Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGACGGTCATCTTCCAACCCCAAAATTCCTTATCACTCCTAAAAAGCCCCAAAGTATAAAAAAACAAACCCTAAAACAATTTAAAATTTTAAATTAAAAAAGCCATTTTTCTGCTCCATTATATAAATAAAACCCAAACTTAGCAACTTCAATCACTTCATCTTCTCCTTCATTCTACCACGTCATATCACAAATAAAATTTAAAAAATATGCAGCAATTTTCAGATGATTTTGATTTTGCAAACAATACTACCTCATCGGAAATGGAAATATATCGGTATTCAGCGGCCGCTGGAGGTGGCGTTAACGATGTCGTAAATTGGCCGGCGGCGGCGAATTATAACAATAATTACAGTAGCAGTGGAAGCTGTGGCGCGTCGTTTTACACTGGATTATTGAATGATACGACGACAGCGACGGAGGCGAAGGCGTTAGCTGCGTCAAGGATTCATCATAAGGAAGCTGAGAAAAGGAGGAGAGAGAGGATTAATTCTCACCTTGATCGTCTTCGTTCTATTCTTCCCTGCACCTCCAAAGTATATTACTACTACTACTTTTCTCTCTCTTAATTAATCTCCTTTTAATCTTGATTTTATATGTTAATTACTAATTAGGGTTTTTTGTTTTTGAGATATACAATTTCGTTGATGCTTGTACTTAATTAATTAAATTAGCTCACTATTAATCTAGTGGCTAGATGAGATACTCGGGTAGTGGCTTCGCAAACTACTAGTTTGTGTGAACTATTTTCCTCTAAACATATTTTCCATAAAACTCTCGCCGCCCAAATCTCACCTAAATAGCTATTTTGTATCAATAATATTGTTTTTTCCCGTAAAAAAAATCTCACATTAAAAAAAAAAGGATACGTCATGTTATTAGCTACTCCTTGATATTTGTTTGAGTTCATAAAAATTGGTAATAGAAAATAGTGATTTGATATTTTATGTGTTAGAAAATTAGAATGGAATAAGTAATACGGAGTAAAAGAAAGTACGGAATAAGAAACTTTAGAATGGAGTGAGGCAGTGACGAACTATGTTAACCGGTCAATGTTATTACATTCTAGTTTATACACCAACTAATCCAAAATGTTCGTTATTTTGGCCATTTTATTATAAATAGAATTCAATTAAATATATTTCGATTGAACTTGTTTCACATTGGTACTAGTATGAAAATTTCCAGTAAATAAATACGGAGTAGTAACAGTTAAAAGTTGGTCAATCTCAGTGACGAAAATTTCATGGCTAACTACGTTCATAATCATGCTTCTGTGCTCTATTCGTTTAGGCCCTATTTCAGACAAAATAAGTTTAGTTAAGTTCAGATAAGTTCAGATAACATATGTTCAGCAAAAATAAGTTTTTTTCAGATATTTTCACACACAAATAAGTTTATTTCAGACAAAATAACTTTTTTTCAGATAAAATAAGTTTAGATAAGTTCAGTTAATTTCAGATAAGTTCAGTTAATTTCAGATTAGTTTAGATAATATAAGTTCAGTCAAAATAAGTCCAATAGAACAGAGCCTAACTTTTTCATTGATCTGTTCTCCTCTATCATCCGAAATGATGAGTTAGGTTGATCCCGTTTTAGGAGTTAATCTAGTTTATATTTGACAAAGAAAGTATGAAAAGTGGATGGAAGGATAATTGGTGTAAGTAAAATATGATAATAACTTTTGGTCATTCTACAACAGATTTTCTATGAGAACGCCTTAAGTTCAATAAATCCAAATACTTGTGGTTTTATTTGTTTTATACTCCTATATAAGAGGTATTTTGTTAGAATTGGTGATTTGAACTTGTTTCAGTGTACCTTTGTTGTATATATACTCTGTATTTCACAACTATATTAGGCTAAGTATAGTCTCGTACTAGAGTGAAGGCTTCTTTGTACCCTATGATCTTAATACTATTGTCAAAGTCATTGTCTTTCATCTAAAAGAATGGTTCAAGTATCTTATCTAGTTAGCTTCCCATGCGGAAAAAAAAGTTAAATATATAATATATTAATCATCGTTAAGAGTACGATTAGTACTACTTCATATATGAAAGCATTAGCATTAAGAGTTCCAAACTTATTTCTATAATGGGGTAGCAATTGTGCATTCACTTTACATGAATGATAACAATTGTTATGGAGTACATATATGAAATCGAATATGTAGTTATGTGTTCACAAGGTACGATAGTCAAATACTCAAATGGCATTGCTTATGTAGTTATGTGTATGGAGTATATATGTGTGCCCTATCCTATGTTCACTTGAGGAGTAAGTTCAATTTGACTTGTTGTAAACTTTTCCTTATCATTTCTTTGTGTAATGGAAATATGGAAGAATGATCCTTAATAATGCTATTGGGTAATAATGTTTGAGATGTTTGTTGATTTGCTTTAATTAAAACATAAGGGGGAATTTGCACATTTGATTATAGTTATCAGGCTAATTTGCACATTTGACTATAGTTATTTCAGAATGAGAGTTATTCACTTATTCCTTTACAAAGTACTCCGTATATAGACTTAAAACAAACTAAACGGACACCCTATATCACCCTTTCTGATGTTGAAATACTTGATCGATTTAGATTTAACTACAATATTTTTGACATTCTAATCTTATCTTTAATCCCTTTTGATATTTTTACTAGCTTTTCTCTTTTTGTGTTTACATTGAAGGTTCAGTTAATGGAAAATCTTTTACCATTATAAGCTTCTATAATTTGCAGAGATTCGATCTTCTGTTACTGATATTCTCAGTGCAATTCGGATTGAAATTTAAATAAAAATGTCCCACTTTTTAAATACAAAAACTAAACATTTTTCTGTCTTTTTTTGAATAAAAATTTAAAGTACCAACATCATCATCACGGCGTGAAGAAAAAGAAATGAGAACTTATTATTAATATCATTTTTGGGGTTTTGGAATTTTAAACTTTTAGTGAGTCAGTCAAAAAAACATGCACACTTTATTTTTATTTATTTATGCTTTTTTTCTAAAATTTCGACCATGCTCGTTTTAGCTTAGGGTTCAGGCTTTGAACAAAGTTGTTCACCTTTTCTTGGTACACTGTTCTTGAATATTCTTACTCGCTTTTCTCTTCTTTCTTTTTTCTATTTTTTTCAGTTTTACAATTTTTTTTTTGTAGCAGTACTATTTGAGGTTTCTCGTTGACAATACATAACTTTAATCATTAACATCTCTAGATATACATTAGTGAATAATTAAAAAAAAAGGGTTGATATTTTGAAAATTATATTCGATACTAATCTAATAACATCATATATGAATTTTTTTTTNGGGTTGATATTTTGAAAATTATATTCGATACTAATCTAATAACATCATATATGAATTTTTTTTTTTACGTATACATTCATAAAAGAGTGTGGAGTAGTATAAAAAAAAANGGTTGATATTTTGAAAATTATATTCGATACTAATCTAATAACATCATATATGAATTTTTTTTTACGTATACATTCATAAAAGAGTGTGGAGTAGTATATAAAATTATGAATAGTGTCAAATCTCAAAAAGTTCAATTTTAAAATATATATAAAAAAAAAAAAAAAAAAAGGAATGAAGCATATTTTTGTTTTTAATTTGAATAAATTTTTGTTATGAAAACAGACAGACAAAGCAACGCTCCTTTCCAAGGTGGTTCAGCGAGTGTTGGAGCTAAAACGGCAAACCTCGGAGCTTAATGAGCTAGACAACTTGATGATACCTTCTGAAAATGACGAGTTTGCTGTCTACATTCATAATAATAATGATAATAATAGTAATAATCAATTCGATATTGAAGATGGTGACAGTAACAATAATAATCATAAGCTGATTTTGAAAGCTTCATTGTGTTGTGAAGATAGGCCTGATCTCTTTGCTGATCTTAATGGGGTGTTGAGTTCTTTGAATTTGAAGACTCTTCGGGCAGAGGTTTCATCCCTTGGCGGTCGGATTCAGAGTGTTTTCATTGTTAGTGCGGATAATAATAGTGTTCAAAGTGATGATTGTGCCGTGTTCCTGAGGGATGCATTGAAGGGGATTGTTCAACGGTCTGGTTCTGGGTCGGATGAACGGTTGAAACGTAGGCGTAGGGTGTTTGATTCGGTTGCTGATTGCTAACTTAATTTTAACTAGCAGGGATCTTGTTTTTGATGATAATGCTAGCTTCGTTGGTTAAAGTCGTGGCGTCCTGTGGGGGGGTGTATATGTATTATGTAATACGTAATATGTGCATGTTTTTATCGTGTGTATGTGGGGGGCTTGGTTTGGGATTTGTTGTACAAGTTTAAAGTTTGTATCCATTTCTGTGTTTCTTCGTTGTTGTTTGGTTTGGGAGGGGTGTAACTGTATAAGCCTATAAGATGAAGTACGGAGTATAAGATTATTGTAAACAGTTTGAAGCAAGGGCAAGCATTTCTTGTGCTCTAAGCGCTTCGTTTACTTTATTTATCAACTCCGACGTTATAAATATGTTTCAATGCAATATTGATGTTGAAGGTTACTCAATGTCATAAGATCATCCATGGAAGATTGGAAGTTGTCTCTAAATTACTCCTACTCCGTTCACATATCTCAATAGGGTCTCGGTGAGGAATACTTTCCGATCCCAATATTAACTTCTCATATGGAGAATATCGAAAAGAAGTTGAACATAATGCAGGTTGTTACATACACAAAACACCAAGCATTTAAACATGGATTAGTCAAAAATTACTAGGG AGACGGTCATCTTCCAACCCCAAAATTCCTTATCACTCCTAAAAAGCCCCAAAGTATAAAAAAACAAACCCTAAAACAATTTAAAATTTTAAATTAAAAAAGCCATTTTTCTGCTCCATTATATAAATAAAACCCAAACTTAGCAACTTCAATCACTTCATCTTCTCCTTCATTCTACCACGTCATATCACAAATAAAATTTAAAAAATATGCAGCAATTTTCAGATGATTTTGATTTTGCAAACAATACTACCTCATCGGAAATGGAAATATATCGGTATTCAGCGGCCGCTGGAGGTGGCGTTAACGATGTCGTAAATTGGCCGGCGGCGGCGAATTATAACAATAATTACAGTAGCAGTGGAAGCTGTGGCGCGTCGTTTTACACTGGATTATTGAATGATACGACGACAGCGACGGAGGCGAAGGCGTTAGCTGCGTCAAGGATTCATCATAAGGAAGCTGAGAAAAGGAGGAGAGAGAGGATTAATTCTCACCTTGATCGTCTTCGTTCTATTCTTCCCTGCACCTCCAAAACAGACAAAGCAACGCTCCTTTCCAAGGTGGTTCAGCGAGTGTTGGAGCTAAAACGGCAAACCTCGGAGCTTAATGAGCTAGACAACTTGATGATACCTTCTGAAAATGACGAGTTTGCTGTCTACATTCATAATAATAATGATAATAATAGTAATAATCAATTCGATATTGAAGATGGTGACAGTAACAATAATAATCATAAGCTGATTTTGAAAGCTTCATTGTGTTGTGAAGATAGGCCTGATCTCTTTGCTGATCTTAATGGGGTGTTGAGTTCTTTGAATTTGAAGACTCTTCGGGCAGAGGTTTCATCCCTTGGCGGTCGGATTCAGAGTGTTTTCATTGTTAGTGCGGATAATAATAGTGTTCAAAGTGATGATTGTGCCGTGTTCCTGAGGGATGCATTGAAGGGGATTGTTCAACGGTCTGGTTCTGGGTCGGATGAACGGTTGAAACGTAGGCGTAGGGTGTTTGATTCGGTTGCTGATTGCTAACTTAATTTTAACTAGCAGGGATCTTGTTTTTGATGATAATGCTAGCTTCGTTGGTTAAAGTCGTGGCGTCCTGTGGGGGGGTGTATATGTATTATGTAATACGTAATATGTGCATGTTTTTATCGTGTGTATGTGGGGGGCTTGGTTTGGGATTTGTTGTACAAGTTTAAAGTTTGTATCCATTTCTGTGTTTCTTCGTTGTTGTTTGGTTTGGGAGGGGTGTAACTGTATAAGCCTATAAGATGAAGTACGGAGTATAAGATTATTGTAAACAGTTTGAAGCAAGGGCAAGCATTTCTTGTGCTCTAAGCGCTTCGTTTACTTTATTTATCAACTCCGACGTTATAAATATGTTTCAATGCAATATTGATGTTGAAGGTTACTCAATGTCATAAGATCATCCATGGAAGATTGGAAGTTGTCTCTAAATTACTCCTACTCCGTTCACATATCTCAATAGGGTCTCGGTGAGGAATACTTTCCGATCCCAATATTAACTTCTCATATGGAGAATATCGAAAAGAAGTTGAACATAATGCAGGTTGTTACATACACAAAACACCAAGCATTTAAACATGGATTAGTCAAAAATTACTAGGG ATGCAGCAATTTTCAGATGATTTTGATTTTGCAAACAATACTACCTCATCGGAAATGGAAATATATCGGTATTCAGCGGCCGCTGGAGGTGGCGTTAACGATGTCGTAAATTGGCCGGCGGCGGCGAATTATAACAATAATTACAGTAGCAGTGGAAGCTGTGGCGCGTCGTTTTACACTGGATTATTGAATGATACGACGACAGCGACGGAGGCGAAGGCGTTAGCTGCGTCAAGGATTCATCATAAGGAAGCTGAGAAAAGGAGGAGAGAGAGGATTAATTCTCACCTTGATCGTCTTCGTTCTATTCTTCCCTGCACCTCCAAAACAGACAAAGCAACGCTCCTTTCCAAGGTGGTTCAGCGAGTGTTGGAGCTAAAACGGCAAACCTCGGAGCTTAATGAGCTAGACAACTTGATGATACCTTCTGAAAATGACGAGTTTGCTGTCTACATTCATAATAATAATGATAATAATAGTAATAATCAATTCGATATTGAAGATGGTGACAGTAACAATAATAATCATAAGCTGATTTTGAAAGCTTCATTGTGTTGTGAAGATAGGCCTGATCTCTTTGCTGATCTTAATGGGGTGTTGAGTTCTTTGAATTTGAAGACTCTTCGGGCAGAGGTTTCATCCCTTGGCGGTCGGATTCAGAGTGTTTTCATTGTTAGTGCGGATAATAATAGTGTTCAAAGTGATGATTGTGCCGTGTTCCTGAGGGATGCATTGAAGGGGATTGTTCAACGGTCTGGTTCTGGGTCGGATGAACGGTTGAAACGTAGGCGTAGGGTGTTTGATTCGGTTGCTGATTGCTAA MQQFSDDFDFANNTTSSEMEIYRYSAAAGGGVNDVVNWPAAANYNNNYSSSGSCGASFYTGLLNDTTTATEAKALAASRIHHKEAEKRRRERINSHLDRLRSILPCTSKTDKATLLSKVVQRVLELKRQTSELNELDNLMIPSENDEFAVYIHNNNDNNSNNQFDIEDGDSNNNNHKLILKASLCCEDRPDLFADLNGVLSSLNLKTLRAEVSSLGGRIQSVFIVSADNNSVQSDDCAVFLRDALKGIVQRSGSGSDERLKRRRRVFDSVADC Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo26364.1 vs. NCBI nr
Match: gi|902200874|gb|KNA13851.1| (hypothetical protein SOVF_112930 [Spinacia oleracea]) HSP 1 Score: 520.8 bits (1340), Expect = 1.500e-144 Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 1
BLAST of Spo26364.1 vs. NCBI nr
Match: gi|731324580|ref|XP_010673045.1| (PREDICTED: transcription factor bHLH106 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 387.9 bits (995), Expect = 1.500e-104 Identity = 222/277 (80.14%), Postives = 239/277 (86.28%), Query Frame = 1
BLAST of Spo26364.1 vs. NCBI nr
Match: gi|720050621|ref|XP_010271836.1| (PREDICTED: transcription factor bHLH106-like [Nelumbo nucifera]) HSP 1 Score: 190.3 bits (482), Expect = 4.500e-45 Identity = 126/249 (50.60%), Postives = 168/249 (67.47%), Query Frame = 1
BLAST of Spo26364.1 vs. NCBI nr
Match: gi|697186772|ref|XP_009602423.1| (PREDICTED: transcription factor bHLH106-like [Nicotiana tomentosiformis]) HSP 1 Score: 183.0 bits (463), Expect = 7.200e-43 Identity = 112/216 (51.85%), Postives = 147/216 (68.06%), Query Frame = 1
BLAST of Spo26364.1 vs. NCBI nr
Match: gi|698522082|ref|XP_009757856.1| (PREDICTED: transcription factor bHLH106-like [Nicotiana sylvestris]) HSP 1 Score: 179.9 bits (455), Expect = 6.100e-42 Identity = 111/216 (51.39%), Postives = 145/216 (67.13%), Query Frame = 1
BLAST of Spo26364.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R2V2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_112930 PE=4 SV=1) HSP 1 Score: 520.8 bits (1340), Expect = 1.000e-144 Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 1
BLAST of Spo26364.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FH25_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g063120 PE=4 SV=1) HSP 1 Score: 387.9 bits (995), Expect = 1.000e-104 Identity = 222/277 (80.14%), Postives = 239/277 (86.28%), Query Frame = 1
BLAST of Spo26364.1 vs. UniProtKB/TrEMBL
Match: D7TQR5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g01240 PE=4 SV=1) HSP 1 Score: 173.7 bits (439), Expect = 3.100e-40 Identity = 109/211 (51.66%), Postives = 142/211 (67.30%), Query Frame = 1
BLAST of Spo26364.1 vs. UniProtKB/TrEMBL
Match: A0A0U2S895_9ROSA (BHLH transcription factor OS=Prunus pseudocerasus PE=2 SV=1) HSP 1 Score: 171.0 bits (432), Expect = 2.000e-39 Identity = 116/257 (45.14%), Postives = 160/257 (62.26%), Query Frame = 1
BLAST of Spo26364.1 vs. UniProtKB/TrEMBL
Match: A0A078J4D4_BRANA (BnaC04g56860D protein OS=Brassica napus GN=BnaC04g56860D PE=4 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 2.600e-39 Identity = 107/225 (47.56%), Postives = 146/225 (64.89%), Query Frame = 1
BLAST of Spo26364.1 vs. ExPASy Swiss-Prot
Match: BH106_ARATH (Transcription factor bHLH106 OS=Arabidopsis thaliana GN=BHLH106 PE=2 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 3.400e-40 Identity = 114/253 (45.06%), Postives = 153/253 (60.47%), Query Frame = 1
BLAST of Spo26364.1 vs. ExPASy Swiss-Prot
Match: BH107_ARATH (Putative transcription factor bHLH107 OS=Arabidopsis thaliana GN=BHLH107 PE=2 SV=1) HSP 1 Score: 150.2 bits (378), Expect = 3.300e-35 Identity = 103/231 (44.59%), Postives = 148/231 (64.07%), Query Frame = 1
BLAST of Spo26364.1 vs. ExPASy Swiss-Prot
Match: BH030_ARATH (Transcription factor bHLH30 OS=Arabidopsis thaliana GN=BHLH30 PE=1 SV=1) HSP 1 Score: 142.5 bits (358), Expect = 6.800e-33 Identity = 88/200 (44.00%), Postives = 132/200 (66.00%), Query Frame = 1
BLAST of Spo26364.1 vs. ExPASy Swiss-Prot
Match: BH032_ARATH (Transcription factor AIG1 OS=Arabidopsis thaliana GN=BHLH32 PE=1 SV=1) HSP 1 Score: 122.5 bits (306), Expect = 7.300e-27 Identity = 89/246 (36.18%), Postives = 139/246 (56.50%), Query Frame = 1
BLAST of Spo26364.1 vs. ExPASy Swiss-Prot
Match: BH051_ARATH (Transcription factor bHLH51 OS=Arabidopsis thaliana GN=BHLH51 PE=2 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 5.600e-19 Identity = 74/186 (39.78%), Postives = 108/186 (58.06%), Query Frame = 1
BLAST of Spo26364.1 vs. TAIR (Arabidopsis)
Match: AT2G41130.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein) HSP 1 Score: 166.8 bits (421), Expect = 1.900e-41 Identity = 114/253 (45.06%), Postives = 153/253 (60.47%), Query Frame = 1
BLAST of Spo26364.1 vs. TAIR (Arabidopsis)
Match: AT3G56770.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein) HSP 1 Score: 150.2 bits (378), Expect = 1.800e-36 Identity = 103/231 (44.59%), Postives = 148/231 (64.07%), Query Frame = 1
BLAST of Spo26364.1 vs. TAIR (Arabidopsis)
Match: AT1G68810.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein) HSP 1 Score: 142.5 bits (358), Expect = 3.800e-34 Identity = 88/200 (44.00%), Postives = 132/200 (66.00%), Query Frame = 1
BLAST of Spo26364.1 vs. TAIR (Arabidopsis)
Match: AT3G25710.1 (basic helix-loop-helix 32) HSP 1 Score: 122.5 bits (306), Expect = 4.100e-28 Identity = 89/246 (36.18%), Postives = 139/246 (56.50%), Query Frame = 1
BLAST of Spo26364.1 vs. TAIR (Arabidopsis)
Match: AT2G40200.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein) HSP 1 Score: 96.3 bits (238), Expect = 3.100e-20 Identity = 74/186 (39.78%), Postives = 108/186 (58.06%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo26364.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo26364.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo26364.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo26364.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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