Spo26407 (gene) | SpinachBase

Overview


Name	Spo26407
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	DNA-directed RNA polymerase (2.7.7.6)
Location	chr3 : 30452597 .. 30466428 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCGCCTCCACTTCTGCGAGGCCTGCCCTTCCTCCGCCTCCGCGTCTTCCTTCACCATCACCACCGCCTTCTCACACCCGTCTTCTGCACTCCTCTCCGCCCTCGTTTATGCTCGTCCTCTCCTTCTGAGTCGACTCGGTCAGAGGACGATGTGTACTCGTCGGCGAGTGAACTTTTTACGGTAAAAGATCCTCCCAAGTTTTTCGACGGAATTGATGAGATTAATTTCCGTAAATGGAAAGATAAAGAAGATGAGATTTTACAGGATATTGAGCCTATTACTTTTCTCGCCAAAGACATTATCCACTCTGATAGGTATGATTTGTTTTTAGTTTTTTTTTTCTTTTTTTGTCCAGATTAATGTTTGTTAATTTATTGAATTTTATTATTATCTCATTATTTGTCATCCATTATATTGTGGTTTTGCTTAATTGAAAGTGAAATTCTACCCTTACAGTATAGTTTTTTCTACTTGGTGGAAACAAAATAATTTGACTCTCTTTAGTGATTTTGTAGTTTTGTAAATGTGATTAGAGTGCATTAGGTACATTTTAAGAGCTAACTCATGGATATATGACTAATTTATAACCAATTAAACCAAAATCACTGACCTATTTATGAGTTAATCAATTCCCTCCAAAACCTACAAGTTCTGCTTCAACACTTGTGCAATGTACAAGTTCTTTATACTCAGTATTTTTTAACATGTTGCCTGAGTTAGTAGACTGATGATAGTATCAATACGTAAGAATTAATTGACTTCACCATACCTTGCCCCAACGTTCGATTATTTCCAGTCACAAACTAACAACTACAGTCTACAGGAACATGTCAGTCTGCATGACTCATTAGGTAAGTCTGGAAATGTAAGGCCACCAGTTCTAACAGTACGATTGTGAGGGTCCAGAACTTGAAACGATGCAGGCCATTTTTGGGGGATAGGAATCGAACAACTGACAGTTTGATCCACTGTCGAATATTGAATCCCACATTCAGTTGTACCATTAACTTGAACACAACCACATTTGTACTTTTCTTTGTTCAATTGGTTGTCTATCACTCTTTGTAACACAAAAAGAAGAATACAAAGTAAAATCGGGAATATTACAAGTCAACATTATCATTTTCATTATCATTATCATTACCCCATTGCCTCAAAAAGGCTCCCGCAAGAAGCGGGGTAAGGGGGGTCGGGTGTACGCAACCTTACCCCTGCATTTGCAGAGAGGTTGTTTCCAATTGACCCAAAAGCGATAACGGGACGATAATCTTCTACTTCATGGAAAGGAAGCGAAGAGGTTTTAAGAGCCATTTTGATTTAGTTCATTACATCCTACAGCCAAAAGAACAAATGAATCTTTGGCTCCATCGGAAATAGACATATCTGTCTCTATAATACATAGGTGAGAACAAAGCAAAGTTAAGACAATATTAAACATAATAACCTTCTCAATTTCACATGACTCAAAATCAAATAAAGATTAACCATTGGAGAATGTCAGTTAGATATAGGAAGCATGTACTCAAGCAATTCAACAACTCAGCAGATAAATTAGAAGATACTTATTATTTTTAACACCCTAAATCTGTAATCCATTTCAAAGGAATGTTAACATCAAAATGTAAGACAATAGAAAGATCAAAGCTTAATATATCTGCAACTCACATACTTAGAACAACTATTAGTCCACTAATAGACAATGTTTTCCAAGACACAAATGAATCAGATGAATCCATTATGTTATAGAGAATGAAAATACGGAGATGAGCAATTCCTACGTTGACTTTTGCTTTGAATATGCAGCACCATGTCATTCGTGTTGGGGATTAATGGTAACAAAAATTTGTAGAATAGCAGCCTGATGGGAAGCACTAAACCAGTTAAACCAAACCAAAAAAGCAAGAACACCACTTGCTAAACCAAAGTAAGAACAGTAGCTAGCCATAAAAAATCCTAATAGCAGCATGTCTTCAGCACAGTCTAACAACCATGAGTGCAGCATGATACACACACAACCATGACTGCAGCATGATGCGAAGATGGAATTATATAAATAACAATTGCCCAGATTTGTCGTAATACTTCAAACTGTTGCAAAGTACATTAGCATTGTTCAAAAAACACCAATCTGTCACAAAAGCTAATAACTAAGACTAATTTAACTAGAAAAATACCTATCTGTCATAAAAGACAACAACCAAGACTAAGTTAAAAGAAATGGTTCGGGTTGAGATGCAGGTGCAACCATGCTTCTGGTCAACTACAATCATCTTTTCTACTTTTTTTTTCAGTCATGCCACCTTTGCATGTCCTTGAATTATGTCCTAAGGACTTGCATCTCTTACATTGAACATTCCCTTTTCTGGATCACCATCTTCTCTTCTTCTATTGACCACTTCCTTGACTACTTCCCTCGTTAACATCATTAGATTACACTTGCCTACTTCCCCCACCAACATTAGTAGATTGGACTTGCCCAAGCTTTCATGAAATTACTCTCTGCTAATAACCTGAGCTACTGGGTTGGTAGGTTCGAGCAGTTGGGTAGATCCTAGTAGCCTTCTCCTAGTAGCAGTACTCTTAGGTATTTTATGCAAAACAAGGGATGAGTCAAGTGAAAGGTTTGAACGGGATAGAGCAGTGATCTCTTGGTTAATGGGCGTTGCATTTGAGTATGTGGGGAAAGGGACATAAATTGACTGTTATTGATCCTGTTCACTATTAGGGGGATTTCTCCTTAGAGGTAGGTTCTTCGCTTGTGATTTTGGTGGTGCCTTAGATTTTGGTCCTTTACCTTTCACAGGAGGTTCAATCAGAATTTTTGTCTCATTAATTATCTCAATGTCATGCCAATGCTCTTCAATAGCATGGTTAATTCTAGTCCGATACTCATTGATAACACTCTCATTGTTAACCGGTATGTTTCTGTTACTAGGTGTACTGCTCCCAATGTGCATATTATCCTTATATTGTAGTGTTTCACTAAGTTTCCTAGCACCAGTCACACAATCAGTGAGCTTATCAACTACCCAACATACACATATGTTACCTTTGTTGTACTTAACCTGTCTATTATTGATTGACATTAAGTCACTGCCCGCTTTAAGCATTACATCCTCCATATTATAGCAGTAGTGAAAACTAGGAAATTTTGGCATTTGATACCCCTTTTCTTAAATCCTTCTTCATACTCTATTATCAAGTCAATCCGCATAACCTTATCAACATCATCAACTATCAAATCACTTTCTGGACCCGCAAGTGAAATCTTAATACTAACTGATCCATTCTGCTACAACACAACAGACACCAACCACAAACAAATCCACAAATTAAAAAACGACCAAAATATATACTTATCACAATCAACTTCAACTAATAAATCATGAATCTCAACCAACAATTCCAAAATTGTATTAATTCATCAAGTATAACAAAACAGAGTATAATTTAACCTACTTAAATTTGTGCTTAAAATTTGAGCGATTGTTAAGAAATATGTATAAGTAACCTTGATTTTCTTTTTAATATTACCGCACTTGCTTTCCAATTGCCTCCAAAACTCAGAATGCGCCGAAGTTACCCGCGATTAAAATCCTAAAACTCAACGAAGTACTTTCCCCAATGTGTTTGCAGTTGCGAAAATTTGCAGAAACCATACTAGAACATAGCAAAATATCAAAGAGATTTAAAACCAGTGAATTTTTATTGAGGTTGAATTTGAAAGAGAATAAGGGATGAGCAAAGATAAATTTGGAAAAGGGGAACGGAGGAGGAGGAATACGAGGTTTGTAGTTTAATCCAAGGGAGTCAATAAAATAGTGGGGGCTTTATTTATGATTAAGTTAAGGGGTAGGTTAGTCAAGTCACTCATTTAAGCATGGGTCAGCTTTTAACTATGTAGCTAGTGCACTCTAATGACATTTACAAAAGTACATGGCCATTGGCCACTAAAGAAAGTCAAATTATTTTGTTTCCACCAAGCAGAAAAAACATACTATAAGGCCACCATGACGAATTTCCCTAATTGAAATTATTAAGATACCTTATTACTATGATATCGTGATTAAAGTTGTTATGTTGTACTTATTATATCCTAAGCTATGTTACTAGACTCGTTTGAAGTGTTGAGCATGGTTATGTGTCCAAATTTTAGACTCGGCTACAACTGTTAGAACAAAGGTATGCGTCCTAGTTTTAGACATGGCCATGTGCTATCTTATGAAGTTTTGTGTGATTTTGGTCCGAAATGAATGGTTCGATTGTCATCTTAGTGTCGATTATCTGGCATCGGTGATTGAGATGAAATGAAGAGTCGCAATAACATTCCTCCTAATATTTAGTGTTATAGAAGAATAATATGGTCTTGGTACTTGGAAAACTGGAAAGTGTATTTGTTACAAACCTTGTAAAACAACTTGCTTGTTGAAATCAAATCAGAATCCTTCTGTTTGAGCCTTAATTCTTTAGGATTGGAACCAAATAAGTCATCGCAAATAAAATTGACAGAATGTTTTTTTCCATGTACACGACAATGAAACATGATAGGGATGTTTCTCTAGATTGTTGTTTTCCTGGTTATTACAATGTAATTTGTTAACTAGACATATCTTAAAACGGATAGAAAATGATTGCTCATACTCTATTAATTTTCTTGTGTTAAAACACTGACATCCTTGTCCTTTGGAGATGACCTGGTTCTAGACAAGCTACTCTATGGTGCGAGCGCGTATAATTTAAACATTCTATTAGGAAGCCCTAATTAGTATTACTGGTGGTTGAAAGAACCTGTACGTTAATATATGACACATATCTAAAAGGTTTGAAACAACAGAATAAGTTGGTTGGTTCTCTGGAAAGTGAAGTTCAGATGTATAAGGGACAGGAGCAAAGGAAATAAAAGTGAGTAGAAATGCATATAATTGGTGGAAAAATGGAAATGAGGCTTACTGGGAATAAAGAGGTTTTTGGAGTTGAAAATCCTGTAGATAGAATTAAAAATGATCCTTGCAAAGTTATGCGGAGAAAAAAGATTGGACATGCCTTTGTAATGGTGAATTAGAACCTGTAATGTCTTTGTTACTTTATCAGCTTCGGGGAAGGGGGGATCTAAAGTTTTTCCCTCCCCTGAGTTTTGGCTAGGCTATAGTGATTTTGCAATAAAATTCCTTAAATTTGCTCTAAAAATAGAGTGAAGCTAGGTACTAATGGAACAACCTTCAGATTATCTAGAGCGTTGGCTTTCTAAAGATTTTCTAGTGGAAGTAAATGGAAAGGAAGAATAGTTGATATATAAAAGAACGGGCCGGAGCTGGATATACTTCTGTATCACATATTATAGTTTCTGTGTTACTCGAAAATGCTTCATAGTGAATACCCCTTGTGACTAGCGTATATTTTGTAAAAGGGATGATGGGATGCTGAAGATTTGGGGCCAAAGATTCTGGTAAAGAGGTCATGAGATGCATGCAAGAGCTTCGCTATAATGTTGGTGAAGCAAGCTTCCATGCCTTCAAATTGTAATCTTTAATGCTGTGTATTCATTCTTGGCCCCTGACTAGGGGTAAATGAAGGAAAATTATAAGAGATAGTAAAAGATGTAAAATTAATAATGGAATTAATCCTTGTGCATGTGGCTTATGTGTATTCATAGCCCATTTTGTTTATGTAATCTAGTACTGAAGTTATGGATCATATCTTAGAAGTAGAACGTAATACTTTAAACTCTTATGTTATACTGGATCTTAGGAAGAAAGTATACTATATTAGACATATGTTGTGTACACTTGTTAATAAGGGTGCTGAACTATCTGAATCATGTACTAAAGTCAGGTTAGCAGTGATAGAAAGTGAACTCTTCTTCAGATCTTTTAGTTACTGTCGGGTCTTAGCCCACTTAGGTTAAATTAGTCCATCCCTGGTCTGTCAGACATAATTTCCTGCCACTATCTTGCGTAGATTTCGTTTTTGCCCAAGTGCTGTTCTTATTTTCTTTTTAGGGAAAGTTTCCTAGGAGTAGTTTTTGAGACCCGTTGTAAAGAAAATTTCTATCTTTTTATGAAATTGGATGGATGGAAGAGAGCGTATTTTTCCTTTCTATTTACTTTACCCTTCGTACTTCCAGTGGGTTTAGCTAGGAGATTGGAGAAGCTATGGAGGTCTGGTGTAGGTTAGAGGAAGTGGGGTCATCTTCCTAGATAGGACTTTGTCTGTAGACCTAAGAATGAGGGCTGCCTACGATTTAGTAATTTGGTGTCTAAAAGCGTCGATTATAGGAAAGTGGTGGTCGTGTTTTCCGCGATAGTGTAGTTCTCTTTGACACAAAGTGACTCCGGGCAGATACGGTCTTCAATGGTACGGCTAGAATGCGCTAACAGAAGTTCTTTTCACTAGCTCTTTCTTTCTTTGTTTCGTGGGTCAAAGTTCAAGGCCGGTGGGGAGAATGTTGTGTTTTAGAGGATGCTTGGGCAGGGAGCTACTATTTTGTAGTATTATTCCCTATCTCTTTATTTGATTGGTTTGTCTCCAATTTCTTTTCTTTTGAGTGAGGAACTGTGAGTGTTTCTTGGGATTTTTATTTTGGCCCCAATGACTATGACTGGGAGTTTGAGGAGCTTATTAACTTCTTGAGAATCCATGTATTAAATTAAGACTAAGGGTAGGAGAGTGAAGTTGGTTGATCCTTTAATGAAGAGTAAAACAAGAGCAAAATAATTTGAACAATTTGGGAGAAATCACTCAATCAGCTGCCTTTCATTCACTATTCTGTCTCATTTACATTCCTCACTTAATTACATTATATAGTGAGCCTCCTTGGACACATTCTTATACCCTAATCAATCAGATGCTGCCACCAATAATTAGTGACATCACTCACTACCCGATAAACTGACGGAAACTTCTAGCAGGATCCTATGACGACTAAAAGAAACAGAGAGCTAACAATAGCTGGACAAAGCAGAAATTATCTAGGACACAATATCTAAGGAAAATGCATCAGCATTTGACTGCTGCTTGGTGTTCTATTTGGCTAGTCTTCAACACCTAATGGTCTTTTTTCTTGTCATTCATCTTAAAAGTGTTCGCATTCGTTTCTTATTTCTAGTTTTATGTGGCGGCTAAGCTTCTGAAGCAGGTGAAAACTTTCGAGTGGGTTGCATCTTCTCCTCATATGTGTTATTTATTTCTTGGTAGTGATAGATTAAGGGATTTTCCGTTTTTGCATTATGGCGTGGTATTTTTCCTTTAGGCCACTGGTCCACAGTAAATCTCCCAGATGTGAGTATATGTCATGCATTTTAGTCATTTCTTCTGTGCTTGTGTTTATCTTCATTTATTTCCATTACCACTCAATTCTGCCTATAAAGCGGTAATGAATGGTAAGGGAAATTTCTCAAGGTAAACACATGTTTTCTACTGCCTTTGACATTATTATCGCTGCCTTTCGTACGGTCCATAAATTTGGTTTGAAATTTAGGAGAAACAAGAAGTGAGATGCGAGTATTCTAGAATGACAAAAAAACTCCTAAGACGAGGTTCCATTCTCAAAGACTTTAGAAGATTTTAGGTTTTTAGCTCAAAGTCAAAGATGCGATTATTTAAGCTCAAAGTCAAAGATGGGATGATTTAAGCTCCAAAGTCAGTGTTGACCATATTTTTCTTTTTGGTTTATCTCTAACTGAAAGTAATATTCTCGAAGGTCTGACGACAACTGCTGAAATTAAAAAAAGACTCTCTAACCAACATAAGTTCCTGTCAGAGGTTTCCTTGCTTGTTTTCTACCTGTTTTCTTAATGCTTCTATATCAAATTGTTCAAATCATAGGTTTTGATACTTGCATCATTCCTGAATTGTCAGTGTCTCCTTTTAGTAATAAGATAAACCCCATCACACATGTCTTATGTTTAATGAAATAATACCTACCTTCCACTTAATCAATCACCTTATTTATTTATTGATTTTTGTTTTTTTTTTTCTAGTTTGCATCTAGCTCATGCTTGAGGGAACCATCACATCAAGCAATGTTAATGTATCACTGTTCTGACTTGAGGGAACCTGTTCTGTTTGTTTAATTATTCATGGATAGAACTGTCAGATCGGGTGTGCATGTGTGGGTCTAGTTTGGGTCGGGGCTTGTAGTGTTCGGTTGAATTCGATTCTAGCCATGCTAGGTCAGTGTGTCCATGTGGATTAATTCGGTTTAGGGTTACATTGGGTTTGCTCAGGTTGTACTGTGTGGATCAGCTTTTGGCAGCTCCATTAAGAATGGGGTCCGCCTTGATCATCCATTTCAGTGCAATGTGATGTCTCCATTTATATATATGAAGTTTTTTTGAGGCTCAATGACCTACCAGAGTCCAGAGGTATCAGACCTTTGTTGTAAGGCCTATTTGTGAAAGTTCTTGTGTTGGATACTTGTCAAATGGGTTGGTACTTAAACTCTTTAAATAAGGGATAATAAAGGTTCTGTGTTGATCCTTTCTGATGTGCTTTCAGTATTTCAATGATTCAAATACAAAACATGACTTTTCAAACAACGCTGATACTCACACATGAAGAAGAGGATGTATGGATAGAGGATGCTGTTTAGCTTGACCCTCTAATTAGGCAATATATCCTGTTTGGCTTGACCCACAAACTAGGAATATAATATTAGTTTTCTTGTAATGCCTTAAATGGATAAATATACTTGATTATTATTCTTGAAAAGTCATAAAAAGCTTGCAACAATGGTTTTTAAAAGTCCATCTCTTCGAAAAAGTATCTTGTTTTTAAATTTTGGTTAGGGCAAGTTTTAATGGGCTAGTTTTTTAACTTTTTTTTTTGGACTCTTCACAAAGACATCAAAACCCTAGTCCTTAAAACTTGCATGAATTCCTTTGATCCTTCCAGACTCTAAGGTTATTGTACCATGGTTGACATTTTATATTGGCAGGTACATGGATGGGGAACGCCTGTCGCCTGATGATGAGAAAGTTGTTATAGAGAGGTTGCTTGCCTATCATCCTCGTTCTGAAGATAAAATTGGATGCGGACTGGATTCAGTTATGGTATTATTCAATCTTCTCACCATACTATTGTACCTCTAATTTGCTATCACTTTTTGTGTGTCATGAGTAATTTTTGCCAACAGTTTATTGATTCTAAGATAAAGTGGTTAGCATATTTAATCCAGCCATTACTTAGATTTTAAAATGGATGGTTCCCTATAAATAAAACCGATTTTTGCCCACTACAATCATGATAACCAACTAACACCTTTGAAGTTCGAACCATTGACACCAAATATGTAATTGCAACTCCCTAGAGTACGAGATGTCCATTTTTTCGGTGTTGAAACAATTGTTAAAATTTCCGAGAACATAATATTTTAGTTCAATTCATGAAATTTCTTATATGTAACACTTGTTTAGATAAGAGGAAATGGAGAGAAAATGAGGGAAGGGGAAGAAGTTCCCTTGTTTGGATAAGGGGTTGGGGAAGGAAGAGGAGGAAGAGGGTGGGATCCTCCCTCTTTAATGAACTCCATCCCTCCGAAATTGGAGAATTTGGAGTTGAAATGAGCTCCACCATTCCTCCCGTCCTCCTCTTCTCTCCCCTCCCCTCCCAGCCCCTTCCTTTCCTTTCCTTTCCTTTCGATCTTGCTATCCAAAAAAGCGTAAATAATATGGATTAATCCTTTTTTGAAAAATAAAATAAAAAATGCACCGGTATGGGCTCAAGATTTAAGAAAGTGATTAAAAGTAAAAAAAAATGCCCATATGATAAATATCAAACGTTTATAATGGTAGAATGAGTAATTGTTTGCATGGTGATAACTAATAATAAAAATTGCTTTTAGCTGTGAGAATACACTTTTTTACCCTGGAATGTTATGCGTAATTAAAAGTAGGAAAATTGCCTATGAGTATCACCAACTTTCTCTATTGGGTGACATTTTTCTCTCTGCATCACCAACTTTCCCATAATTGGGCTCATCAGTGATGGAATCTACAAGGAATAAACCGTCAAAAAAAGAATAAGTATTATAATAATCTATTTTGTGAATCGAAAGAAAAGGAAAAATAGAACTTCAGCCCCTTACCCTCCCCTCTCCTATGTGTGACTTTCACCCCTCTCCTGAAGTCCACCACATGTCCACCACCAAGCCCCACCCCTGACCACCGTGCTCTCATGCTGTGGTACCACTGTGTGGCTAAGGAGACTGAAACCACCATCTCTAAGACATGCTCTTTAATGGGGGGCTGAAAGAGGAGGGAGATGGAGGGGACAGGAGGTGGTTGGAAAATAGTGCAGGGGAGGTAAGGGCTGAAAGAGGAAGGAGATGGGGGATGGGGTGGTTTCTGTGTTAGGCCTGTTAGCCTTCTTGATAGCCGTGCGTTGCAGATTTTGGAAGGAAATGGTGCTGTAGCGCTGAAGTTGGAGGTGTAGGGAAACAGTAGGGAGGGCTTAACGCGGTGGTGGTAGGGTATGAGGGTCGTTACTAGTGTAGTAGTTAGTCCTGGCCTGGGTTTCTGTCTTCTGCTGGTCAGAACACATGAGTGGGTGGGTGCGATGGGAAACCAGCAAGAGGGGAAGGGATATATTTTTTTTCCCTTCTTTTCTGATTTCCGTTTATTTCGATTTAGAAAATAGGTTTTAATTTTAACGGAAGATTACACCGCTGGTTAGACAATAAATTGTGAACAAAGTATACGAAAGTTGGTGATATTCATCAATAGTTCTAGCCAAATTGTAAATTGTGATATAATCTCTGTACATGTTGCTAATTTATTAGTATAGAGTTGACCACCAAACAACAAACTATCTCTTTAAAGTTTGAACTACGGGATGATTAGTGAGCAAACTAAATTGGGCCTGAAGGAGTATGTGATATACAACATTACAAAACGGCACTAGGGAGTAAGAATATAGGAAGTAGAAACTAAAAAGGGACAAAGGGGGCTATTATTTATTATTATTATTTTATTTTCTTATTTCTGTGTGTTATTGTATTATGATTGTTACTACTAGTGATTTTCTTTACTACGCTCTCTATAAATTTGTTTTACTATTATCTTTATGTCGATTTTCATCTGCTGCACACTCCGGTTATCTTGCCATATTCATATAACTCATTTATCAAATACCTCAGGTGAATAAGAATATTAGGGTGTGATCCATGAAATTTAATAGGAAAAATACAGCTCTCCACATCTATGTTGTATACTTCTAATGAGCTGCGACTTTTACTCTCGTCAGCACTCCACATCTATGTTATATACAGTTCTCCACATCTATGCTGTATACTTCTAAGTCCAATTAGCACATCACTCGTCACTATTACTTTTCCACCAACCACTACTAATTTTATAAACAATCTCACCAATGGTGCACATCCCTGTTACTCCTAATGCTGACTTTCTTTTTAGTCATTATTCAGAAATGAAATACTTCCTCCTATTTTATGTCAATTTTGGCACAAGAATTAAGGAGTGACACACTTCATTTTGGCACAAGAATTAAGGAGTGAAAAAGAAAGACTAAAGACAATAATGCTCTTAACGTATACCTACCCGAAGCACCCACTTCCTAAAATTAATGTGGCATAAGGGTAGAGTTGAAATTGCATCTTACAAAACATTCCAAAAAGAGAAACTTGTCAACCAAAAAAAAAACATCACAAAAAGGAATACGTGTCAACAAAAAAAGGCAGAGGAAGTATAATATCAGGTAAACAAATATAATCAGATTACTGCACCTTTGTAGCATATGTCACCTGTGGGTCTTTATTATAACAGTCCTTGTACAAGTTTCCATTAAGAATAAGGTTGTCTTCTTGGACCCCTTTACACCTTCCTTGGGGTACGATTCATACTGCGTTGTTGTAGATGTTGAAATACTTAAAACTTGATTGTACCATTGATATTTATGTTACGGCTTGACCAGTAAGAAATGGGACAGAGAGGGAGGGTGGATGACAAGGAAGAGGGAGAGGATGTTGTTCATGCGCCAAAGCAAAGCATCTTTAACTCTTTATGGGGTGAGTGTGGTGACTGGTGTTGAATTCATTAAATTACCAAAAGTCTAAGGTTGAGAAGAGACATTGGTGGTAAGGGTGTTTATTAGTGTACAAAAAATATTGCAATGGAGAGGTTTTATCAGAGAGCCCAGGATTATTGCTATAGTACTATTTTTGTTCTGTAGTGAGGTGGGTGCATGAAGGTAGTTAGGTAATCTAAGGTGAGCGGTAGCAGTTTTGAAAATCAGCGACTTTGTAGGTAATGGGGAATATATGCAATGGTCTGATATGATATAGCACCACCTTTTCCTCAATATTGATGCAAATTAATTTCATTGACTTTTCGGTCATTCTCATGGTATTTGAGTTGTATGTATTTTGCTTGACAGAATCCTGGGAAGCTCGAATTGGTAGAGATCTCTTTCCAAACTATATCTTTGCAAGTTTGATCATGTAGGGCTTTGTTTTTCATGTTTTCCCCCGTGCTAAACCCTTAGATTGGGATTTGTATTGAATTAGGCTAGGGAGGCTCTCTATTATTTTCCATACAAACGAATTGATTGAGAGGTCGTGAGTTCGTGATTAACCTACACCGAAGATATTGAAGATACCTCAACCAGAAAGAGGTTAAATTTGTAGATATCACATCCATTCAAATACCCCAACCAAACACCACCCCCTTATATGTGGGTCTCCCATTGTGTGAATGTTGTGGCGTTATGCTTGTGAATTTGAATTTGAAGTTCGAGGGAGATGGTCCTCGAACAAGTGACTTTTCTGAAAGCTTTGATGATTCTTTGTTCTGTTCATGAATATATGTTGCTTTTCTCAGTTGTCATTTTAGATCTGTATGGTGATCTATCTATTGAGATAAACTTATATTCTGGTATTTAGGTATGATTCACGAGAAATAAAAAATATTGAATAGGGTAAGGCTCCCATTCTCAAATAGTGTTGTGTACAAATAATTTTATTTAGAAAAAGATGTTAATATCTAATTGGTGATGTGTAGCATGTTCTCTTAAGCTAATGTTCATTCCTCTTGATGAAAGGTTGACCGGCATCCCCAATTTAGACATTCAAGGTGTCTGTTTGTTGTAAGAACGGATGGTGGATGGATCGACTTCTCCTACCAGAAATGTTTACGGGAGTATATTCGAAATAAGTATCCCTATCATGCTGAAAGATTCATCCGAGAACATTTTAAACGCAGTAGTGGTTAAAAAAAGAAAACATCATGGCGGTAACAGTTTTTGATGTCCGAACCTGATGGCTATGATATGACAAAAAAAAAAGGCTAGGAACCAAATGCTATTCATTGGACAGTCGGCATCCTTGTATTGCTAAACTGGTTTTAGCCATTATGTAGTAGATACTTCTTTACTATCATTAGCTGTTGATGTTATAGTTGACATAGAAAATGATCTACTTGGTATATTGTAATGGGGTTCTGCACAGTTATGGACGCTGAAAGTCCTCAGACTTCATGAAGTTATGTGAACCCAGATGTAGGAAGGATGTGAATTTATTAATGTATTGAACACAACGATCATTTTCCCTGATGCAGTTAATGTACATATTAGGAATATGGTTTCGGAGGTTATCTTTTTGGTCCATGATAATGATAAAATGCCAACATTTTTGCCCAGTGATGTCCACTACTTCCTTCTGCCCTTATATTTGTTGTTTGCTTAATATGAAAAATCATGGAAAATGGGACTTGTATTGTTTGATTGATCAAAACAAGGAGAAATGGACGTAAACAATCCCAACTATGCACATCATCTTTAAAAGAGCCCTACTACAAGTTAACTTACAACACTCC

mRNA sequence

ATGGCTGCGCCTCCACTTCTGCGAGGCCTGCCCTTCCTCCGCCTCCGCGTCTTCCTTCACCATCACCACCGCCTTCTCACACCCGTCTTCTGCACTCCTCTCCGCCCTCGTTTATGCTCGTCCTCTCCTTCTGAGTCGACTCGGTCAGAGGACGATGTGTACTCGTCGGCGAGTGAACTTTTTACGGATATTGAGCCTATTACTTTTCTCGCCAAAGACATTATCCACTCTGATAGGTACATGGATGGGGAACGCCTGTCGCCTGATGATGAGAAAGTTGTTATAGAGAGGTTGCTTGCCTATCATCCTCGTTCTGAAGATAAAATTGGATGCGGACTGGATTCAGTTATGGTTGACCGGCATCCCCAATTTAGACATTCAAGGTGTCTGTTTGTTGTAAGAACGGATGGTGGATGGATCGACTTCTCCTACCAGAAATGTTTACGGGAGTATATTCGAAATAAGTATCCCTATCATGCTGAAAGATTCATCCGAGAACATTTTAAACGCAGTAGTGGTTAAAAAAAGAAAACATCATGGCGGTAACAGTTTTTGATGTCCGAACCTGATGGCTATGATATGACAAAAAAAAAAGGCTAGGAACCAAATGCTATTCATTGGACAGTCGGCATCCTTGTATTGCTAAACTGGTTTTAGCCATTATGTAGTAGATACTTCTTTACTATCATTAGCTGTTGATGTTATAGTTGACATAGAAAATGATCTACTTGGTATATTGTAATGGGGTTCTGCACAGTTATGGACGCTGAAAGTCCTCAGACTTCATGAAGTTATGTGAACCCAGATGTAGGAAGGATGTGAATTTATTAATGTATTGAACACAACGATCATTTTCCCTGATGCAGTTAATGTACATATTAGGAATATGGTTTCGGAGGTTATCTTTTTGGTCCATGATAATGATAAAATGCCAACATTTTTGCCCAGTGATGTCCACTACTTCCTTCTGCCCTTATATTTGTTGTTTGCTTAATATGAAAAATCATGGAAAATGGGACTTGTATTGTTTGATTGATCAAAACAAGGAGAAATGGACGTAAACAATCCCAACTATGCACATCATCTTTAAAAGAGCCCTACTACAAGTTAACTTACAACACTCC

Coding sequence (CDS)

ATGGCTGCGCCTCCACTTCTGCGAGGCCTGCCCTTCCTCCGCCTCCGCGTCTTCCTTCACCATCACCACCGCCTTCTCACACCCGTCTTCTGCACTCCTCTCCGCCCTCGTTTATGCTCGTCCTCTCCTTCTGAGTCGACTCGGTCAGAGGACGATGTGTACTCGTCGGCGAGTGAACTTTTTACGGATATTGAGCCTATTACTTTTCTCGCCAAAGACATTATCCACTCTGATAGGTACATGGATGGGGAACGCCTGTCGCCTGATGATGAGAAAGTTGTTATAGAGAGGTTGCTTGCCTATCATCCTCGTTCTGAAGATAAAATTGGATGCGGACTGGATTCAGTTATGGTTGACCGGCATCCCCAATTTAGACATTCAAGGTGTCTGTTTGTTGTAAGAACGGATGGTGGATGGATCGACTTCTCCTACCAGAAATGTTTACGGGAGTATATTCGAAATAAGTATCCCTATCATGCTGAAAGATTCATCCGAGAACATTTTAAACGCAGTAGTGGTTAA

Protein sequence

MAAPPLLRGLPFLRLRVFLHHHHRLLTPVFCTPLRPRLCSSSPSESTRSEDDVYSSASELFTDIEPITFLAKDIIHSDRYMDGERLSPDDEKVVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYIRNKYPYHAERFIREHFKRSSG

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo26407.1	Spo26407.1	mRNA

Homology

[Close]

BLAST of Spo26407.1 vs. NCBI nr
Match: gi|902218566|gb|KNA18069.1| (hypothetical protein SOVF_074190 [Spinacia oleracea])

HSP 1 Score: 347.8 bits (891), Expect = 1.100e-92
Identity = 173/201 (86.07%), Postives = 173/201 (86.07%), Query Frame = 1

		  
Query: 1   MAAPPLLRGLPFLRLRVFLHHHHRLLTPVFCTPLRPRLCSSSPSESTRSEDDVYSSASEL 60
           MAAPPLLRGLPFLRLRVFLHHHHRLLTPVFCTPLRPRLCSSSPSESTRSEDDVYSSASEL
Sbjct: 1   MAAPPLLRGLPFLRLRVFLHHHHRLLTPVFCTPLRPRLCSSSPSESTRSEDDVYSSASEL 60

Query: 61  FT----------------------------DIEPITFLAKDIIHSDRYMDGERLSPDDEK 120
           FT                            DIEPITFLAKDIIHSDRYMDGERLSPDDEK
Sbjct: 61  FTVKDPPKFFDGIDEINFRKWKDKEDEILQDIEPITFLAKDIIHSDRYMDGERLSPDDEK 120

Query: 121 VVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYI 174
           VVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYI
Sbjct: 121 VVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYI 180

[Close]

BLAST of Spo26407.1 vs. NCBI nr
Match: gi|731314824|ref|XP_010688580.1| (PREDICTED: protein DCL, chloroplastic-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 259.2 bits (661), Expect = 5.000e-66
Identity = 133/201 (66.17%), Postives = 147/201 (73.13%), Query Frame = 1

		  
Query: 1   MAAPPLLRGLPFLRLRVFLHHHHRLLTPVFCTPLRPRLCSSSPSESTRSEDDVYSSASEL 60
           MAAPPL+RG+P LRLR+ LH+HHRL   +F     P LCSS+ S  T SE+DV SSA++L
Sbjct: 1   MAAPPLVRGMPLLRLRLRLHNHHRLTLNLFAPRPHP-LCSSASSGLTTSEEDVLSSATQL 60

Query: 61  FT----------------------------DIEPITFLAKDIIHSDRYMDGERLSPDDEK 120
                                         DIEPIT LAKDIIHSDRYMDG+RL PDDEK
Sbjct: 61  LRVKQPPKLFDRIDDANYRKWKDKEDQILRDIEPITLLAKDIIHSDRYMDGQRLMPDDEK 120

Query: 121 VVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYI 174
            V++RLLAYHP  EDKIGCGLDS+MVDRHPQFR SRCLFVVRTDGGWIDFSYQKCLREYI
Sbjct: 121 AVMQRLLAYHPHCEDKIGCGLDSIMVDRHPQFRQSRCLFVVRTDGGWIDFSYQKCLREYI 180

[Close]

BLAST of Spo26407.1 vs. NCBI nr
Match: gi|802571400|ref|XP_012068293.1| (PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas])

HSP 1 Score: 231.9 bits (590), Expect = 8.600e-58
Identity = 120/202 (59.41%), Postives = 143/202 (70.79%), Query Frame = 1

		  
Query: 1   MAAPPLLRGLPFLRLRVFLHHHHRLLTPVFCTPLRPRLCSSSPSESTRSEDDVYSSAS-- 60
           MAAP LLRG+P LRLR   H+HHRL   +  +PLR   CS++  +STR +++V ++    
Sbjct: 1   MAAPLLLRGIPLLRLR---HNHHRLAVRIL-SPLRQSWCSAA--DSTRLDEEVTTAEKST 60

Query: 61  ---------------------------ELFTDIEPITFLAKDIIHSDRYMDGERLSPDDE 120
                                      E+  DIEPIT L K+I+HSDRY+DGERL+ DDE
Sbjct: 61  AVLSARDPSNYPIWDDPDYRKWKDKEDEILRDIEPITCLTKEILHSDRYLDGERLTADDE 120

Query: 121 KVVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREY 174
           K+V+E+LL YHP SEDKIG GLDS+MVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLR Y
Sbjct: 121 KLVVEKLLTYHPNSEDKIGSGLDSIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAY 180

[Close]

BLAST of Spo26407.1 vs. NCBI nr
Match: gi|743786833|ref|XP_011029320.1| (PREDICTED: protein DCL, chloroplastic-like [Populus euphratica])

HSP 1 Score: 228.0 bits (580), Expect = 1.200e-56
Identity = 123/200 (61.50%), Postives = 142/200 (71.00%), Query Frame = 1

		  
Query: 1   MAAPPLLRGLPFLRLRVFLHHHHRLLTPVFCTPLRPRLCSSSPSESTRSEDD-------- 60
           MAA  L+RG P LRLR  L HHHR  T +   PLR   CS++  EST  E+D        
Sbjct: 1   MAASALVRGAPLLRLR--LQHHHRFATGLL-VPLRRSWCSTA--ESTPPEEDGVSLSTPA 60

Query: 61  --------VYSS------------ASELFTDIEPITFLAKDIIHSDRYMDGERLSPDDEK 120
                    YSS             ++++ DIEPIT LAK+IIHSDRYMDGE+L+ +DEK
Sbjct: 61  ALSLRKAPKYSSWDDQNYRQWKDEEADIWRDIEPITQLAKEIIHSDRYMDGEQLTDEDEK 120

Query: 121 VVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYI 173
           VV ERLLAYHP S+DKIGCGLDS+MVDRHPQF++SRCLFVVRTDGGWIDFSYQKCLR YI
Sbjct: 121 VVAERLLAYHPNSDDKIGCGLDSIMVDRHPQFKNSRCLFVVRTDGGWIDFSYQKCLRAYI 180

[Close]

BLAST of Spo26407.1 vs. NCBI nr
Match: gi|747047499|ref|XP_011069724.1| (PREDICTED: protein DCL, chloroplastic [Sesamum indicum])

HSP 1 Score: 227.6 bits (579), Expect = 1.600e-56
Identity = 121/202 (59.90%), Postives = 139/202 (68.81%), Query Frame = 1

		  
Query: 1   MAAPPLLRGLPFLRLRVFLHHHHRLLTPVFCTPLRPRLCSSSPSESTRSEDD------VY 60
           MAAP LLR LP LRLR+   HHH L T    T LR   CS +   ST +ED+      ++
Sbjct: 1   MAAPLLLRALPLLRLRLVQRHHHFLFTNGSIT-LR-LFCSVATGSSTGAEDNPASLRQIF 60

Query: 61  SSAS-----------------------ELFTDIEPITFLAKDIIHSDRYMDGERLSPDDE 120
           SS +                       E+  DIEPI  L K+I+HS+RYMDGERL+P DE
Sbjct: 61  SSRTSKDPPNYPRWSDPDFRKWKDKEAEILKDIEPIICLTKEILHSNRYMDGERLTPQDE 120

Query: 121 KVVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREY 174
           K V+++LLA+HP SEDKIGCGLDS+MVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLR Y
Sbjct: 121 KAVLDKLLAHHPHSEDKIGCGLDSIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAY 180

[Close]

BLAST of Spo26407.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RGH0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_074190 PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 7.500e-93
Identity = 173/201 (86.07%), Postives = 173/201 (86.07%), Query Frame = 1

		  
Query: 1   MAAPPLLRGLPFLRLRVFLHHHHRLLTPVFCTPLRPRLCSSSPSESTRSEDDVYSSASEL 60
           MAAPPLLRGLPFLRLRVFLHHHHRLLTPVFCTPLRPRLCSSSPSESTRSEDDVYSSASEL
Sbjct: 1   MAAPPLLRGLPFLRLRVFLHHHHRLLTPVFCTPLRPRLCSSSPSESTRSEDDVYSSASEL 60

Query: 61  FT----------------------------DIEPITFLAKDIIHSDRYMDGERLSPDDEK 120
           FT                            DIEPITFLAKDIIHSDRYMDGERLSPDDEK
Sbjct: 61  FTVKDPPKFFDGIDEINFRKWKDKEDEILQDIEPITFLAKDIIHSDRYMDGERLSPDDEK 120

Query: 121 VVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYI 174
           VVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYI
Sbjct: 121 VVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYI 180

[Close]

BLAST of Spo26407.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D4T2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g015620 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 3.500e-66
Identity = 133/201 (66.17%), Postives = 147/201 (73.13%), Query Frame = 1

		  
Query: 1   MAAPPLLRGLPFLRLRVFLHHHHRLLTPVFCTPLRPRLCSSSPSESTRSEDDVYSSASEL 60
           MAAPPL+RG+P LRLR+ LH+HHRL   +F     P LCSS+ S  T SE+DV SSA++L
Sbjct: 1   MAAPPLVRGMPLLRLRLRLHNHHRLTLNLFAPRPHP-LCSSASSGLTTSEEDVLSSATQL 60

Query: 61  FT----------------------------DIEPITFLAKDIIHSDRYMDGERLSPDDEK 120
                                         DIEPIT LAKDIIHSDRYMDG+RL PDDEK
Sbjct: 61  LRVKQPPKLFDRIDDANYRKWKDKEDQILRDIEPITLLAKDIIHSDRYMDGQRLMPDDEK 120

Query: 121 VVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYI 174
            V++RLLAYHP  EDKIGCGLDS+MVDRHPQFR SRCLFVVRTDGGWIDFSYQKCLREYI
Sbjct: 121 AVMQRLLAYHPHCEDKIGCGLDSIMVDRHPQFRQSRCLFVVRTDGGWIDFSYQKCLREYI 180

[Close]

BLAST of Spo26407.1 vs. UniProtKB/TrEMBL
Match: A0A067KZT4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16094 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 6.000e-58
Identity = 120/202 (59.41%), Postives = 143/202 (70.79%), Query Frame = 1

		  
Query: 1   MAAPPLLRGLPFLRLRVFLHHHHRLLTPVFCTPLRPRLCSSSPSESTRSEDDVYSSAS-- 60
           MAAP LLRG+P LRLR   H+HHRL   +  +PLR   CS++  +STR +++V ++    
Sbjct: 1   MAAPLLLRGIPLLRLR---HNHHRLAVRIL-SPLRQSWCSAA--DSTRLDEEVTTAEKST 60

Query: 61  ---------------------------ELFTDIEPITFLAKDIIHSDRYMDGERLSPDDE 120
                                      E+  DIEPIT L K+I+HSDRY+DGERL+ DDE
Sbjct: 61  AVLSARDPSNYPIWDDPDYRKWKDKEDEILRDIEPITCLTKEILHSDRYLDGERLTADDE 120

Query: 121 KVVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREY 174
           K+V+E+LL YHP SEDKIG GLDS+MVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLR Y
Sbjct: 121 KLVVEKLLTYHPNSEDKIGSGLDSIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAY 180

[Close]

BLAST of Spo26407.1 vs. UniProtKB/TrEMBL
Match: E0CPR0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g09930 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.500e-56
Identity = 120/202 (59.41%), Postives = 138/202 (68.32%), Query Frame = 1

		  
Query: 1   MAAPPLLRGLPFLRLRVFLHHHHRLLTPVFCTPLRPRLCSSSPSESTRSEDDVY------ 60
           M+AP LLR +P LRLR     HHRL  P+F    RP  CSS+  ES+RS+ +V       
Sbjct: 1   MSAPLLLRAVPLLRLR-----HHRLAAPLFTLAQRP-WCSST--ESSRSDVNVSYADKNT 60

Query: 61  -----------------------SSASELFTDIEPITFLAKDIIHSDRYMDGERLSPDDE 120
                                  +   E+  DIEPIT L K+I+HSDRYMDGERL+ +DE
Sbjct: 61  TVLSSRDPANYPRWDDPDFRKWKNREEEILRDIEPITSLTKEILHSDRYMDGERLTAEDE 120

Query: 121 KVVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREY 174
           K V+E+LL YHP SEDKIGCGLD +MVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLR Y
Sbjct: 121 KAVVEKLLIYHPHSEDKIGCGLDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAY 180

[Close]

BLAST of Spo26407.1 vs. UniProtKB/TrEMBL
Match: W9QX44_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008893 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 6.200e-55
Identity = 118/206 (57.28%), Postives = 138/206 (66.99%), Query Frame = 1

		  
Query: 1   MAAPPLLRGLPFLRLRVFLHHHHRLLTPVFCTPLRPRLCSSSPSESTRSEDDVYSSAS-- 60
           MAAP LLRG P  RLR  LH HHRL       P  P LC+++ +ESTR +++  ++AS  
Sbjct: 29  MAAPFLLRGFPLHRLR--LHLHHRLAVGRISAPRWP-LCTAA-NESTRPDEEEKAAASSS 88

Query: 61  --------------------------------ELFTDIEPITFLAKDIIHSDRYMDGERL 120
                                           E+  DIEPI  L KDI+HS  YMDGERL
Sbjct: 89  TDNDGGELSVKESPKYPRWNDPDCRQWKDKEEEILRDIEPILLLTKDILHSRMYMDGERL 148

Query: 121 SPDDEKVVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQK 173
           + +DEK V+E+LLAYHPRSEDKIGCGLDS+MVDRHPQFR+SRCLF++RTDG WIDFSYQK
Sbjct: 149 TAEDEKAVVEKLLAYHPRSEDKIGCGLDSIMVDRHPQFRNSRCLFIIRTDGAWIDFSYQK 208

[Close]

BLAST of Spo26407.1 vs. ExPASy Swiss-Prot
Match: DCL_SOLLC (Protein DCL, chloroplastic OS=Solanum lycopersicum GN=DCL PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 6.000e-27
Identity = 51/112 (45.54%), Postives = 75/112 (66.96%), Query Frame = 1

		  
Query: 59  ELFTDIEPITFLAKDIIHSDRYMDGERLSPDDEKVVIERLLAYHPRSEDKIGCGLDSVMV 118
           ++  D  P+    + I+HS +Y  G+RLSPD ++ +++RLL YHP  + KIG G+D + V
Sbjct: 108 QILEDTVPLVGFVRMILHSGKYAIGDRLSPDHQRTILQRLLPYHPECDKKIGPGVDYITV 167

Query: 119 DRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYIRNKYPYHAERFIREHFKR 171
             HP F +SRCLF+VR DG  +DFSY KC++  IR  YP +A+ FI  HF++
Sbjct: 168 GYHPDFENSRCLFIVRKDGETVDFSYWKCIKGLIRKNYPLYADSFILRHFRK 219

[Close]

BLAST of Spo26407.1 vs. ExPASy Swiss-Prot
Match: NRPE1_ARATH (DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana GN=NRPE1 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.900e-25
Identity = 53/120 (44.17%), Postives = 75/120 (62.50%), Query Frame = 1

		  
Query: 51   DDVYSSASELFTDIEPITFLAKDIIHSDRYMDGERLSPDDEKVVIERLLAYHPRSEDKIG 110
            D   S   EL +D+EP+    + I+H   Y DG+ +S DD+  V+E++L +HP+ E K+G
Sbjct: 1730 DSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLG 1789

Query: 111  CGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYIRNKYPYHAERFIREHFKR 170
             G+D + VD+H  F  SRC FVV TDG   DFSY+K L  Y+  KYP  AE FI ++F +
Sbjct: 1790 SGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTK 1849

[Close]

BLAST of Spo26407.1 vs. TAIR (Arabidopsis)
Match: AT3G46630.1 (Protein of unknown function (DUF3223))

HSP 1 Score: 203.8 bits (517), Expect = 8.800e-53
Identity = 113/202 (55.94%), Postives = 133/202 (65.84%), Query Frame = 1

		  
Query: 6   LLRGLPFLRLRVFLHHHHR--LLTPVFCTPLRPRLCSS-------------SPSE----- 65
           LLR LP LR   FL+H H+  ++     +  R  LCS              SP E     
Sbjct: 6   LLRTLPLLR-NGFLNHRHQVGIVAGGILSHRRRLLCSLADRPQFYENNDSVSPVEGSGAA 65

Query: 66  -----------STRSEDDVYSS----ASELFTDIEPITFLAKDIIHSDRYMDGERLSPDD 125
                      S R ED  Y       +E+  DIEPI+ LAK+I+HSDRY+DGERL  +D
Sbjct: 66  AMNVTSPVVDNSWRYEDPDYRKWKNLEAEILRDIEPISLLAKEILHSDRYLDGERLDFED 125

Query: 126 EKVVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRE 173
           EK+V+E+LL YHP S+DKIGCGLD +MVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLR 
Sbjct: 126 EKIVMEKLLPYHPYSKDKIGCGLDFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRA 185

[Close]

BLAST of Spo26407.1 vs. TAIR (Arabidopsis)
Match: AT1G45230.1 (Protein of unknown function (DUF3223))

HSP 1 Score: 134.0 bits (336), Expect = 8.600e-32
Identity = 64/144 (44.44%), Postives = 88/144 (61.11%), Query Frame = 1

		  
Query: 35  RPRLCSSSPSESTRSEDDVYSSASELFTDIE--------PITFLAKDIIHSDRYMDGERL 94
           RPR+ S   SE    E++  S   E F D E        P+    + I+HS +Y + +RL
Sbjct: 72  RPRIASEESSEEEEEEEEENSEGDE-FVDWEDKILEVTVPLVGFVRMILHSGKYANRDRL 131

Query: 95  SPDDEKVVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQK 154
           SP+ E+ +IE LL YHP  E KIGCG+D +MV  HP F  SRC+F+VR DG  +DFSY K
Sbjct: 132 SPEHERTIIEMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWK 191

Query: 155 CLREYIRNKYPYHAERFIREHFKR 171
           C++  I+ KYP +A+ FI  HF++
Sbjct: 192 CIKGLIKKKYPLYADSFILRHFRK 214

[Close]

BLAST of Spo26407.1 vs. TAIR (Arabidopsis)
Match: AT2G40030.1 (nuclear RNA polymerase D1B)

HSP 1 Score: 117.1 bits (292), Expect = 1.100e-26
Identity = 53/120 (44.17%), Postives = 75/120 (62.50%), Query Frame = 1

		  
Query: 51   DDVYSSASELFTDIEPITFLAKDIIHSDRYMDGERLSPDDEKVVIERLLAYHPRSEDKIG 110
            D   S   EL +D+EP+    + I+H   Y DG+ +S DD+  V+E++L +HP+ E K+G
Sbjct: 1730 DSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLG 1789

Query: 111  CGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYIRNKYPYHAERFIREHFKR 170
             G+D + VD+H  F  SRC FVV TDG   DFSY+K L  Y+  KYP  AE FI ++F +
Sbjct: 1790 SGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTK 1849

[Close]

BLAST of Spo26407.1 vs. TAIR (Arabidopsis)
Match: AT1G63020.1 (nuclear RNA polymerase D1A)

HSP 1 Score: 50.4 bits (119), Expect = 1.300e-6
Identity = 31/86 (36.05%), Postives = 50/86 (58.14%), Query Frame = 1

		  
Query: 63   DIEPITFLAKDIIHSDRYMDGERLSPDDEKVVIERLLAYHPRSEDKIGCGLDSVMVDRHP 122
            +IE ++   K I+HS  Y   E L+ + ++ +++ +L  HP S +KIG G+  + V +  
Sbjct: 1338 NIELLSQSLKRILHS--YEINELLN-ERDEGLVKMVLQLHPNSVEKIGPGVKGIRVAK-S 1397

Query: 123  QFRHSRCLFVVRTDGGWIDFSYQKCL 149
            +   S C  VVR DG + DFSY KC+
Sbjct: 1398 KHGDSCCFEVVRIDGTFEDFSYHKCV 1419

The following BLAST results are available for this feature:

BLAST of Spo26407.1 vs. NCBI nr
BLAST of Spo26407.1 vs. UniProtKB/TrEMBL
BLAST of Spo26407.1 vs. ExPASy Swiss-Prot
BLAST of Spo26407.1 vs. TAIR (Arabidopsis)

BLAST of Spo26407.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902218566\|gb\|KNA18069.1\|	1.1e-92	86.0	hypothetical protein SOVF_0741...	[more]
gi\|731314824\|ref\|XP_010688580.1\|	5.0e-66	66.1	PREDICTED: protein DCL, chloro...	[more]
gi\|802571400\|ref\|XP_012068293.1\|	8.6e-58	59.4	PREDICTED: protein DCL, chloro...	[more]
gi\|743786833\|ref\|XP_011029320.1\|	1.2e-56	61.5	PREDICTED: protein DCL, chloro...	[more]
gi\|747047499\|ref\|XP_011069724.1\|	1.6e-56	59.9	PREDICTED: protein DCL, chloro...	[more]

BLAST of Spo26407.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
A0A0K9RGH0_SPIOL	7.5e-93	86.0	Uncharacterized protein OS=Spi...	[more]
A0A0J8D4T2_BETVU	3.5e-66	66.1	Uncharacterized protein OS=Bet...	[more]
A0A067KZT4_JATCU	6.0e-58	59.4	Uncharacterized protein OS=Jat...	[more]
E0CPR0_VITVI	2.5e-56	59.4	Putative uncharacterized prote...	[more]
W9QX44_9ROSA	6.2e-55	57.2	Uncharacterized protein OS=Mor...	[more]

BLAST of Spo26407.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2

Position :

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x 1


Match Name	E-value	Identity	Description
DCL_SOLLC	6.0e-27	45.5	Protein DCL, chloroplastic OS=...	[more]
NRPE1_ARATH	1.9e-25	44.1	DNA-directed RNA polymerase V ...	[more]

BLAST of Spo26407.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4

Position :

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x 1


Match Name	E-value	Identity	Description
AT3G46630.1	8.8e-53	55.9	Protein of unknown function (D...	[more]
AT1G45230.1	8.6e-32	44.4	Protein of unknown function (D...	[more]
AT2G40030.1	1.1e-26	44.1	nuclear RNA polymerase D1B	[more]
AT1G63020.1	1.3e-6	36.0	nuclear RNA polymerase D1A	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021602	Protein of unknown function DUF3223	PFAM	PF11523	DUF3223	coord: 73..148 score: 2.8
None	No IPR available	GENE3D	3.10.450.40		coord: 56..156 score: 7.8
None	No IPR available	PANTHER	PTHR33415	FAMILY NOT NAMED	coord: 59..172 score: 8.9
None	No IPR available	PANTHER	PTHR33415:SF4	SUBFAMILY NOT NAMED	coord: 59..172 score: 8.9

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009308	amine metabolic process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0009657	plastid organization
biological_process	GO:0009637	response to blue light
biological_process	GO:0010218	response to far red light
biological_process	GO:0042631	cellular response to water deprivation
biological_process	GO:0006364	rRNA processing
biological_process	GO:0032544	plastid translation
biological_process	GO:0008152	metabolic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0006412	translation
biological_process	GO:0009081	branched-chain amino acid metabolic process
biological_process	GO:0009987	cellular process
biological_process	GO:0016311	dephosphorylation
biological_process	GO:0019497	hexachlorocyclohexane metabolic process
biological_process	GO:0006771	riboflavin metabolic process
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0010114	response to red light
biological_process	GO:0009853	photorespiration
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006479	protein methylation
biological_process	GO:0046500	S-adenosylmethionine metabolic process
cellular_component	GO:0000312	plastid small ribosomal subunit
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0048038	quinone binding
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0005543	phospholipid binding
molecular_function	GO:0052655	L-valine transaminase activity
molecular_function	GO:0052654	L-leucine transaminase activity
molecular_function	GO:0052656	L-isoleucine transaminase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016772	transferase activity, transferring phosphorus-containing groups
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0004719	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003993	acid phosphatase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo14678	0.74	Barchart \| Table
Spo20946	0.73	Barchart \| Table
Spo08789	0.70	Barchart \| Table
Spo12249	0.69	Barchart \| Table
Spo18502	0.69	Barchart \| Table
Spo20521	0.69	Barchart \| Table
Spo10404	0.67	Barchart \| Table
Spo09202	0.67	Barchart \| Table
Spo26117	0.66	Barchart \| Table
Spo09259	0.66	Barchart \| Table
Spo10285	0.66	Barchart \| Table
Spo23112	0.66	Barchart \| Table
Spo25347	0.66	Barchart \| Table
Spo11902	0.65	Barchart \| Table
Spo02932	0.65	Barchart \| Table