Spo26440 (gene)

Overview
NameSpo26440
Typegene
OrganismSpinacia oleracea (Spinach)
Descriptionalpha/beta-Hydrolases superfamily protein
Locationchr2 : 24479616 .. 24481950 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTCTTGATTATGATAATCTCTATTATATAAGCCAAGAGGGGAGGGTTATTTACGTAACAACACTTTTGATGTCCACCAAGTAAAAGACTAAAAAAACCCCAACACCCCCAACAGATTACCTTCAACCCTTTCCACGCTAGTACTGCTTTCTCCTTCCTCAGTCTCACTTGCTCATTTTTGTTTTCTCAAAACCTAAACCTAAAAGCTTCGAATATCTCTCTCCACAAACACTAGAGCAAGAGAAATCGAGAGAGGAGAGAAAAAAATGGAAGATCCCAACACCCAAACATACGATGTTCCTCTCACGGATCTGCCTGGGTTCCCACCGATTTGGCCGAATCAAAACCCGATGTTGTTGTTAGCGGTGAAAAATCCTCCGGCAATCCGTCGACATTAATGGTTCTCGCCAGGAGAAGGCTGTAGCGGCATTCCCGACTTTTTCGTTAATTCTCTCTCCTCTGAACCTGTAAGCTCCACTCTAATGTCTAAATCACGATTTCTGTTTTTTTTGTTTGATTTGGTTAAATCTTAGAAATTGAACTTAGTTTCAGATGGAAGGTGTTTACCTTGATTAGATGATTTTTCCTCAAAATGGAGATGTTTCCAGAATTTGATATTTGCGTTTAATTTTTGCTTTTGTTTTTTTTTCAATTTCTGAGATTGTTTCTGGAATTTGATCTACAAATTTTGATCCGATAATAATAATTCTCATTTTGAAGTGAATAAATTGGATTTTGGTGAAGACGATGATGATGTGGGAGAGAGAAAGGCATATCCACATATGGGGTTTGGGTTTTAGAAGTGATGCTGCTACAAACTAGGTTGCTACTCCCTTCACCATCTTTCTCTTGCTTCTCTTGAGGTTGTTCTTCTTTCTCCTTTGTCGTTATTTTTCTGAATGTTGTGGGATGGCAAATTTATCTTATCAAAGGTAATTATGAGCTTTTTTGGAGTTTGGTATCTGGGATTTAAAATTACAATTTATTAAATGAAAATTTGGACCAAAGAAAAGCGACTGAAAAACGAAAATCTTACATTTAAACCTTCAGTTTGACTACATCACATAATAGATGGTTGATAATCAGGGAAAAGGAGGATTAATACTCCGTAACACAGTAGTTTTTTTGTTAAGACAAAAGTGATAGAAATTTAACCAATATCCAATATTAAACGACAAAGATGGGGAGGGGCATTTCAGTATACTGTGATAATACATGGATTTGATCTTATTTTATTGATGGGATATGTTTATTCCTGCAGTGCTGCTGATTGGAAGTTTGGAGCGGAGCAGTTTGTTAAAATGCTCCCAGATAAAGTACATGTTCATTGTAAGGATGTTTCTCGCTTTTGTTATTTTTGTTTTATGCTATTTTGTTGGAGTGGATATATGTAGTTGTTTTAATATGGCAAGGCTTTCAATTTGATCTGTTGAAGGATGTCTGTTTCGTTTTGCAGCTTATTAATTATGTATTATGTCTGGCTAAATGGTTATACTCACGTACTGGGGTTTCTTGCTTTGTTTACGATTCCATTGCAATTGTTTGTTTCTTATGGTTGATTGCTTTGGTTAATTGGTTTTGAATGATTTTTGAATTGTTACAATGCAAATTCGTATTGGGTTGGACCTGATGGTATTGTTTGTTTCTTATGGTTGATTGATATGGATAATGCCATTAAATTTATTAAGAATTTAATAAATTCCATTGCAATATGAATTGTTCAAAACTGGAGAACTATAGGATTGGTCGTTCCAATGCAATAGAATCTATTAAGAACATAGATTCATATATTCAAGTCATATGAATCTATTTTTACAATGACTAGAATCTTTCCAATGTGAATTGTTCCAATGCAATAGAATCTATATAATAGAGATTGGCAAAGAAAACAAAGTCAATATTTTTTCCTGACATTTTCATTGTTTTGGCTTCACATGATTTGCTACAATAACAATCAATCAAATAAAGGTCTAATTAGTTATCTCATATTTATTATGAGTAGGGGAAAGGAACAAGACCCACAAGTGTGTGTGCGATGTGGCCGCTAAATTTTTCATCTTCAGAAGAGCCGTTGTTCTGCCTGTGCTTACCCCGTTGCTTGCACCAGGAAATGTATGCATCTTCATTTTTCTCTCTCACATATTTTTGCTGTTTTGATTGGTTTCATTCACTAGGGTATTGATGAATAATGAAAAAAGATATGAGCTGGTTTTTTTGTATGTTACAGTTAAAAGGGGGATCTTGCTTTTGTTGATTGGTCATGAGTGGGCCACGCTCTTTAAGGTACAGGCGAGGGAGCTGATGAAGCCCGTGCATCCTAAGGAGCTAAAGTGA

mRNA sequence

TTCTCTTGATTATGATAATCTCTATTATATAAGCCAAGAGGGGAGGGTTATTTACGTAACAACACTTTTGATGTCCACCAAGTAAAAGACTAAAAAAACCCCAACACCCCCAACAGATTACCTTCAACCCTTTCCACGCTAGTACTGCTTTCTCCTTCCTCAGTCTCACTTGCTCATTTTTGTTTTCTCAAAACCTAAACCTAAAAGCTTCGAATATCTCTCTCCACAAACACTAGAGCAAGAGAAATCGAGAGAGGAGAGAAAAAAATGGAAGATCCCAACACCCAAACATACGATGTTCCTCTCACGGATCTGCCTGGGTTCCCACCGATTTGGCCGAATCAAAACCCGATGTTGTTGTTAGCGGTGAAAAATCCTCCGGCAATCCGTCGACATTAATGGTTCTCGCCAGGAGAAGGCTGTAGCGGCATTCCCGACTTTTTCGTTAATTCTCTCTCCTCTGAACCTTGAATAAATTGGATTTTGGTGAAGACGATGATGATGTGGGAGAGAGAAAGGCATATCCACATATGGGGTTTGGGTTTTAGAAGTGATGCTGCTACAAACTAGGTTGCTACTCCCTTCACCATCTTTCTCTTGCTTCTCTTGAGGTTGTTCTTCTTTCTCCTTTGTCGTTATTTTTCTGAATGTTGTGGGATGGCAAATTTATCTTATCAAAGGTAATTATGAGCTTTTTTGGAGTTTGGTATCTGGGATTTAAAATTACAATTTATTAAATGAAAATTTGGACCAAAGAAAAGCGACTGAAAAACGAAAATCTTACATTTAAACCTTCAGTTTGACTACATCACATAATAGATGGTTGATAATCAGGGAAAAGGAGGATTAATACTCCGTAACACAGTAGTTTTTTTGTTAAGACAAAAGTGATAGAAATTTAACCAATATCCAATATTAAACGACAAAGATGGGGAGGGGCATTTCAGTATACTGTGATAATACATGGATTTGATCTTATTTTATTGATGGGATATGTTTATTCCTGCAGTGCTGCTGATTGGAAGTTTGGAGCGGAGCAGTTTGTTAAAATGCTCCCAGATAAAGTACATGTTCATTGGGAAAGGAACAAGACCCACAAGTGTGTGTGCGATGTGGCCGCTAAATTTTTCATCTTCAGAAGAGCCGTTGTTCTGCCTGTGCTTACCCCGTTGCTTGCACCAGGAAATCTGGTTTTTTTGTATGTTACAGTTAAAAGGGGGATCTTGCTTTTGTTGATTGGTCATGAGTGGGCCACGCTCTTTAAGGTACAGGCGAGGGAGCTGATGAAGCCCGTGCATCCTAAGGAGCTAAAGTGA

Coding sequence (CDS)

ATGGGATATGTTTATTCCTGCAGTGCTGCTGATTGGAAGTTTGGAGCGGAGCAGTTTGTTAAAATGCTCCCAGATAAAGTACATGTTCATTGGGAAAGGAACAAGACCCACAAGTGTGTGTGCGATGTGGCCGCTAAATTTTTCATCTTCAGAAGAGCCGTTGTTCTGCCTGTGCTTACCCCGTTGCTTGCACCAGGAAATCTGGTTTTTTTGTATGTTACAGTTAAAAGGGGGATCTTGCTTTTGTTGATTGGTCATGAGTGGGCCACGCTCTTTAAGGTACAGGCGAGGGAGCTGATGAAGCCCGTGCATCCTAAGGAGCTAAAGTGA

Protein sequence

MGYVYSCSAADWKFGAEQFVKMLPDKVHVHWERNKTHKCVCDVAAKFFIFRRAVVLPVLTPLLAPGNLVFLYVTVKRGILLLLIGHEWATLFKVQARELMKPVHPKELK
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo26440.1Spo26440.1mRNA


Homology
[Close]
BLAST of Spo26440.1 vs. NCBI nr
Match: gi|902211210|gb|KNA16649.1| (hypothetical protein SOVF_086950 [Spinacia oleracea])

HSP 1 Score: 132.1 bits (331), Expect = 5.800e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

		  

Query: 8  SAADWKFGAEQFVKMLPDKVHVHWERNKTHKCVCDVAAKFFIFRRAVVLPVLTPLLAPGN 67
          SAADWKFGAEQFVKMLPDKVHVHWERNKTHKCVCDVAAKFFIFRRAVVLPVLTPLLAPGN
Sbjct: 20 SAADWKFGAEQFVKMLPDKVHVHWERNKTHKCVCDVAAKFFIFRRAVVLPVLTPLLAPGN 79

Query: 68 L 69
          L
Sbjct: 80 L 80
[Close]
BLAST of Spo26440.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RCD9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_086950 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 4.100e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

		  

Query: 8  SAADWKFGAEQFVKMLPDKVHVHWERNKTHKCVCDVAAKFFIFRRAVVLPVLTPLLAPGN 67
          SAADWKFGAEQFVKMLPDKVHVHWERNKTHKCVCDVAAKFFIFRRAVVLPVLTPLLAPGN
Sbjct: 20 SAADWKFGAEQFVKMLPDKVHVHWERNKTHKCVCDVAAKFFIFRRAVVLPVLTPLLAPGN 79

Query: 68 L 69
          L
Sbjct: 80 L 80
The following BLAST results are available for this feature:
BLAST of Spo26440.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902211210|gb|KNA16649.1|5.8e-28100.hypothetical protein SOVF_0869... [more]
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BLAST of Spo26440.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RCD9_SPIOL4.1e-28100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo26440.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo26440.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0016567 protein ubiquitination
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0006887 exocytosis
biological_process GO:0009408 response to heat
biological_process GO:0006810 transport
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0006396 RNA processing
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity
biological_process GO:0009395 phospholipid catabolic process
biological_process GO:0006906 vesicle fusion
biological_process GO:0048573 photoperiodism, flowering
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0007033 vacuole organization
biological_process GO:0009734 auxin-activated signaling pathway
biological_process GO:0009737 response to abscisic acid
biological_process GO:0009414 response to water deprivation
biological_process GO:0009409 response to cold
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0009698 phenylpropanoid metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009873 ethylene-activated signaling pathway
biological_process GO:0045893 positive regulation of transcription, DNA-templated
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0031201 SNARE complex
cellular_component GO:0005829 cytosol
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005622 intracellular
cellular_component GO:0008287 protein serine/threonine phosphatase complex
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0005768 endosome
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0008374 O-acyltransferase activity
molecular_function GO:0004842 ubiquitin-protein transferase activity
molecular_function GO:0000149 SNARE binding
molecular_function GO:0004620 phospholipase activity
molecular_function GO:0005484 SNAP receptor activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0004722 protein serine/threonine phosphatase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0019901 protein kinase binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0019706 protein-cysteine S-palmitoyltransferase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0000822 inositol hexakisphosphate binding
molecular_function GO:0003958 NADPH-hemoprotein reductase activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0010181 FMN binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003677 DNA binding
RNA-Seq Expression