Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCGCCATCGCCATGGATATGGAAGAAGCCAGCCTCGGTATTATTGCTTATCTCGATTTTAGGCATACTCTGCAAAATCAACACCAGTTGATTGTACAAATGGAGAACGAACTCAATGGGATGATACAGAATTACAACGAAGAACAGCAAAATTTTCATGATGAGGCGAGGGCGGAAAATCCTGACGTGCCGGAGTGGCGACGGAGTGGCCACGCGTGTACCTTCTTGAGAAATCGAATTCTTCAGATGTCTAATCGACTTAATGAGGCGCAATTGGACAATGCAAAGGCGCAATTGGACAATGCAAACTTGCAAGAAGTGAGATGTTTACATTATGACCAGATGCTTTGTAGCACTTTATTGGAGATAAACTCAGTTGAAGCGGCGAATGTGGCCATGGAACTCATTAACCTCCATAATTGGAACGGGTTCGTTTGGGTCACCGAGGATATCCCTGTTGAAGTGAGGGCGAATATTAACGATGTTCTAGGGAATATCGTTAATCTCATTAATTAAAAGAAGGAGAAAGTATTTAATATTTAAGGTAATTGTTTTCTTTATGCATCTTTGACATTATTATAATTCTAAAAGATTGCTGTCTGACACATTAAACCCCAATTCTGTTTCTGTTTCTGGTTCTGTTTTGCTGTTAGTAATGGCTTTTTGTGCGAATGTGTAAAGCTAATGCTCTTTACTCACTGTCCTTAATTGGGTTAATCCTCAATGCTGTTATAAAACTGATGCCAGGAAATCTTGAAACAAGTGAATCTTAAGTTCTTAACATGCCAGTTATATTCTCTGGGTTTTGTTGATGCTTATACAGATCTGTTTCCATCCCCTGCCAAAGGAGGAAACACTTTTAAGACATTCAATTCTGGGACCAAATGGGCTCTGCAGGCAGTGGCAACCACCTGTCGCTGATAAAGGGGTATGTGGCTGTAGCATCTGATTTGTTTTCTAATTGCCAAACTGTTTCTTGACTTTCCATTATGAATGTAGGTTCGTTACCCCAGTATTATTGATACAAAATTTTAAATACTGTGAGATGATATTTGCTAAATCAGTTGTTTTATTTGTTTGTTGATCTTCTTTGGAAAAAAAATGTCCGAGTCTAAGATTGTATTTACGCGTGTTTGCCTGTTTGGTAGTGGAGACGGCTGTGAATTTTTTTCTGCAGCAATCTAGTTGATGCACTTGCATGTAGGTGTTGCGAAGAACTTCATACGTAGGGAGTATAATAGATTATGCATTTTGCACTGTCCAGATGCAAATGTAACTTACTATTTCTCGTTTATCAACACCTTAGAGATACATTAAATGATAATCTGTTTTGTAATCCTTTTTGAATGTATGAAACCTTACCTATGAGTATAATTTCCAAAATGCCTTCAATAGTATTAACGGTTGTTCCATTCTCCTAGAGATTTTTTCATACTGTCATGGCATTAGTGATTTACTCCTGAAATATCATATTTATATGGGGCCTGTATTGCATATATGAAACTCTAGTGAAATCTGACTATTTTGTCCATTCAGCTTGGGGTTTATTTGTTTATTATTTGTCCTGTGTCTGATGTTCCTGATACAGTTATTGTCAAGCAACCTAGCCCTCCAGCTGTACTTGCAGAGGTGCAAGACTTGGTATTTTGATGTAATGCCTGCTGCTCTAAACGAAGTGACAGACCCTGTGGCTAAGCAGTTCATTGAATAATTGCATCTTGGAGACCTTCTGCAATTATTCTCTTGGATGACCCTTTTCTTGCACAGAGTGTTCCTACTACCTTAAAAGCAACTAGTCGTCTGAATCTGAGAAAATGTCTTCGTACTGTGTCTAATCAGGTGGATAGATTACAACCTAAGACATTTAAGTTAACAGGGGAAATAGACAACACTGGTTCCATATCTATGTCCTTGTTGATTACTTTTCGAAGTACTAAAGAAGAGACGATTCAAATAGATTTCTCACTCGAAAATGATACAATTCAAGAAGTCGTCGCAAGAATTGCAACACAAAATGGTTGGTCAACTGCTGAAGTCACGCTGGTTTCTGAACTCATGGAAAAACGGGTAACAGCACTCACATCTTCTGATGGTCGTTGGAGCTGTTTCTGAATAACAACTCAGTATTGCACATCATTCTTTACAGATATGACTTGTTTCTTAAATTCTAGTTGAGTGTTATAGTTTTGTGGACATTATTCTAAGCTGTTTTTTGTTAAATTGTAGTTGAGTGTTATAGTTTTGTTCAGGTCAAAAGTAATCTGGCCTGCATTGTCAGTAAATTTGATTCATGTTAGTTTAATATGCAAAGTCCCACTGTTTTTGTTGATTTGTTATCATCATTAATTCATTACTATCCATGTTTTTCTATGTCACCG ATGGCCGCCATCGCCATGGATATGGAAGAAGCCAGCCTCGGTATTATTGCTTATCTCGATTTTAGGCATACTCTGCAAAATCAACACCAGTTGATTGTACAAATGGAGAACGAACTCAATGGGATGATACAGAATTACAACGAAGAACAGCAAAATTTTCATGATGAGGCGAGGGCGGAAAATCCTGACGTGCCGGAGTGGCGACGGAGTGGCCACGCGTGTACCTTCTTGAGAAATCGAATTCTTCAGATGTCTAATCGACTTAATGAGGCGCAATTGGACAATGCAAAGGCGCAATTGGACAATGCAAACTTGCAAGAAGTGAGATGTTTACATTATGACCAGATGCTTTGTAGCACTTTATTGGAGATAAACTCAGTTGAAGCGGCGAATGTGGCCATGGAACTCATTAACCTCCATAATTGGAACGGAAGGAGAAAGTATTTAATATTTAAGATCTGTTTCCATCCCCTGCCAAAGGAGGAAACACTTTTAAGACATTCAATTCTGGGACCAAATGGGCTCTGCAGGCAGTGGCAACCACCTGTCGCTGATAAAGGGTTATTGTCAAGCAACCTAGCCCTCCAGCTGTACTTGCAGAGGTGCAAGACTTGGTATTTTGATGTAATGCCTGCTGCTCTAAACGAAGTGACAGACCCTGTGGCTAAGCAGTTCATTGAATAATTGCATCTTGGAGACCTTCTGCAATTATTCTCTTGGATGACCCTTTTCTTGCACAGAGTGTTCCTACTACCTTAAAAGCAACTAGTCGTCTGAATCTGAGAAAATGTCTTCGTACTGTGTCTAATCAGGTGGATAGATTACAACCTAAGACATTTAAGTTAACAGGGGAAATAGACAACACTGGTTCCATATCTATGTCCTTGTTGATTACTTTTCGAAGTACTAAAGAAGAGACGATTCAAATAGATTTCTCACTCGAAAATGATACAATTCAAGAAGTCGTCGCAAGAATTGCAACACAAAATGGTTGGTCAACTGCTGAAGTCACGCTGGTTTCTGAACTCATGGAAAAACGGGTAACAGCACTCACATCTTCTGATGGTCGTTGGAGCTGTTTCTGAATAACAACTCAGTATTGCACATCATTCTTTACAGATATGACTTGTTTCTTAAATTCTAGTTGAGTGTTATAGTTTTGTGGACATTATTCTAAGCTGTTTTTTGTTAAATTGTAGTTGAGTGTTATAGTTTTGTTCAGGTCAAAAGTAATCTGGCCTGCATTGTCAGTAAATTTGATTCATGTTAGTTTAATATGCAAAGTCCCACTGTTTTTGTTGATTTGTTATCATCATTAATTCATTACTATCCATGTTTTTCTATGTCACCG ATGGCCGCCATCGCCATGGATATGGAAGAAGCCAGCCTCGGTATTATTGCTTATCTCGATTTTAGGCATACTCTGCAAAATCAACACCAGTTGATTGTACAAATGGAGAACGAACTCAATGGGATGATACAGAATTACAACGAAGAACAGCAAAATTTTCATGATGAGGCGAGGGCGGAAAATCCTGACGTGCCGGAGTGGCGACGGAGTGGCCACGCGTGTACCTTCTTGAGAAATCGAATTCTTCAGATGTCTAATCGACTTAATGAGGCGCAATTGGACAATGCAAAGGCGCAATTGGACAATGCAAACTTGCAAGAAGTGAGATGTTTACATTATGACCAGATGCTTTGTAGCACTTTATTGGAGATAAACTCAGTTGAAGCGGCGAATGTGGCCATGGAACTCATTAACCTCCATAATTGGAACGGAAGGAGAAAGTATTTAATATTTAAGATCTGTTTCCATCCCCTGCCAAAGGAGGAAACACTTTTAAGACATTCAATTCTGGGACCAAATGGGCTCTGCAGGCAGTGGCAACCACCTGTCGCTGATAAAGGGTTATTGTCAAGCAACCTAGCCCTCCAGCTGTACTTGCAGAGGTGCAAGACTTGGTATTTTGATGTAATGCCTGCTGCTCTAAACGAAGTGACAGACCCTGTGGCTAAGCAGTTCATTGAATAA MAAIAMDMEEASLGIIAYLDFRHTLQNQHQLIVQMENELNGMIQNYNEEQQNFHDEARAENPDVPEWRRSGHACTFLRNRILQMSNRLNEAQLDNAKAQLDNANLQEVRCLHYDQMLCSTLLEINSVEAANVAMELINLHNWNGRRKYLIFKICFHPLPKEETLLRHSILGPNGLCRQWQPPVADKGLLSSNLALQLYLQRCKTWYFDVMPAALNEVTDPVAKQFIE Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo26512.1 vs. NCBI nr
Match: gi|902110351|gb|KNA03699.1| (hypothetical protein SOVF_206590 [Spinacia oleracea]) HSP 1 Score: 288.1 bits (736), Expect = 1.300e-74 Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1
BLAST of Spo26512.1 vs. NCBI nr
Match: gi|902211623|gb|KNA16781.1| (hypothetical protein SOVF_086080 [Spinacia oleracea]) HSP 1 Score: 69.3 bits (168), Expect = 9.700e-9 Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 1
BLAST of Spo26512.1 vs. NCBI nr
Match: gi|449439413|ref|XP_004137480.1| (PREDICTED: AMSH-like ubiquitin thioesterase 1 [Cucumis sativus]) HSP 1 Score: 61.2 bits (147), Expect = 2.600e-6 Identity = 26/32 (81.25%), Postives = 27/32 (84.38%), Query Frame = 1
BLAST of Spo26512.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q8X7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_206590 PE=4 SV=1) HSP 1 Score: 288.1 bits (736), Expect = 9.200e-75 Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1
BLAST of Spo26512.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RBA7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_086080 PE=4 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 6.800e-9 Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 1
BLAST of Spo26512.1 vs. UniProtKB/TrEMBL
Match: A0A0A0LTN8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042390 PE=4 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 1.800e-6 Identity = 26/32 (81.25%), Postives = 27/32 (84.38%), Query Frame = 1
BLAST of Spo26512.1 vs. UniProtKB/TrEMBL
Match: A0A164UVM4_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_023210 PE=4 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 9.100e-6 Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 1
BLAST of Spo26512.1 vs. UniProtKB/TrEMBL
Match: B9T631_RICCO (Amsh, putative OS=Ricinus communis GN=RCOM_1197790 PE=4 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 9.100e-6 Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 1
BLAST of Spo26512.1 vs. TAIR (Arabidopsis)
Match: AT1G48790.1 (associated molecule with the SH3 domain of STAM 1) HSP 1 Score: 48.9 bits (115), Expect = 4.800e-6 Identity = 28/70 (40.00%), Postives = 32/70 (45.71%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo26512.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 3
BLAST of Spo26512.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo26512.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo26512.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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