indole-containing compound metabolic process
biological_process GO:0006591 ornithine metabolic process
biological_process GO:0046777 protein autophosphorylation
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0006468 protein phosphorylation
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0000105 histidine biosynthetic process
biological_process GO:0009058 biosynthetic process
biological_process GO:0006164 purine nucleotide biosynthetic process
biological_process GO:0006560 proline metabolic process
biological_process GO:0050896 response to stimulus
biological_process GO:0048481 plant ovule development
biological_process GO:0006526 arginine biosynthetic process
biological_process GO:0019752 carboxylic acid metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009056 catabolic process
biological_process GO:0015979 photosynthesis
biological_process GO:0044249 cellular biosynthetic process
biological_process GO:0006662 glycerol ether metabolic process
biological_process GO:0009773 photosynthetic electron transport in photosystem I
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0045277 respiratory chain complex IV
cellular_component GO:0009505 plant-type cell wall
cellular_component GO:0005746 mitochondrial respiratory chain
cellular_component GO:0005840 ribosome
cellular_component GO:0009579 thylakoid
cellular_component GO:0044434 chloroplast part
cellular_component GO:0019005 SCF ubiquitin ligase complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0010319 stromule
cellular_component GO:0044425 membrane part
cellular_component GO:0009523 photosystem II
cellular_component GO:0009348 ornithine carbamoyltransferase complex
cellular_component GO:0009507 chloroplast
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005829 cytosol
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005622 intracellular
cellular_component GO:0031977 thylakoid lumen
cellular_component GO:0009506 plasmodesma
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005835 fatty acid synthase complex
cellular_component GO:0044464 cell part
cellular_component GO:0005875 microtubule associated complex
cellular_component GO:0005886 plasma membrane
cellular_component GO:0000502 proteasome complex
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005634 nucleus
cellular_component GO:0005747 mitochondrial respiratory chain complex I
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0030234 enzyme regulator activity
molecular_function GO:0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity
molecular_function GO:0031072 heat shock protein binding
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016746 transferase activity, transferring acyl groups
molecular_function GO:0005543 phospholipid binding
molecular_function GO:0004462 lactoylglutathione lyase activity
molecular_function GO:0015035 protein disulfide oxidoreductase activity
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0051537 2 iron, 2 sulfur cluster binding
molecular_function GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
molecular_function GO:0004316 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity
molecular_function GO:0003993 acid phosphatase activity
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0016829 lyase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0004535 poly(A)-specific ribonuclease activity
molecular_function GO:0016866 intramolecular transferase activity
molecular_function GO:0008430 selenium binding
molecular_function GO:0010181 FMN binding
molecular_function GO:0016844 strictosidine synthase activity
molecular_function GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
molecular_function GO:0004424 imidazoleglycerol-phosphate dehydratase activity
molecular_function GO:0004585 ornithine carbamoyltransferase activity
molecular_function GO:0016597 amino acid binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0004129 cytochrome-c oxidase activity
molecular_function GO:0051287 NAD binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo146780.80Barchart | Table
Spo208690.77Barchart | Table
Spo050730.77Barchart | Table
Spo251590.76Barchart | Table
Spo025730.76Barchart | Table
Spo029320.76Barchart | Table
Spo280580.75Barchart | Table
Spo205440.74Barchart | Table
Spo185020.73Barchart | Table
Spo213830.73Barchart | Table
Spo046530.73Barchart | Table
Spo201520.72Barchart | Table
Spo054310.72Barchart | Table
Spo240460.72Barchart | Table
Spo102350.72Barchart | Table
Spo142250.72Barchart | Table
Spo181710.71Barchart | Table
Spo093350.71Barchart | Table
Spo104040.71Barchart | Table
Spo162130.71Barchart | Table
Spo062930.70Barchart | Table
Spo143420.70Barchart | Table
Spo260450.70Barchart | Table
Spo060040.70Barchart | Table
Spo228110.70Barchart | Table
Spo205210.70Barchart | Table
Spo239070.69Barchart | Table
Spo211550.69Barchart | Table
Spo092020.69Barchart | Table
Spo248570.69Barchart | Table
Spo043830.69Barchart | Table
Spo270810.69Barchart | Table
Spo037570.69Barchart | Table
Spo222610.69Barchart | Table
Spo123700.69Barchart | Table
Spo171610.68Barchart | Table
Spo004980.68Barchart | Table
Spo006670.68Barchart | Table
Spo012610.68Barchart | Table
Spo069720.68Barchart | Table
Spo087890.68Barchart | Table
Spo113170.68Barchart | Table
Spo119610.68Barchart | Table
Spo131930.68Barchart | Table
Spo172500.68Barchart | Table
Spo188280.68Barchart | Table
Spo240700.68Barchart | Table
Spo002050.67Barchart | Table
Spo175780.67Barchart | Table
Spo144160.67Barchart | Table
Spo140870.67Barchart | Table
Spo134900.67Barchart | Table
Spo209460.67Barchart | Table
Spo123020.67Barchart | Table
Spo108640.67Barchart | Table
Spo100920.67Barchart | Table
Spo007520.67Barchart | Table
Spo169960.67Barchart | Table
Spo133930.66Barchart | Table
Spo130290.66Barchart | Table
Spo214460.66Barchart | Table
Spo256920.66Barchart | Table
Spo120290.66Barchart | Table
Spo051030.66Barchart | Table
Spo147790.66Barchart | Table
Spo264070.66Barchart | Table
Spo083510.66Barchart | Table
Spo056430.66Barchart | Table
Spo166950.66Barchart | Table
Spo178750.66Barchart | Table
Spo156390.66Barchart | Table
Spo236750.65Barchart | Table
Spo095540.65Barchart | Table
Spo149440.65Barchart | Table
Spo253470.65Barchart | Table